Gene detail

Detailed information of scaffold167.g2.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold167:20409...57354
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold167.g2.t1

ataggatcttttgagcaaaccttcaaaggacctccattcacattgacttgatctgtgattgcattcccttctgagagagctagaaaattgctcactatcatgcaagaaagtaacccaaaacttgtcattatttttcctttttctgtcgtcttcctcgtggcttaactttagctagaaagtgttatggtttttcaccgtctactgtagttatgcttcttcaagacatgttaatggaccacatgactttgatatgattgtttacaaattgtctgatgtaaaggcaaatctttccaatccagatgccaaccatgacagtaatcatccatcgatttgtggagtgaaagaccatggaagagatcatgagcatccacatgattttcattcgttgcacgaagagcaagaaaaagaacgcagagaacgtagagcgagacggtctgttacaactgatgcttccaaaacttatgatacatgtcaacttgttcttgttgctgatcatttattctttgaacacatgggacaaagaaaaagtagtacggcgatcaattatatgttatccgtgatacaaagagtggaccagatttacaggaaggtgcaatggccatcaggattgaggaatatcggatttgaagtccgcagggtgatagtccatgataaacccagtggaacgaaaggcccagcatataatcaatataaatcaaagtcttgggatgaagaagaacttttaagggctttcagcagaggatactggagagacttttgccttgctcatttattcacatatcaagatttcccaaatggtgttattggtgtcgcatatgttggaagtcctaaacttattggattgggaggaatatgctccatcgcatataagggcagcacaggaacaatgtcatttctaaacagtggacttagtagcagtatgaactggggaaggaggctgctgacgtcagaagctgatgttgtcacagctcatgttatccgtgatacaaagagtagaccagatttacaggaaggtgcaatggccatcaggattgaggaatatcggatttgaagtccgcagggtgatagtccatgataaacccagtggaacgaaaggcccagcatataatcaatataaatcaaagtcttgggatgaagaagaacttttaagggctttcagcagaggatactggagagatttttgccttgctcatttattcacatatcaagatttcccaaatggtgttattggtgtcgcatatgttggaagtcctaaacttattggattgggaggaatatgctccatcgcatataagggcagcacaggaacaatgtcatttctaaacagtggacttagtagcagtatgaactggggaaggaggctgctgacgtcagaagctgatgttgtcacagctcatggacataattttggttcaaatcacgacccttcctcaagggaatgttcaccgggtaattcaaaaggtggaaaattcatgatgtattctacatctgtatctggactgagaccaaacaacaagaagttctcaccatgtagcgaacgaagcattgatgatgttctggtcaaaaagagaaaggaatgtttcaaaagtaaagtaggacaatattgtgggaacaacgaagttgaggcgaatgttaaagatccaagcaagagcgaaagatgtgatcctgggctggatgcgaaactgaatgacaccgacaaatgttgtacaagtaattgccaattcagaggagctgcagtttgcagtgatgtgaatacaccatgttgtgacaactgtcaatttgcaaagaagactaagaaatgccgtgacagttttccccttgcttgtcaaggtgaaacgtattgcaatggttcaagtgcacattgtcctgacgctcctccgcttagtggtgtaccatgcgcattttcaaagggtatgtgtttcaagggcaaatgtcttacactatgcgaacagaacaaaatggtttcctgtctctgctcaaaagccgaccaagtttgcaagatctgctgtaagaaagctaatacaacaagtgcggcttgtaatcctatcattgtaaatgcgaccaacttcaacatcaatgacggggtaccatgtcctattggagaattatcaggcagctgtcttcagggaacttgcaagaaaacgcagaaggatttttctcagcatttgttgaacctgttgaaagattttactgcaagcaaattcgctcgattcatgcaagaaaacatcgttatgaccgtcctcgtcttctcattgctaatatggattcctgcgagctgtgttgttcgttacgttgacaaaagacgagaacgagaagaaattgaggaaatggaatggaaagatatcaacaatgcagacctgatacgaaaattaagtcaaaagaagaagaaacaagacgttttcaaatcaccgcagcaaaagcaatcgccaagacgtcatacaggacaacgacctagaacaggtcgcagtctcgcttttgctgattgataagatattgcacgtaaacgaggtttgtagatacatttaatttgcacatagggactgctgtggggttcttcgtggactgctgtggtggatagagcatcagattcagagcgagatttttgagcctcgaatgttttacaacaaatctggatattatatcggagaagtaaaattttatcttccaaaggcattatatactccatgttttgtctgacgcgttaagctccattaacggtattaggcaaaaacttcgtagaaatctaatatcaaatagctctattaacttagttagtggcagaatattagaacggctgtgacggaataagcagctgagtatagaatcgcccttatatggtgcctgcgagcgtagagagtgtcatttgaatgttggacttgatctaagatttaactcgctacagtataggagataacttgacatgtttgtacagataattttttagttcgttgtttctacttgacacaaatttctttttccaatgtttaagctaaatttcatcatgtcctgggtgcaatattgaagttgcatagttcgcttgcgcgactggctggcagccctgatttcatggcctaataccaaagcgagcagtctgaagtgacaattttgaaaatttctgactgcagtactggggaacattttggacaaagtaatctaacgcaagtgaaaatttatgtactttcccttttagtgtgagcttgcttatttgagcgagttttgcaaagtccccgtgccttattaaacaaagggggctttttgtaagatgagtagatagactattatagttgacagtcaaagttttgcttgcataaattgctccaataaaatctaagtgtgggcctcctgacacaggctttctattttaaagcactgttacgatttataccatagactctaaactaaaaatgttttaccgaagccctgagagagagagaaacccttttctcggcaaacttttgaatttccatcatagagaaacccgaattgcgaaacctaataaaacacatttgcacagatctatgctgcgttatttgcacttatttttttttgcatcaaacgatgtttttcgtcgaaacttttacagtcttaaaagctagctttcataacataatttaaagcaagattgacttatttgtaaataattattgagtaccaag

Transcript

scaffold167.g2.t1

ATAGGATCTTTTGAGCAAACCTTCAAAGGACCTCCATTCACATTGACTTGATCTGTGATTGCATTCCCTTCTGAGAGAGCTAGAAAATTGCTCACTATCATGCAAGAAAGTAACCCAAAACTTGTCATTATTTTTCCTTTTTCTGTCGTCTTCCTCGTGGCTTAACTTTAGCTAGAAAGTGTTATGGTTTTTCACCGTCTACTGTAGTTATGCTTCTTCAAGACATGTTAATGGACCACATGACTTTGATATGATTGTTTACAAATTGTCTGATGTAAAGGCAAATCTTTCCAATCCAGATGCCAACCATGACAGTAATCATCCATCGATTTGTGGAGTGAAAGACCATGGAAGAGATCATGAGCATCCACATGAttttcATTCGTTGCACGAAGAGCAAGAAAAAGAACGCAGAGAACGTAGAGCGAGACGGTCTGTTACAACTGATGCTTCCAAAACTTATGATACATGTCAACTTGTTCTTGTTGCTGATCATTTATTCTTTGAACACATGGGACAAAGAAAAAGTAGTACGGCGATCAATTATATGTTATCCGTGATACAAAGAGTGGACCAGATTTACAGGAAGGTGCAATGGCCATCAGGATTGAGGAATATCGGATTTGAAGTCCGCAGGGTGATAGTCCATGATAAACCCAGTGGAACGAAAGGCCCAGCATATAATCAATATAAATCAAAGTCTTGGGATGAAGAAGAACTTTTAAGGGCTTTCAGCAGAGGATACTGGAGAGACTTTTGCCTTGCTCATTTATTCACATATCAAGATTTCCCAAATGGTGTTATTGGTGTCGCATATGTTGGAAGTCCTAAACTTATTGGATTGGGAGGAATATGCTCCATCGCATATAAGGGCAGCACAGGAACAATGTCATTTCTAAACAGTGGACTTAGTAGCAGTATGAACTGGGGAAGGAGGCTGCTGACGTCAGAAGCTGATGTTGTCACAGCTCATGTTATCCGTGATACAAAGAGTAGACCAGATTTACAGGAAGGTGCAATGGCCATCAGGATTGAGGAATATCGGATTTGAAGTCCGCAGGGTGATAGTCCATGATAAACCCAGTGGAACGAAAGGCCCAGCATATAATCAATATAAATCAAAGTCTTGGGATGAAGAAGAACTTTTAAGGGCTTTCAGCAGAGGATACTGGAGAGATTTTTGCCTTGCTCATTTATTCACATATCAAGATTTCCCAAATGGTGTTATTGGTGTCGCATATGTTGGAAGTCCTAAACTTATTGGATTGGGAGGAATATGCTCCATCGCATATAAGGGCAGCACAGGAACAATGTCATTTCTAAACAGTGGACTTAGTAGCAGTATGAACTGGGGAAGGAGGCTGCTGACGTCAGAAGCTGATGTTGTCACAGCTCATGGACATAATTTTGGTTCAAATCACGACCCTTCCTCAAGGGAATGTTCACCGGGTAATTCAAAAGGTGGAAAATTCATGATGTATTCTACATCTGTATCTGGACTGAGACCAAACAACAAGAAGTTCTCACCATGTAGCGAACGAAGCATTGATGATGTTCTGGTCAAAAAGAGAAAGGAATGTTTCAAAAGTAAAGTAGGACAATATTGTGGGAACAACGAAGTTGAGGCGAATGTTAAAGATCCAAGCAAGAGCGAAAGATGTGATCCTGGGCTGGATGCGAAACTGAATGACACCGACAAATGTTGTACAAGTAATTGCCAATTCAGAGGAGCTGCAGTTTGCAGTGATGTGAATACACCATGTTGTGACAACTGTCAATTTGCAAAGAAGACTAAGAAATGCCGTGACAGTTTTCCCCTTGCTTGTCAAGGTGAAACGTATTGCAATGGTTCAAGTGCACATTGTCCTGACGCTCCTCCGCTTAGTGGTGTACCATGCGCATTTTCAAAGGGTATGTGTTTCAAGGGCAAATGTCTTACACTATGCGAACAGAACAAAATGGTTTCCTGTCTCTGCTCAAAAGCCGACCAAGTTTGCAAGATCTGCTGTAAGAAAGCTAATACAACAAGTGCGGCTTGTAATCCTATCATTGTAAATGCGACCAACTTCAACATCAATGACGGGGTACCATGTCCTATTGGAGAATTATCAGGCAGCTGTCTTCAGGGAACTTGCAAGAAAACGCAGAAGGATTTTTCTCAGCATTTGTTGAACCTGTTGAAAGATTTTACTGCAAGCAAATTCGCTCGATTCATGCAAGAAAACATCGTTATGACCGTCCTCGTCTTCTCATTGCTAATATGGATTCCTGCGAGCTGTGTTGTTCGTTACGTTGACAAAAGACGAGAACGAGAAGAAATTGAGGAAATGGAATGGAAAGATATCAACAATGCAGACCTGATACGAAAATTAAGTCAAAAGAAGAAGAAACAAGACGTTTTCAAATCACCGCAGCAAAAGCAATCGCCAAGACGTCATACAGGACAACGACCTAGAACAGGTCGCAGTCTCGCTTTTGCTGATTGATAAGATATTGCACGTAAACGAGGTTTGTAGATACATTTAATTTGCACATAGGGACTGCTGTGGGGTTCTTCGTGGACTGCTGTGGTGGATAGAGCATCAGATTCAGAGCGAGATTTTTGAGCCTCGAATGTTTTACAACAAATCTGGATATTATATCGGAGAAGTAAAATTTTATCTTCCAAAGGCATTATATACTCCATGTTTTGTCTGACGCGTTAAGCTCCATTAACGGTATTAGGCAAAAACTTCGTAGAAATCTAATATCAAATAGCTCTATTAACTTAGTTAGTGGCAGAATATTAGAACGGCTGTGACGGAATAAGCAGCTGAGTATAGAATCGCCCTTATATGGTGCCTGCGAGCGTAGAGAGTGTCATTTGAATGTTGGACTTGATCTAAGATTTAACTCGCTACAGTATAGGAGATAACTTGACATGTTTGTACAGATAATTTTTTAGTTCGTTGTTTCTACTTGACACAAATTTCTTTTTCCAATGTTTAAGCTAAATTTCATCATGTCCTGGGTGCAATATTGAAGTTGCATAGTTCGCTTGCGCGACTGGCTGGCAGCCCTGATTTCATGGCCTAATACCAAAGCGAGCAGTCTGAAGTGACAATTTTGAAAATTTCTGACTGCAGTACTGGGGAACATTTTGGACAAAGTAATCTAACGCAAGTGAAAATTTATGTACTTTCCCTTTTAGTGTGAGCTTGCTTATTTGAGCGAGTTTTGCAAAGTCCCCGTGCCTTATTAAACAAAGGGGGCTTTTTGTAAGATGAGTAGATAGACTATTATAGTTGACAGTCAAAGTTTTGCTTGCATAAATTGCTCCAATAAAATCTAAGTGTGGGCCTCCTGACACAGGCTTTCTATTTTAAAGCACTGTTACGATTTATACCATAGACTCTAAACTAAAAATGTTTTACCGAAGCCCTGAGAGAGAGAGAAACCCTTTTCTCGGCAAACTTTTGAATTTCCATCATAGAGAAACCCGAATTGCGAAACCTAATAAAACACATTTGCACAGATCTATGCTGCGTTATTTGCACTTATTTTTTTTTGCATCAAACGATGTTTTTCGTCGAAACTTTTACAGTCTTAAAAGCTAGCTTTCATAACATAATTTAAAGCAAGATTGACTTATTTGTAAATAATTATTGAGTACCAAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00200 all species →	Disintegrin	Disintegrin	Domain	Interproscan
PF13574 all species →	Reprolysin_2	Metallo-peptidase family M12B Reprolysin-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR001762 all species →	Domain	Disintegrin domain	Interproscan
IPR036436 all species →	Homologous_superfamily	Disintegrin domain superfamily	Interproscan
IPR051489 all species →	Family	Disintegrin and Metalloproteinase Domain-Containing	Interproscan
IPR001590 all species →	Domain	Peptidase M12B, ADAM/reprolysin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45702 all species →	ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006509 all species →	Biological Process	membrane protein ectodomain proteolysis	Interproscan
GO:0007219 all species →	Biological Process	Notch signaling pathway	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold167.g2.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.