Genomic Location: scaffold17:1509937...1516853
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita · all data for this species · gene families
| CDS |
| scaffold17.g144.t1 |
| Transcript |
| scaffold17.g144.t1 |
| Protein |
| scaffold17.g144.t1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008693 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01248 all species → | Ribosomal_L7Ae | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR018492 all species → | Family | Ribosomal protein eL8/Nhp2 family | Interproscan |
| IPR050257 all species → | Family | Eukaryotic ribosomal RNA-processing and assembly protein | Interproscan |
| IPR004037 all species → | Conserved_site | Large ribosomal subunit protein eL8-like, conserved site | Interproscan |
| IPR029064 all species → | Homologous_superfamily | Ribosomal protein eL30-like superfamily | Interproscan |
| IPR002415 all species → | Family | H/ACA ribonucleoprotein complex, subunit Nhp2-like | Interproscan |
| IPR004038 all species → | Domain | Ribosomal protein eL8/eL30/eS12/Gadd45 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23105 all species → | RIBOSOMAL PROTEIN L7AE FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000398 all species → | Biological Process | mRNA splicing, via spliceosome | Interproscan |
| GO:0000470 all species → | Biological Process | maturation of LSU-rRNA | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0022625 all species → | Cellular Component | cytosolic large ribosomal subunit | Interproscan |
| GO:0030490 all species → | Biological Process | maturation of SSU-rRNA | Interproscan |
| GO:0031428 all species → | Cellular Component | box C/D methylation guide snoRNP complex | Interproscan |
| GO:0032040 all species → | Cellular Component | small-subunit processome | Interproscan |
| GO:0046540 all species → | Cellular Component | U4/U6 x U5 tri-snRNP complex | Interproscan |
| GO:0071011 all species → | Cellular Component | precatalytic spliceosome | Interproscan |
| GO:0042254 all species → | Biological Process | ribosome biogenesis | Interproscan |
| GO:1990904 all species → | Cellular Component | ribonucleoprotein complex | Interproscan |
| GO:0005730 all species → | Cellular Component | nucleolus | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K12845 | SNU13, NHP2L; U4/U6 small nuclear ribonucleoprotein SNU13 | - | Ribosome biogenesis | ko03009 | deepkoala |
Transcript abundance of scaffold17.g144.t1 across 22 RNA-seq samples of Aurelia aurita. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| complete polyp | 3 | 3 | 199.89 | 255.40 | |
| polyp not induced | 2 | 2 | 232.31 | 274.13 | |
| polyp endoderm from body column | 1 | 1 | 277.66 | 277.66 | |
| jellyfish bell edge | 1 | 1 | 286.46 | 286.46 | |
| strobila non-segmented part | 1 | 1 | 299.81 | 299.81 | |
| polyp 12h induction with 5M2MI +20C | 1 | 1 | 185.53 | 185.53 | |
| polyp 24h induction with 5M2MI | 1 | 1 | 284.62 | 284.62 | |
| strobila segments | 1 | 1 | 453.28 | 453.28 | |
| strobila heads | 1 | 1 | 396.72 | 396.72 | |
| polyp 24h induction with 5M2MI +20C | 1 | 1 | 125.10 | 125.10 | |
| jellyfish ropalia | 1 | 1 | 190.50 | 190.50 | |
| polyp head region | 1 | 1 | 244.42 | 244.42 | |
| polyp 20h induction with 5M2MI +20C | 1 | 1 | 197.93 | 197.93 | |
| complete strobila | 1 | 1 | 411.19 | 411.19 | |
| 13 jellyfish ropalia | 1 | 1 | 334.63 | 334.63 | |
| complete juvenile jellyfish | 1 | 1 | 251.90 | 251.90 | |
| polyp ectoderm from body column | 1 | 1 | 121.75 | 121.75 | |
| jellyfish bell edge without ropalia | 1 | 1 | 410.71 | 410.71 | |
| 3 juvenile jellyfish (~7mm in diameter) | 1 | 1 | 497.14 | 497.14 |
| SRA run | Condition | Tissue | Developmental stage | Treatment | Study | TPM |
|---|---|---|---|---|---|---|
| SRR7992486 | complete polyp | complete polyp | polyp | not recorded | SRP164891 | 255.40 |
| SRR7992484 | complete polyp | complete polyp | polyp | not recorded | SRP164891 | 183.98 |
| SRR7992487 | complete polyp | complete polyp | polyp | not recorded | SRP164891 | 160.30 |
| SRR8090261 | polyp not induced | polyp not induced | polyp | not recorded | SRP164891 | 274.13 |
| SRR8090262 | polyp not induced | polyp not induced | polyp | not recorded | SRP164891 | 190.48 |
| SRR7992468 | polyp endoderm from body column | polyp endoderm from body column | polyp | not recorded | SRP164891 | 277.66 |
| SRR8090258 | jellyfish bell edge | jellyfish bell edge | jellyfish | not recorded | SRP164891 | 286.46 |
| SRR8090265 | strobila non-segmented part | strobila non-segmented part | strobila | not recorded | SRP164891 | 299.81 |
| SRR8090264 | polyp 12h induction with 5M2MI +20C | polyp 12h induction with 5M2MI +20C | polyp | not recorded | SRP164891 | 185.53 |
| SRR8090263 | polyp 24h induction with 5M2MI | polyp 24h induction with 5M2MI | polyp | not recorded | SRP164891 | 284.62 |
| SRR8090260 | strobila segments | strobila segments | strobila | not recorded | SRP164891 | 453.28 |
| SRR8090259 | strobila heads | strobila heads | strobila | not recorded | SRP164891 | 396.72 |
| SRR8090256 | polyp 24h induction with 5M2MI +20C | polyp 24h induction with 5M2MI +20C | polyp | not recorded | SRP164891 | 125.10 |
| SRR8090257 | jellyfish ropalia | jellyfish ropalia | jellyfish | not recorded | SRP164891 | 190.50 |
| SRR7992469 | polyp head region | polyp head region | polyp | not recorded | SRP164891 | 244.42 |
| SRR8090255 | polyp 20h induction with 5M2MI +20C | polyp 20h induction with 5M2MI +20C | polyp | not recorded | SRP164891 | 197.93 |
| SRR7992485 | complete strobila | complete strobila | strobila | not recorded | SRP164891 | 411.19 |
| SRR7992483 | 13 jellyfish ropalia | 13 jellyfish ropalia | juvenile jellyfish | not recorded | SRP164891 | 334.63 |
| SRR7992482 | complete juvenile jellyfish | complete juvenile jellyfish | juvenile jellyfish | not recorded | SRP164891 | 251.90 |
| SRR7992481 | polyp ectoderm from body column | polyp ectoderm from body column | polyp | not recorded | SRP164891 | 121.75 |
| SRR7992480 | jellyfish bell edge without ropalia | jellyfish bell edge without ropalia | juvenile jellyfish | not recorded | SRP164891 | 410.71 |
| SRR8090266 | 3 juvenile jellyfish (~7mm in diameter) | 3 juvenile jellyfish (~7mm in diameter) | jellyfish | not recorded | SRP164891 | 497.14 |
Source: CnidoSite RNA-seq expression matrices (AAURI1_TPM,
StringTie quantification over 22 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
Genes whose expression across the transcriptome samples of Aurelia aurita tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
| Direction | Partners | Most correlated partner | PCC |
|---|---|---|---|
| Positively correlated | 0 | not in this network | - |
| Negatively correlated | 0 | not in this network | - |
This gene has no edge at all in the Aurelia aurita network, in either direction — it is not one of the genes the network was built from (the network covers genes with enough expression variation across the transcriptome samples). The counts above are a property of the network, not a failed lookup.
Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list.
Whether this gene can be visualised in the single-cell atlases of Aurelia aurita, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | ready | open → |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
