Genomic Location: scaffold167:56347...65885
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita · all data for this species · gene families
| CDS |
| scaffold167.g8.t2 |
| Transcript |
| scaffold167.g8.t2 |
| Protein |
| scaffold167.g8.t2 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00060 all species → | Lig_chan | Ligand-gated ion channel | Family | Interproscan |
| PF07885 all species → | Ion_trans_2 | Ion channel | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001320 all species → | Domain | Ionotropic glutamate receptor, C-terminal | Interproscan |
| IPR013099 all species → | Domain | Potassium channel domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11537 all species → | VOLTAGE-GATED POTASSIUM CHANNEL | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0015276 all species → | Molecular Function | ligand-gated monoatomic ion channel activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0005249 all species → | Molecular Function | voltage-gated potassium channel activity | Interproscan |
| GO:0005251 all species → | Molecular Function | delayed rectifier potassium channel activity | Interproscan |
| GO:0008076 all species → | Cellular Component | voltage-gated potassium channel complex | Interproscan |
| GO:0016021 all species → | Cellular Component | membrane | Interproscan |
| GO:0071805 all species → | Biological Process | potassium ion transmembrane transport | Interproscan |
scaffold167.g8.t2.Transcript abundance of scaffold167.g8.t2 across 22 RNA-seq samples of Aurelia aurita. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| complete polyp | 3 | 0 | 0.00 | 0.00 | |
| polyp not induced | 2 | 0 | 0.00 | 0.00 | |
| polyp endoderm from body column | 1 | 0 | 0.00 | 0.00 | |
| jellyfish bell edge | 1 | 0 | 0.00 | 0.00 | |
| strobila non-segmented part | 1 | 0 | 0.00 | 0.00 | |
| polyp 12h induction with 5M2MI +20C | 1 | 0 | 0.00 | 0.00 | |
| polyp 24h induction with 5M2MI | 1 | 0 | 0.00 | 0.00 | |
| strobila segments | 1 | 0 | 0.00 | 0.00 | |
| strobila heads | 1 | 0 | 0.00 | 0.00 | |
| polyp 24h induction with 5M2MI +20C | 1 | 0 | 0.00 | 0.00 | |
| jellyfish ropalia | 1 | 0 | 0.00 | 0.00 | |
| polyp head region | 1 | 0 | 0.00 | 0.00 | |
| polyp 20h induction with 5M2MI +20C | 1 | 0 | 0.00 | 0.00 | |
| complete strobila | 1 | 0 | 0.00 | 0.00 | |
| 13 jellyfish ropalia | 1 | 0 | 0.00 | 0.00 | |
| complete juvenile jellyfish | 1 | 0 | 0.00 | 0.00 | |
| polyp ectoderm from body column | 1 | 0 | 0.00 | 0.00 | |
| jellyfish bell edge without ropalia | 1 | 0 | 0.00 | 0.00 | |
| 3 juvenile jellyfish (~7mm in diameter) | 1 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (AAURI1_TPM,
StringTie quantification over 22 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
