Gene detail

Detailed information of scaffold168.g19.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold168:191959...236964
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold168.g19.t2

aaattagtaatatttgtttgctctcaccttcttcagatgctatgaccatttctgtccttttcgcttcttcatcgggcattttcgacgacgatgcatcgatccctccatcaataacagggcggggaatgttaattttcctattttctggaggtatccgtggaggcctttccttcattcccaacccatccaatatctttttcatgaattcttgctttatggcttgttggtgtaaataatcatcgtagcgagttttatgcgttgtgaactctcctcttgtgcttgcctctgcaaattccctccttaacgcaaacgtgattgcaacaatcaaatgaaaaagtgctgtgtgaacgttaaatttcatcgttgatgttcgcgtatacaatttccaaatacgaataaccaaacaactgcaattatatatttggattgagccaggtttttccaccacttgttaacctccaactgcataaagaccacaatttgaaataacagaaggtgtctctccgagcatacgttgatttgtaaaagtgtttcgtttcatttctatgatttgcctggcgctacagatggcaggcccagatctacacggagacacgggacttgtatagaagcgtctgatatcgtttgcaggcaggtctctattcttgcctttccattctaatgagatttgcttcccaaaaaactaatccagatcaacagatcggacaaaagcgagccttcaactctcctcggtgacgtaagtgatatttctaaccagttgacagggggagacaattgatagaataattcgacccctcctcatgaaaacctatacacgtcacagacctgtacatcaaactgcttgtcatatgaatctggaaattgggttcggtggatcagtttcattctcttatcccaaatagcaaatcttgttaattaatcatccttgcttgtccaataaattctcgatatcagcccctcaaaaagaaaatcatatcatcacttcgtgttataagtgcagtaccccgcccagtacacccttaaggaatctgaaaacactgtcacggttttgttatcaagccctgccctgtgacgtcatgcttgcttgtccaataactcctgcatattagccccccttctcatttcaaaaaccatcttgtcatcaagtactgtaactagcccagtacacccttataagggctgtgaaaacactgtctcgacttcgttattaagtcctttgacgtcttgctttgattgtccattaaatcctgaattccagcccctcaccttattccaaaaacaatcctgtcagcaagtgttgtaaccagccagtacaacttttatcaggactccgaaaacgatatcgctttttttatcaagtcctgtgtggcgtcttgcttgcttgttcaatgaatactgaattccagcccctaattttatcaaaaaacaatcctgtcatcgggttttacttgcattccaataaagcctccttgcttttaaaaaacaaagtctagacttcgttctcgtgttctgtgaaatgacgctataaactgggcatgtcttattggagaacctgccgttgtattcagtattgatgacagaggtgttcctaaaagggtctggggcgagcgaaattgtggcagtttcataggaagctgcatagattcaacaatgctcatcttgagaaccactgcagtgaataagatggagcagcactaaaaagttggccgcgttttaatttgaaaatacgaaatagaggctgcacaagttttgggatcattcctatcattcccaaattttgtaatggcggacgaagaagttgaaaagaagcgggcgcatgaatctgacgcggagagtgaagaagatgagttcgttggtccattgccagtacagccaaagctcaagaagagaaaagtgcttgagtttgaacaagtatacttgagcaatctaccatgcgcagaaggatatgaaaaaagttttatgcacagagatgttatcacacatgtagctgtcacctgcacaaacttcttcataactgctagttgtgatggccatgtgaaattctggaagaaaactggtgatgaggtggagtttgtcaaacatttcagggctcatcttggagctattcaagatgtttcaacaagtcctgatgggatgctgtattgctctgttgcagatgataaagctgttaaaatatttgatgttgtcaattttgacatgatcaatatgatgaaactagaatttacacccttctgttgtgagtgggtttatagaaagggagatgcaatttctgcgctggcaatatctgataaagacactggcgtaataaagatatatgatggtagaggcagcaacacaccaatgaaaactcttaatttgcacacaaaacaaatatcttgcatcaagtacaatccagcttttgacatcgcactatcagcagataaagctgacacagatttgtttgaatttgttatgtgcaagactcacccaacatcgatatcgttctcaactgatggaaaacagtttgtcacaacaagttctgatagaaagtgcaagactcacccaacatcgatatcgttctcaactgatggaaaacagtttgtcacaacaagttctgatagaaaggttagagttttccggtttcagactggcaaaaagacgagagtgtttgatgaaagtttgcagatatttagtgacttacaacaggaaaaacaattattaccgaatatggagtttggtaggagagtcgcagcagaaagggaaattgaaaagtcagattcattgcgcatggccaatgcagaaagtgagaaagctgggcttcggctcaacattaagaaaacgaaagtaatggttacatcaagtgagctggaagactttataattggggacgaggatgaaacagttgaagtcgtagatagcttcatattcctcggtgctaaaatcgaaagagatggaggttgcacatcagaaattatcagaagaattgccatgggcaaggcggcgatgacaggtctccatagagtcatgaaagacaaagaaatatcaatgcatacgaaagtgcgcctagttaaagcattagttttccctgtaatgatgtatggctgtgagagctggacaatcaggaaaagtgaaagaaggaagattgatgcgtttgagctatggtgttggcgtagaatactgagaataccatggacagcaagaagaacaaataagtctgtgttggaagaaataaagccagaaatttcattagaaggcatgattataaaacaagcactgaccttcttcggacatacaatacgagctaatgggatggagaaagatattatgttagggagggtagaggggacaagaagacgaggcaggcaaagaacaagatggctggatgtgttgaaagaattaactgggatgtccttgcataaacttaatgaaaaagcaatgaacagaacagaacggagattgtttgttcagagggtcgccagaagtcgccagcgacttgatgtttttgatgaaagtggatatttcatattgtactcaactatgttaggaatcaaagttgtcaacatcttcacaaacaaatgcgtcaagattttgggtaaggatgaaaacgtgagattttttgggatagcgcttcaccaagaaaaagcagtcgaagataaagctgccatgacattagaaattgcagcggcacaaaaattggattctgatacctcgattgcggacccaactatcatctgttgtggatacaagaaaaatcgattttatttcttcacaagaagagaaccaagtgatgaccacacggatcgagatgtgtttaacgagaaaccttcaagggaagaaatcatagctgcaacacaggataccgggccaaaggtgctagcagaaactgtggtgatgcatacaacaatgggagatattcacttcaaattattcccaaaagaatgtccaaagacagtagaaaattttgttacgcattgcaagaatggttattacgcaggtcatatatttcatcgagtaatcaaacaatttatgttgcaaactggagacccctcaggtgacggcactggaggtgaatcgatatggggttgcgagtttgaagatgagtttcaccatacattacgtcacgatcgtccatacacgctgagcatggcaaatgctggtgcaaacacaaatggctcacaattcttcatcactgtggtaccaacgccttggttagacaacaagcacaccgtctttggtcgtgtcacaaaaggtatggatgtgatacagaagatgagccaagtgaagacaaatcctcgcaatgacaaaccttatgacgatattaaaatcatcaatatggcagttaaatgaagagcacggcgagtcaaggaattgctgcatgttggttaaaaaaaactgatagttcaaaattgaactaattaagaccaactatttacacaaaaaggaatactaattacaatgaatagataaatacatgattataatacagaaatatttctggtgaaattcccacggactctttatctacatattttgcatgagcaactgtcacccttccactctttaattgatctcttaaagctagcactggttgccaggctttttattgagtccgacaaagtgttccaaaggatggcccccctgaaagataatgaatcatttccatatgacaaggtgttggtgcttggtaaccgtagaagatttttagtccttaggttataggctacatcttttgcctggaagatattccacataaaagatggattttccgaattgaggcatttatatatttccagcattaatttttgcaaatttcgagtgtgaatagcacattcgctacccctagctaagagttcagcaaagggggctgcgaaatcctcccacattattctcagtgcccttttatggactctgtttattgctgcattggcatctttcccacagaacatccagattaaaggacaataattaaaatttgacatgataaatgtattataaagaatacgcctcttgtcctgatctaaatattctgctactcgtgaaaacgcactggtcttgttgttggcttttgtgcaaagtgtttttacatgttcggaaaattttagccgggggtcaatagtaatacctaagagtttcactgtgctagttgcaggaatcggtttcttatcaatttcaaacatgtattcctggcctggtttcagcccaagaaacatgacttgaaatttggaaggatttgcaaccattccattgtcccgaaaccaacacagcgcattatgggtatcattcttaagacaggatataacatgttctaggttttgactgcatgcatatattgtattgtcatctgcaaaattacagaactctgacttagtaatggcatatgtgaaatcgttcatgaagaagttaaacagaaatggacctaacactgaaccttgggggacacctgattctatgttttgccattcgctaaatgagttgccacatttgactcgttgcttcctgtttgagaggtaacttgaaaagagtttcaggctttttagaccaaaaccataggcagccagcttagctattaagagatcatgtggaaggcagtcgtaagcttttgacaaatccatcagtaccattcccacatagccctttttatccagtgtactgcgacaagcttcaataagacggaacagcgcgt

Transcript

scaffold168.g19.t2

AAATTAGTAATATTTGTTTGCTCTCACCTTCTTCAGATGCTATGACCATTTCTGTCCTTTTCGCTTCTTCATCGGGCATTTTCGACGACGATGCATCGATCCCTCCATCAATAACAGGGCGGGGAATGTTAATTTTCCTATTTTCTGGAGGTATCCGTGGAGGCCTTTCCTTCATTCCCAACCCATCCAATATCTTTTTCATGAATTCTTGCTTTATGGCTTGTTGGTGTAAATAATCATCGTAGCGAGTTTTATGCGTTGTGAACTCTCCTCTTGTGCTTGCCTCTGCAAATTCCCTCCTTAACGCAAACGTGATTGCAACAATCAAATGAAAAAGTGCTGTGTGAACGTTAAATTTCATCGTTGATGTTCGCGTATACAATTTCCAAATACGAATAACCAAACAACTGCAATTATATATTTGGATTGAGCCAGGTTTTTCCACCACTTGTTAACCTCCAACTGCATAAAGACCACAATTTGAAATAACAGAAGGTGTCTCTCCGAGCATACGTTGATTTGTAAAAGTGTTTCGTTTCATTTCTATGATTTGCCTGGCGCTACAGATGGCAGGCCCAGATCTACACGGAGACACGGGACTTGTATAGAAGCGTCTGATATCGTTTGCAGGCAGGTCTCTATTCTTGCCTTTCCATTCTAATGAGATTTGCTTCCCAAAAAACTAATCCAGATCAACAGATCGGACAAAAGCGAGCCTTCAACTCTCCTCGGTGACGTAAGTGATATTTCTAACCAGTTGACAGGGGGAGACAATTGATAGAATAATTCGACCCCTCCTCATGAAAACCTATACACGTCACAGACCTGTACATCAAACTGCTTGTCATATGAATCTGGAAATTGGGTTCGGTGGATCAGTTTCATTCTCTTATCCCAAATAGCAAATCTTGTTAATTAATCATCCTTGCTTGTCCAATAAATTCTCGATATCAGCCCCTCAAAAAGAAAATCATATCATCACTTCGTGTTATAAGTGCAGTACCCCGCCCAGTACACCCTTAAGGAATCTGAAAACACTGTCACGGTTTTGTTATCAAGCCCTGCCCTGTGACGTCATGCTTGCTTGTCCAATAACTCCTGCATATTAGCCCCCCTTCTCATTTCAAAAACCATCTTGTCATCAAGTACTGTAACTAGCCCAGTACACCCTTATAAGGGCTGTGAAAACACTGTCTCGACTTCGTTATTAAGTCCTTTGACGTCTTGCTTTGATTGTCCATTAAATCCTGAATTCCAGCCCCTCACCTTATTCCAAAAACAATCCTGTCAGCAAGTGTTGTAACCAGCCAGTACAACTTTTATCAGGACTCCGAAAACGATATCGCTTTTTTTATCAAGTCCTGTGTGGCGTCTTGCTTGCTTGTTCAATGAATACTGAATTCCAGCCCCTAATTTTATCAAAAAACAATCCTGTCATCGGGTTTTACTTGCATTCCAATAAAGCCTCCTTGCTTTTAAAAAACAAAGTCTAGACTTCGTTCTCGTGTTCTGTGAAATGACGCTATAAACTGGGCATGTCTTATTGGAGAACCTGCCGTTGTATTCAGTATTGATGACAGAGGTGTTCCTAAAAGGGTCTGGGGCGAGCGAAATTGTGGCAGTTTCATAGGAAGCTGCATAGATTCAACAATGCTCATCTTGAGAACCACTGCAGTGAATAAGATGGAGCAGCACTAAAAAGTTGGCCGCGTTTTAATTTGAAAATACGAAATAGAGGCTGCACAAGTTTTGGGATCATTCCTATCATTCCCAAATTTTGTAATGGCGGACGAAGAAGTTGAAAAGAAGCGGGCGCATGAATCTGACGCGGAGAGTGAAGAAGATGAGTTCGTTGGTCCATTGCCAGTACAGCCAAAGCTCAAGAAGAGAAAAGTGCTTGAGTTTGAACAAGTATACTTGAGCAATCTACCATGCGCAGAAGGATATGAAAAAAGTTTTATGCACAGAGATGTTATCACACATGTAGCTGTCACCTGCACAAACTTCTTCATAACTGCTAGTTGTGATGGCCATGTGAAATTCTGGAAGAAAACTGGTGATGAGGTGGAGTTTGTCAAACATTTCAGGGCTCATCTTGGAGCTATTCAAGATGTTTCAACAAGTCCTGATGGGATGCTGTATTGCTCTGTTGCAGATGATAAAGCTGTTAAAATATTTGATGTTGTCAATTTTGACATGATCAATATGATGAAACTAGAATTTACACCCTTCTGTTGTGAGTGGGTTTATAGAAAGGGAGATGCAATTTCTGCGCTGGCAATATCTGATAAAGACACTGGCGTAATAAAGATATATGATGGTAGAGGCAGCAACACACCAATGAAAACTCTTAATTTGCACACAAAACAAATATCTTGCATCAAGTACAATCCAGCTTTTGACATCGCACTATCAGCAGATAAAGCTGACACAGATTTGTTTGAATTTGTTATGTGCAAGACTCACCCAACATCGATATCGTTCTCAACTGATGGAAAACAGTTTGTCACAACAAGTTCTGATAGAAAGTGCAAGACTCACCCAACATCGATATCGTTCTCAACTGATGGAAAACAGTTTGTCACAACAAGTTCTGATAGAAAGGTTAGAGTTTTCCGGTTTCAGACTGGCAAAAAGACGAGAGTGTTTGATGAAAGTTTGCAGATATTTAGTGACTTACAACAGGAAAAACAATTATTACCGAATATGGAGTTTGGTAGGAGAGTCGCAGCAGAAAGGGAAATTGAAAAGTCAGATTCATTGCGCATGGCCAATGCAGaaagtgagaaagctgggcttcggctcaacattaagaaaacgaaagtaatggttacatcaagtgagctggaagactttataattggggacgaggatgaaacagttgaagtcgtagatagcttcatattcctcggtgctaaaatcgaaagagatggaggttgcacatcagaaattatcagaagaattgccatgggcaaggcggcgatgacaggtctccatagagtcatgaaagacaaagaaatatcaatgcatacgaaagtgcgcctagttaaagcattagttttccctgtaatgatgtatggctgtgagagctggacaatcaggaaaagtgaaagaaggaagattgatgcgtttgagctatggtgttggcgtagaatactgagaataccatggacagcaagaagaacaaataagtctgtgttggaagaaataaagccagaaatttcattagaaggcatgattataaaacaagcactgaccttcttcggacatacaatacgagctaatgggatggagaaagatattatgttagggagggtagaggggacaagaagacgaggcaggcaaagaacaagatggctggatgtgttgaaagaattaactgggatgtccttgcataaacttaatgaaaaagcaatgaacagaacagaacggagattgtttgttcagagggtcgccagaagtcgccagcgacttgatgTTTTTGATGAAAGTGGATATTTCATATTGTACTCAACTATGTTAGGAATCAAAGTTGTCAACATCTTCACAAACAAATGCGTCAAGATTTTGGGTAAGGATGAAAACGTGAGATTTTTTGGGATAGCGCTTCACCAAGAAAAAGCAGTCGAAGATAAAGCTGCCATGACATTAGAAATTGCAGCGGCACAAAAATTGGATTCTGATACCTCGATTGCGGACCCAACTATCATCTGTTGTGGATACAAGAAAAATCGATTTTATTTCTTCACAAGAAGAGAACCAAGTGATGACCACACGGATCGAGATGTGTTTAACGAGAAACCTTCAAGGGAAGAAATCATAGCTGCAACACAGGATACCGGGCCAAAGGTGCTAGCAGAAACTGTGGTGATGCATACAACAATGGGAGATATTCACTTCAAATTATTCCCAAAAGAATGTCCAAAGACAGTAGAAAATTTTGTTACGCATTGCAAGAATGGTTATTACGCAGGTCATATATTTCATCGAGTAATCAAACAATTTATGTTGCAAACTGGAGACCCCTCAGGTGACGGCACTGGAGGTGAATCGATATGGGGTTGCGAGTTTGAAGATGAGTTTCACCATACATTACGTCACGATCGTCCATACACGCTGAGCATGGCAAATGCTGGTGCAAACACAAATGGCTCACAATTCTTCATCACTGTGGTACCAACGCCTTGGTTAGACAACAAGCACACCGTCTTTGGTCGTGTCACAAAAGGTATGGATGTGATACAGAAGATGAGCCAAGTGAAGACAAATCCTCGCAATGACAAACCTTATGACGATATTAAAATCATCAATATGGCAGTTAAATGAAGAGCACGGCGAGTCAAGGAATTGCTGCATGttggttaaaaaaaactgatagttcaaaattgaactaattaagaccaactatttacacaaaaaggaatactaattacaatgaatagataaatacatgattataatacagaaatatttctggtgaaattcccacggactctttatctacatattttgcatgagcaactgtcacccttccactctttaattgatctcttaaagctagcactggttgccaggctttttattgagtccgacaaagtgttccaaaggatggcccccctgaaagataatgaatcatttccatatgacaaggtgttggtgcttggtaaccgtagaagatttttagtccttaggttataggctacatcttttgcctggaagatattccacataaaagatggattttccgaattgaggcatttatatatttccagcattaatttttgcaaatttcgagtgtgaatagcacattcgctacccctagctaagagttcagcaaagggggctgcgaaatcctcccacattattctcagtgcccttttatggactctgtttattgctgcattggcatctttcccacagaacatccagattaaaggacaataattaaaatttgacatgataaatgtattataaagaatacgcctcttgtcctgatctaaatattctgctactcgtgaaaacgcactggtcttgttgttggcttttgtgcaaagtgtttttacatgttcggaaaattttagccgggggtcaatagtaatacctaagagtttcactgtgctagttgcaggaatcggtttcttatcaatttcaaacatgtattcctggcctggtttcagcccaagaaacatgacttgaaatttggaaggatttgcaaccattccattgtcccgaaaccaacacagcgcattatgggtatcattcttaagacaggatataacatgttctaggttttgactgcatgcatatattgtattgtcatctgcaaaattacagaactctgacttagtaatggcatatgtgaaatcgttcatgaagaagttaaacagaaatggacctaacactgaaccttgggggacacctgattctatgttttgccattcgctaaatgagttgccacatttgactcgttgcttcctgtttgagaggtaacttgaaaagagtttcaggctttttagaccaaaaccataggcagccagcttagctattaagagatcatgtggaaggcagtcgtaagcttttgacaaatccatcagtaccattcccacatagccctttttatccagtgtactgcgacaagcttcaataagacggaacagCGCGT

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF00160 all species →	Pro_isomerase	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002130 all species →	Domain	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR029000 all species →	Homologous_superfamily	Cyclophilin-like domain superfamily	Interproscan
IPR044666 all species →	Family	Cyclophilin-type peptidyl-prolyl cis-trans isomerase, cyclophilin A-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45625 all species →	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000413 all species →	Biological Process	protein peptidyl-prolyl isomerization	Interproscan
GO:0003755 all species →	Molecular Function	peptidyl-prolyl cis-trans isomerase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12736	PPWD1; peptidylprolyl isomerase domain and WD repeat-containing protein 1	EC:5.2.1.8	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.