Gene detail

Detailed information of scaffold169.g20.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold169:329236...345485
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold169.g20.t2

cttgcagagctcgtgaacaagaggcaaatatgttttttatgcgcgcgcatgttggagaccaattccgacagtttatacaatggaactagacgcttcacagataaattatgacaatgaagaaactgacaaaaaagaagtgggatacggcaaagtggagcaaactaatgttagaagaaaattgttccaagaagatggcacagaaaataatgaagagtaccaggactttgggacagtcactatttgcgagcaaggcaatcaaatggcccagaaaaattggaatcgagaaacgaaagatgaaaacagaactgaaagtaagagttatgggaaagaagaaggggtagtagtgttgctgattagtttttgcaaagatgttcagttgatgaatttgatcgaagaaagagcaaaagttctcgcaacggaaatcgaagtctgccattgttttcctgaatcatcatttcgaatttgttcccttcggacatacagcctcatctttctggacctgaatggtgatgtcattgagaactttttcagagtttctttggcaataaggtcttcaaccttctcaaatcatagcactcctataattggcttcaagcatgctgatacaatcaaagatgatcgttggaaaaattatggaataacagaaatcatttatggtccattgtatcattccgctattgatggtgtccttggaaagtttattagccaaacagtcaaaagagaacctcaagatgccgatgataaagtgaacagaaacctcgctttcattgcatcaacaagtggaagacaagatgaaaagaggccaccatcttaccaaaaagctaccagccaaagcctcgatgtcaacttctcaaagcatccttggacatcgaaccgaagcaatgcaagtccaatgccagcatgtgattcgactgatcaagttgctccttactgcgaatcagaaaattcggaatcagcaattcatcaaatagaaggacagtcaggttatgtcgatgataaaatcacaatacctcaaagttgcacgacttatttgacaacgggtcaaagttccttaccaacctactcatctcattgtcagatgcaacttgctagctctaatgccaatcgacaaattcagtcagaatctgtcatgccaaattctaatagtggtgccgtgacccacctcgatgtcaacttctcaaagcatccatggacatcaaatcgaagcaatgcaagtccaatgccagcatgtgattcgactgatcaagttgctccttactgcgaatcagaaaattcggaatcagcaattcatcaaatagaaggacagtcaggttatgtggatgataaaacaacaatacctcaaagttgcacgacttatttgacaacaggtcaaagttccttaccaacctactcatctcattgtcagatgcaacttgctagttctaatgccaatcgacaaatccagtcagaatctgtcatgacaaatgctaatagtggtgccgtgacccagttagatgtcaatgctgcaaaacaaaatccttcagggtggaatgtcattcaacagattctagatttgcatcaaaatgttcaaaaagatgtggacagcaagccaaaggttggaactctatcaggcagcaacacaacaccaataactaaagcaccaactagccagccatctgcaactccgtctgcaactgtttatccaagtacttgccaatacccacaaaggtcctaccaagggaattctgtgtttacgacccccgtcgtgcctcaaaacacaagttatatggttaatggtacacccggctgttcaaatatgagaatatcaattgttcctgacgattatgcaaaacacagtagcaaagaaagggaaagaagggagagaataaaagaaagttgtgatgagctgagaaaactgttaccgaagcaactaatggctgggagaaggcaagatatggcaacggttctagaattaacagtatattacttgaaagttgtgcaagaacatttgccaacaattatacagcaacagctataccaaaaattcctcaattatcaagacccaaaaagccgaagaaaacgaaaaggagcagaaatgactccatatatggcacaatcaaaatatcaaagacacgccgctggggctgcagcagcaacagcaacagcaacaacagctacaagtgggtatcatttggtaaattacactaatgcaacatacactccacaagcaatgcaatcaaattcacatcagccgacaaacacaggttatttctcatccatataccatccactaatcaccaacccatattatgcaaccatgaacccaaatgcatctcaaactatttatggatctgcatcacatatgcctatgccaatcatggaccatgccatgcatctgagatcacagtattacaatgaaacgatacctacccagagtggcctgccttgttatttagctgtgacgtcatcatcacgtgaccttgcaaacagcaacataacgagatgaagtggttatatttgaagttggtttgaaaacggaaaactttggcaagccatgggtctttttgggattccctgaagaaatgagttggctgacc

Transcript

scaffold169.g20.t2

CTTGCAGAGCTCGTGAACAAGAGGCAAATATGTTTTTTATGCGCGCGCATGTTGGAGACCAATTCCGACAGTTTATACAATGGAACTAGACGCTTCACAGATAAATTATGACAATGAAGAAACTGACAAAAAAGAAGTGGGATACGGCAAAGTGGAGCAAACTAATGTTAGAAGAAAATTGTTCCAAGAAGATGGCACAGAAAATAATGAAGAGTACCAGGACTTTGGGACAGTCACTATTTGCGAGCAAGGCAATCAAATGGCCCAGAAAAATTGGAATCGAGAAACGAAAGATGAAAACAGAACTGAAAGTAAGAGTTATGGGAAAGAAGAAGGGGTAGTAGTGTTGCTGATTAGTTTTTGCAAAGATGTTCAGTTGATGAATTTGATCGAAGAAAGAGCAAAAGTTCTCGCAACGGAAATCGAAGTCTGCCATTGTTTTCCTGAATCATCATTTCGAATTTGTTCCCTTCGGACATACAGCCTCATCTTTCTGGACCTGAATGGTGATGTCATTGAGAACTTTTTCAGAGTTTCTTTGGCAATAAGGTCTTCAACCTTCTCAAATCATAGCACTCCTATAATTGGCTTCAAGCATGCTGATACAATCAAAGATGATCGTTGGAAAAATTATGGAATAACAGAAATCATTTATGGTCCATTGTATCATTCCGCTATTGATGGTGTCCTTGGAAAGTTTATTAGCCAAACAGTCAAAAGAGAACCTCAAGATGCCGATGATAAAGTGAACAGAAACCTCGCTTTCATTGCATCAACAAGTGGAAGACAAGATGAAAAGAGGCCACCATCTTACCAAAAAGCTACCAGCCAAAGCCTCGATGTCAACTTCTCAAAGCATCCTTGGACATCGAACCGAAGCAATGCAAGTCCAATGCCAGCATGTGATTCGACTGATCAAGTTGCTCCTTACTGCGAATCAGAAAATTCGGAATCAGCAATTCATCAAATAGAAGGACAGTCAGGTTATGTCGATGATAAAATCACAATACCTCAAAGTTGCACGACTTATTTGACAACGGGTCAAAGTTCCTTACCAACCTACTCATCTCATTGTCAGATGCAACTTGCTAGCTCTAATGCCAATCGACAAATTCAGTCAGAATCTGTCATGCCAAATTCTAATAGTGGTGCCGTGACCCACCTCGATGTCAACTTCTCAAAGCATCCATGGACATCAAATCGAAGCAATGCAAGTCCAATGCCAGCATGTGATTCGACTGATCAAGTTGCTCCTTACTGCGAATCAGAAAATTCGGAATCAGCAATTCATCAAATAGAAGGACAGTCAGGTTATGTGGATGATAAAACAACAATACCTCAAAGTTGCACGACTTATTTGACAACAGGTCAAAGTTCCTTACCAACCTACTCATCTCATTGTCAGATGCAACTTGCTAGTTCTAATGCCAATCGACAAATCCAGTCAGAATCTGTCATGACAAATGCTAATAGTGGTGCCGTGACCCAGTTAGATGTCAATGCTGCAAAACAAAATCCTTCAGGGTGGAATGTCATTCAACAGATTCTAGATTTGCATCAAAATGTTCAAAAAGATGTGGACAGCAAGCCAAAGGTTGGAACTCTATCAGGCAGCAACACAACACCAATAACTAAAGCACCAACTAGCCAGCCATCTGCAACTCCGTCTGCAACTGTTTATCCAAGTACTTGCCAATACCCACAAAGGTCCTACCAAGGGAATTCTGTGTTTACGACCCCCGTCGTGCCTCAAAACACAAGTTATATGGTTAATGGTACACCCGGCTGTTCAAATATGAGAATATCAATTGTTCCTGACGATTATGCAAAACACAGTAGCAAAGAAAGGGAAAGAAGGGAGAGAATAAAAGAAAGTTGTGATGAGCTGAGAAAACTGTTACCGAAGCAACTAATGGCTGGGAGAAGGCAAGATATGGCAACGGTTCTAGAATTAACAGTATATTACTTGAAAGTTGTGCAAGAACATTTGCCAACAATTATACAGCAACAGCTATACCAAAAATTCCTCAATTATCAAGACCCAAAAAGCCGAAGAAAACGAAAAGGAGCAGAAATGACTCCATATATGGCACAATCAAAATATCAAAGACACGCCGCTGGGgctgcagcagcaacagcaacagcaacaacagcTACAAGTGGGTATCATTTGGTAAATTACACTAATGCAACATACACTCCACAAGCAATGCAATCAAATTCACATCAGCCGACAAACACAGGTTATTTCTCATCCATATACCATCCACTAATCACCAACCCATATTATGCAACCATGAACCCAAATGCATCTCAAACTATTTATGGATCTGCATCACATATGCCTATGCCAATCATGGACCATGCCATGCATCTGAGATCACAGTATTACAATGAAACGATACCTACCCAGAGTGGCCTGCCTTGTTATTTAGCTGTGACGTCATCATCACGTGACCTTGCAAACAGCAACATAACGAGATGAAGTGGTTATATTTGAAGTTGGTTTGAAAACGGAAAACTTTGGCAAGCCATGGGTCTTTTTGGGATTCCCTGAAGAAATGAGTTGGCTGACC

Protein

Gene family

Family type	Membership / link
Transcription factor family	bHLH · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039583 all species →	Family	Transcription factor-like 5/SOLH1/2	Interproscan
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15402 all species →	TRANSCRIPTION FACTOR-LIKE 5 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0007283 all species →	Biological Process	spermatogenesis	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold169.g20.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.