Gene detail

Detailed information of scaffold1672.g2.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold1672:14547...22104
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold1672.g2.t1

agatctcattaaggcttaacaaaatgaaaaaattcgttggtgcggctatgctgtcgttatttactgtttctccttctttcgctgctaaagttgtgattgaccactacatgggtcaaacagagctagaacaatccccagagcgtgtggttgtgattggctttggcccgctagatgcgctggacaactttggtatcgatcctgttgcagtatctaactcttctaatcttcctagttacctttcaaaatacagcaaagataactacacctctgcgggtagtttgtttgaacctgattttgaaaccatctacatgcaaaaaccggatttgattttggttggtccgcgggcgtctgcgaaatatgaagagctgagtgaaattgcccctacagttgtttttgcggcgaaagagaaccaaggctattgggaaggcacgcaagcgcaatggcgcaatattggtaagatcttcaatatcgaagaaaaagtagagcagaaaattgaagcgctagatgctcaattcaaagcaatccgtgactacaaccaatcgaacaaaaatgatgcattaacgattttaagcatgggtgacaatatcagcgcgtttggtgcccagtcgcgatttggtgtcatttataacgactttggcttcttggaaacggttgagcacgtgaaaacgggcactcacggagatgtcatttcttatgagtttattcgtgaagctaacccgaaaaatattctcgtggttgaccgaaattctctgacaggtacgccggataacgatattcgtaaatctatggataacgacttagtcaaagcgactgcggcatataaaaatcataaaatcacttatttagatgtggacgcgtggtacttgtcgatgtctggtgtgacagcaacagaaaaaatggctttcggttcaaacaaagtcgtagacgaggccaatactcagtttgaaaagggcaaggtaacatcgattatcggtccaaatggcgcgggaaagagcacgctgttatctatggcctcgcgcttaacggagcgagatggcggtagtgttatcattgattgcaaggaaatcgcggaatgggacacaaaagagctagcgaaaaaactggcagtacttcgccaagctaactcgattacaatgcggtttaccgtaaaagagttagtctcttttggtcgtttcccatactctaaaggaaatctgactaaagaagatcatgaggtcatagaacaagcgatcgactacttagatttgcaagatattcaagacaaatacttggatgaattaagtggtggtcagcgacagcttgcatttattgctatggtgattgcacaagatacagattatgtctttcttgatgaacctcttaataacttagatatcaaacactctcttcagatcatgaaagttgtgcagcagttagcccatgacatgaataaagccatggtggtcgtgattcatgatattaatttcgcggcgtgttactcagatgtcatattggcgcttaagaaaggtaaagttgtggcgagtggtgcggttgaagatgttattcaagcgtctacgctagaggacatctatgaaacgccatttaacatcatagagttaaacgtgggaatggcgctatcaacccctgttttagctcaagatactgagtcacattttgaagaggtcgttgtatggggaacgaaagtttccagcaacactgagtcgatgtttgcggacgacatgtcactgaagcaagcggatcatatgtctgatttactgcgcgatattcccggtgtggatgttggtggcacacactctgtgaatcaacgtattacgattcgtggtttgagcgaaaccgatttggacattcgtcttgacggtgcttctcagcatgcgagcatgttccatcatattggtaacttgacgttgaaccctgacattctcaaatctgcggacattcaggtaggtaataactctgtgactcaaaacgggttaggcggttcggtctactttgaaacgaaagacgctcgtgacttacttcgttacgatgaaaagtttggtgcgcgtgtttatggcggctatgcatccaacgacaaccaacaaggttcgttgacactgtacggacttttgtccgaaaacattgatgcgatggtctatggccattacgttacgcgtgatgattttgaagatggtgatggcaataaaacctatggtgctgcaggtgatgtttacaacattctggctaagctggggtatgaactaaatgacatccatcgttttgagctctcttatgacatgtaccgagacagtggagattacagtccgcgtcctgatatgtcgggtagtgcaaataatagcctgtcgagcaagttacttatccctacggattatgaccgcgataccgttaccttgagttacgagttgcgaggcgaacaacaccaaggaaacgtcactctttataataccgagacagaaattaaacgtgacgaaacggtgatggcccctcgttggccctcgaaccgtttatcaaagaacaccgccaaaaaccaaaactttggtttgaatggcaaattccagtcagatgttatgttaggtgagtttgataatcgagtcacttatggcttcgactacatggataaaacgtcttcgagttactacggtagtcgtaagtttatggacgaatcggcgatttcaaccgcactgtttgtagaagatcagttcttcttctctgatgccttctttattactgcagatcagtaccaaaacgcgactcaaacttacctgatttacaacttaggtgatgttgagattaaaggctttgaagcaagtgcttcttatggttacgacaagtttaacagcaaactttcttactctaagtcggacaccaaaaacaagaatactggtggtcctgttgctgggggcaatgggcgtagcattgatatgggtgatagcattgctctaactttggattaccagtcagacgctttagaaacgatcttcgggtggaactcaatgtttgttctagaggaagacaacgtctttgatggtcagccaaagaaagcaagttatgatgtgcataatctatacgctcaatgggtgccgtctgatattgatgggctgtcggtgacctttggtattgataatgtatttgacgagttgtacagctctcatgcgtctcgttcggggactgcacgtggcttcacgcttgatgactacgagccgggtcgcaacttcaagctctctgcagcttatcaattctaacaaggttcttcataggacgtttcaaagtaacgagtaagttcatgattaaagaaagcacccgaat

Transcript

scaffold1672.g2.t1

AGATCTCATTAAGGCTTAACAAAATGAAAAAATTCGTTGGTGCGGCTATGCTGTCGTTATTTACTGTTTCTCCTTCTTTCGCTGCTAAAGTTGTGATTGACCACTACATGGGTCAAACAGAGCTAGAACAATCCCCAGAGCGTGTGGTTGTGATTGGCTTTGGCCCGCTAGATGCGCTGGACAACTTTGGTATCGATCCTGTTGCAGTATCTAACTCTTCTAATCTTCCTAGTTACCTTTCAAAATACAGCAAAGATAACTACACCTCTGCGGGTAGTTTGTTTGAACCTGATTTTGAAACCATCTACATGCAAAAACCGGATTTGATTTTGGTTGGTCCGCGGGCGTCTGCGAAATATGAAGAGCTGAGTGAAATTGCCCCTACAGTTGTTTTTGCGGCGAAAGAGAACCAAGGCTATTGGGAAGGCACGCAAGCGCAATGGCGCAATATTGGTAAGATCTTCAATATCGAAGAAAAAGTAGAGCAGAAAATTGAAGCGCTAGATGCTCAATTCAAAGCAATCCGTGACTACAACCAATCGAACAAAAATGATGCATTAACGATTTTAAGCATGGGTGACAATATCAGCGCGTTTGGTGCCCAGTCGCGATTTGGTGTCATTTATAACGACTTTGGCTTCTTGGAAACGGTTGAGCACGTGAAAACGGGCACTCACGGAGATGTCATTTCTTATGAGTTTATTCGTGAAGCTAACCCGAAAAATATTCTCGTGGTTGACCGAAATTCTCTGACAGGTACGCCGGATAACGATATTCGTAAATCTATGGATAACGACTTAGTCAAAGCGACTGCGGCATATAAAAATCATAAAATCACTTATTTAGATGTGGACGCGTGGTACTTGTCGATGTCTGGTGTGACAGCAACAGAAAAAATGGCTTTCGGTTCAAACAAAGTCGTAGACGAGGCCAATACTCAGTTTGAAAAGGGCAAGGTAACATCGATTATCGGTCCAAATGGCGCGGGAAAGAGCACGCTGTTATCTATGGCCTCGCGCTTAACGGAGCGAGATGGCGGTAGTGTTATCATTGATTGCAAGGAAATCGCGGAATGGGACACAAAAGAGCTAGCGAAAAAACTGGCAGTACTTCGCCAAGCTAACTCGATTACAATGCGGTTTACCGTAAAAGAGTTAGTCTCTTTTGGTCGTTTCCCATACTCTAAAGGAAATCTGACTAAAGAAGATCATGAGGTCATAGAACAAGCGATCGACTACTTAGATTTGCAAGATATTCAAGACAAATACTTGGATGAATTAAGTGGTGGTCAGCGACAGCTTGCATTTATTGCTATGGTGATTGCACAAGATACAGATTATGTCTTTCTTGATGAACCTCTTAATAACTTAGATATCAAACACTCTCTTCAGATCATGAAAGTTGTGCAGCAGTTAGCCCATGACATGAATAAAGCCATGGTGGTCGTGATTCATGATATTAATTTCGCGGCGTGTTACTCAGATGTCATATTGGCGCTTAAGAAAGGTAAAGTTGTGGCGAGTGGTGCGGTTGAAGATGTTATTCAAGCGTCTACGCTAGAGGACATCTATGAAACGCCATTTAACATCATAGAGTTAAACGTGGGAATGGCGCTATCAACCCCTGTTTTAGCTCAAGATACTGAGTCACATTTTGAAGAGGTCGTTGTATGGGGAACGAAAGTTTCCAGCAACACTGAGTCGATGTTTGCGGACGACATGTCACTGAAGCAAGCGGATCATATGTCTGATTTACTGCGCGATATTCCCGGTGTGGATGTTGGTGGCACACACTCTGTGAATCAACGTATTACGATTCGTGGTTTGAGCGAAACCGATTTGGACATTCGTCTTGACGGTGCTTCTCAGCATGCGAGCATGTTCCATCATATTGGTAACTTGACGTTGAACCCTGACATTCTCAAATCTGCGGACATTCAGGTAGGTAATAACTCTGTGACTCAAAACGGGTTAGGCGGTTCGGTCTACTTTGAAACGAAAGACGCTCGTGACTTACTTCGTTACGATGAAAAGTTTGGTGCGCGTGTTTATGGCGGCTATGCATCCAACGACAACCAACAAGGTTCGTTGACACTGTACGGACTTTTGTCCGAAAACATTGATGCGATGGTCTATGGCCATTACGTTACGCGTGATGATTTTGAAGATGGTGATGGCAATAAAACCTATGGTGCTGCAGGTGATGTTTACAACATTCTGGCTAAGCTGGGGTATGAACTAAATGACATCCATCGTTTTGAGCTCTCTTATGACATGTACCGAGACAGTGGAGATTACAGTCCGCGTCCTGATATGTCGGGTAGTGCAAATAATAGCCTGTCGAGCAAGTTACTTATCCCTACGGATTATGACCGCGATACCGTTACCTTGAGTTACGAGTTGCGAGGCGAACAACACCAAGGAAACGTCACTCTTTATAATACCGAGACAGAAATTAAACGTGACGAAACGGTGATGGCCCCTCGTTGGCCCTCGAACCGTTTATCAAAGAACACCGCCAAAAACCAAAACTTTGGTTTGAATGGCAAATTCCAGTCAGATGTTATGTTAGGTGAGTTTGATAATCGAGTCACTTATGGCTTCGACTACATGGATAAAACGTCTTCGAGTTACTACGGTAGTCGTAAGTTTATGGACGAATCGGCGATTTCAACCGCACTGTTTGTAGAAGATCAGTTCTTCTTCTCTGATGCCTTCTTTATTACTGCAGATCAGTACCAAAACGCGACTCAAACTTACCTGATTTACAACTTAGGTGATGTTGAGATTAAAGGCTTTGAAGCAAGTGCTTCTTATGGTTACGACAAGTTTAACAGCAAACTTTCTTACTCTAAGTCGGACACCAAAAACAAGAATACTGGTGGTCCTGTTGCTGGGGGCAATGGGCGTAGCATTGATATGGGTGATAGCATTGCTCTAACTTTGGATTACCAGTCAGACGCTTTAGAAACGATCTTCGGGTGGAACTCAATGTTTGTTCTAGAGGAAGACAACGTCTTTGATGGTCAGCCAAAGAAAGCAAGTTATGATGTGCATAATCTATACGCTCAATGGGTGCCGTCTGATATTGATGGGCTGTCGGTGACCTTTGGTATTGATAATGTATTTGACGAGTTGTACAGCTCTCATGCGTCTCGTTCGGGGACTGCACGTGGCTTCACGCTTGATGACTACGAGCCGGGTCGCAACTTCAAGCTCTCTGCAGCTTATCAATTCTAACAAGGTTCTTCATAGGACGTTTCAAAGTAACGAGTAAGTTCATGATTAAAGAAAGCACCCGAAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan
PF07715 all species →	Plug	TonB-dependent Receptor Plug Domain	Domain	Interproscan
PF01497 all species →	Peripla_BP_2	Periplasmic binding protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR036942 all species →	Homologous_superfamily	TonB-dependent receptor-like, beta-barrel domain superfamily	Interproscan
IPR012910 all species →	Domain	TonB-dependent receptor, plug domain	Interproscan
IPR002491 all species →	Domain	ABC transporter periplasmic binding domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR051535 all species →	Family	Bacterial siderophore ABC transporter ATP-binding	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR037066 all species →	Homologous_superfamily	TonB-dependent receptor, plug domain superfamily	Interproscan
IPR010917 all species →	Conserved_site	TonB-dependent receptor, conserved site	Interproscan
IPR033870 all species →	Domain	FatB domain	Interproscan
IPR017871 all species →	Conserved_site	ABC transporter-like, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42771 all species →	IRON(3+)-HYDROXAMATE IMPORT ATP-BINDING PROTEIN FHUC	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0006826 all species →	Biological Process	iron ion transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold1672.g2.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.