Genomic Location: scaffold167:429867...457545
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita · all data for this species · gene families
| CDS |
| scaffold167.g34.t2 |
| Transcript |
| scaffold167.g34.t2 |
| Protein |
| scaffold167.g34.t2 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08321 all species → | PPP5 | PPP5 TPR repeat region | Repeat | Interproscan |
| PF13181 all species → | TPR_8 | Tetratricopeptide repeat | Repeat | Interproscan |
| PF00149 all species → | Metallophos | Calcineurin-like phosphoesterase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR019734 all species → | Repeat | Tetratricopeptide repeat | Interproscan |
| IPR013235 all species → | Domain | PPP domain | Interproscan |
| IPR041753 all species → | Domain | PP5, C-terminal metallophosphatase domain | Interproscan |
| IPR006186 all species → | Domain | Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase | Interproscan |
| IPR004843 all species → | Domain | Calcineurin-like phosphoesterase domain, ApaH type | Interproscan |
| IPR011990 all species → | Homologous_superfamily | Tetratricopeptide-like helical domain superfamily | Interproscan |
| IPR029052 all species → | Homologous_superfamily | Metallo-dependent phosphatase-like | Interproscan |
| IPR051134 all species → | Family | Protein Phosphatase PPP | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45668 all species → | SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0016787 all species → | Molecular Function | hydrolase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K04460 | PPP5C; serine/threonine-protein phosphatase 5 | EC:3.1.3.16 | Protein phosphatases and associated proteins | ko01009 | deepkoala |
Transcript abundance of scaffold167.g34.t2 across 22 RNA-seq samples of Aurelia aurita. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| complete polyp | 3 | 0 | 0.00 | 0.00 | |
| polyp not induced | 2 | 0 | 0.00 | 0.00 | |
| polyp endoderm from body column | 1 | 0 | 0.00 | 0.00 | |
| jellyfish bell edge | 1 | 0 | 0.00 | 0.00 | |
| strobila non-segmented part | 1 | 0 | 0.00 | 0.00 | |
| polyp 12h induction with 5M2MI +20C | 1 | 0 | 0.00 | 0.00 | |
| polyp 24h induction with 5M2MI | 1 | 0 | 0.00 | 0.00 | |
| strobila segments | 1 | 0 | 0.00 | 0.00 | |
| strobila heads | 1 | 0 | 0.00 | 0.00 | |
| polyp 24h induction with 5M2MI +20C | 1 | 0 | 0.00 | 0.00 | |
| jellyfish ropalia | 1 | 0 | 0.00 | 0.00 | |
| polyp head region | 1 | 0 | 0.00 | 0.00 | |
| polyp 20h induction with 5M2MI +20C | 1 | 0 | 0.00 | 0.00 | |
| complete strobila | 1 | 0 | 0.00 | 0.00 | |
| 13 jellyfish ropalia | 1 | 0 | 0.00 | 0.00 | |
| complete juvenile jellyfish | 1 | 0 | 0.00 | 0.00 | |
| polyp ectoderm from body column | 1 | 0 | 0.00 | 0.00 | |
| jellyfish bell edge without ropalia | 1 | 0 | 0.00 | 0.00 | |
| 3 juvenile jellyfish (~7mm in diameter) | 1 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (AAURI1_TPM,
StringTie quantification over 22 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
