Gene detail

Detailed information of scaffold17.g2.t2 in Aurelia aurita

Genomic Location: scaffold17:3311...14945
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold17.g2.t2

ctatttacgttttctcacagaatattgactctccgttcgttgtaccttcatcgtctcgtgttcagctgcttcaaagtggttcagcggaacttccagaggttcgcaccgcagagtaagcaccagcagcaaccgtctcggcgttcacctacattgcacctgcaaaatggacaagaacggctcagcttaaaatgaaacaaaagaattaatcgcaaaggacctttgcaatttgttactactgccctttgtgtgtgtggctggcgcagtttaggccagagagcgtttggctgccacatgaacaaataatggagtcatctgactcgtctggcgatggtttgctctcaggaaaagcctcacaaaaagagacaccaacctcaaataaggttctgatcacagtcttgatcttgataattgcaacactagcagtcgcattggtggtcgtactgtcaataaaatcatcgccaacagataagagcaaaggatccacaaatgggttatcaggagcatgccaatctccttacaagcaagacacaacaatgccaaaagacccaactgttttccaggacttatcacctgaagagcagcatgctatacgtgattacatgctgacaaaatcgggcctaaatctaaaggagcatgctaaagcgactcaagattccaactatatctacctcatagagctttacctcccaaacaaagctgatgttctcaactatttagatgcgaaggggaagaagccagctagaagagccagggttgttatcacaaacggaggcaaggccagtccagatgtggaggagtatttagtggaacctttgcccaagccaacaaaacataccaaattgaagctcgcatttcgagcagatccgatcccattcgcatcacgaccttttacggacaaagaagaagaaggcatggacttgataatcaaggatgtttcgaaaacttgttacgcagtattgaaggaaagtttcaatttttggtttcacaactgctccaagaattgccttcgttattacattgatggggtgccagcaaattttcacaatggtcaccgaaagagttggatgatttttttgagagaccgacctggcttcgacctgttacccgtgccttttgaaattcttataaacaccgcagataaagatgccaaaaaatggaaggttgaacaaatctattacaataaccagtacttcacatcagcagcagaactggctcaaaaatatgaaaaaggcaccatcaacaaaactaagtttttcctaagagatgacgttgcactgggagcctcgtttgaaagacgaggcaaatcacatctgaagaagcaaatgagagagccaacatttgtgaatccgcaagggaggcgctacgagatcaatggcaggaagatcagttatatgggctgggattttcattttggtctacgctcaagctcaggccctgcactttatgacatacggttcaacggatctcgaatcatgtatgaactaagtctacaagaagccacatcattctactctgctaatgacccccgtcaaagctcagcacaatacttcgactctgcgtttcggattggctctggaaattacgagttggtaagaggaatagattgccctgaagatgccgtgttcatggacagccatcattttgtggacactgctaagtccatcaaaaacccaaattctgtctgtgtttttgaaattagccatggcatgccccttcgtaggcatattcagtttgactcctcgtggaagttttccttcgtcgcaggcctaatggatagtgctttggtggtaagaaccatattgacaccgcaaaactacgactatgtacttgattatgtcatctaccaaacaggaatgatcgagacaagggtaagcacttcagggtacatcatcgcaagctcgtatttccctgcggagtcaccatacgccttcgagaacctctaccgcaccgaaggaacaatacatgaccatatcatattcttcaaagtggaccttgacgttgctgggcaacaaaatagttaccagacccttgatgttgtgctcaaaaacgtgagctgtccatggaatgatgttggttacataatgaagaagcaagttgagaggaacacgaagaaaactgaaaaggaggctctgcttaaatacaattttgataacccaaagtacctcgttgtttataacgaaaaggagaagaacaaatatggcaatagccgtggttaccgtatccaggcagactccatggtgaagcaaaagtacccggatgaatacttcgtcacaaaggcggcagcttggtcgaaataccagttagcaatcacgaaatataaagatgatgagcgctatggctcatcaatacataaccagtggggtatggacccccctgttttcgatttcgatcactacgttgctgacaatgaaagcatacagcaacaagatctggtggcatgggtttctttaggggggatgcatatacccaacacagaggatgtcccggtcactgttactactggaaatcgcttctcattctttgtccgtccttttggatatttcgatgaggatccctcaatgagctctacaaatgctgttataattcgcgctgatggtaaaggggggacgaaagtggaaacatacggcacaccaagtggcagcagctgccctgtacccgatagaaattttccgtttcagccgtaagacggttgttgtgattaagaaaccttgtgatttcttgtagaagcattgggcagttttagcaagcagtcgtcaaagaacacagcaacataattctcaaagacagtgtctcagaatctagtgattccttgtattcgttctatgattttaatctgatttgttatttatctacagtagcataaccattgggggcaagaaggggcggcgccccccaaccatcgccaaagatgggtcttgtgattattatttttattatcaattaatttctttttcgttggattacaatatatgatagctaaagttagttagctaattaatttcaacatagata

Transcript

scaffold17.g2.t2

CTATTTACGTTTTCTCACAGAATATTGACTCTCCGTTCGTTGTACCTTCATCGTCTCGTGTTCAGCTGCTTCAAAGTGGTTCAGCGGAACTTCCAGAGGTTCGCACCGCAGAGTAAGCACCAGCAGCAACCGTCTCGGCGTTCACCTACATTGCACCTGCAAAATGGACAAGAACGGCTCAGCTTAAAATGAAACAAAAGAATTAATCGCAAAGGACCTTTGCAATTTGTTACTACTGCCCTTTGTGTGTGTGGCTGGCGCAGTTTAGGCCAGAGAGCGTTTGGCTGCCACATGAACAAATAATGGAGTCATCTGACTCGTCTGGCGATGGTTTGCTCTCAGGAAAAGCCTCACAAAAAGAGACACCAACCTCAAATAAGGTTCTGATCACAGTCTTGATCTTGATAATTGCAACACTAGCAGTCGCATTGGTGGTCGTACTGTCAATAAAATCATCGCCAACAGATAAGAGCAAAGGATCCACAAATGGGTTATCAGGAGCATGCCAATCTCCTTACAAGCAAGACACAACAATGCCAAAAGACCCAACTGTTTTCCAGGACTTATCACCTGAAGAGCAGCATGCTATACGTGATTACATGCTGACAAAATCGGGCCTAAATCTAAAGGAGCATGCTAAAGCGACTCAAGATTCCAACTATATCTACCTCATAGAGCTTTACCTCCCAAACAAAGCTGATGTTCTCAACTATTTAGATGCGAAGGGGAAGAAGCCAGCTAGAAGAGCCAGGGTTGTTATCACAAACGGAGGCAAGGCCAGTCCAGATGTGGAGGAGTATTTAGTGGAACCTTTGCCCAAGCCAACAAAACATACCAAATTGAAGCTCGCATTTCGAGCAGATCCGATCCCATTCGCATCACGACCTTTTACGGACAAAGAAGAAGAAGGCATGGACTTGATAATCAAGGATGTTTCGAAAACTTGTTACGCAGTATTGAAGGAAAGTTTCAATTTTTGGTTTCACAACTGCTCCAAGAATTGCCTTCGTTATTACATTGATGGGGTGCCAGCAAATTTTCACAATGGTCACCGAAAGAGTTGGATGATTTTTTTGAGAGACCGACCTGGCTTCGACCTGTTACCCGTGCCTTTTGAAATTCTTATAAACACCGCAGATAAAGATGCCAAAAAATGGAAGGTTGAACAAATCTATTACAATAACCAGTACTTCACATCAGCAGCAGAACTGGCTCAAAAATATGAAAAAGGCACCATCAACAAAACTAAGTTTTTCCTAAGAGATGACGTTGCACTGGGAGCCTCGTTTGAAAGACGAGGCAAATCACATCTGAAGAAGCAAATGAGAGAGCCAACATTTGTGAATCCGCAAGGGAGGCGCTACGAGATCAATGGCAGGAAGATCAGTTATATGGGCTGGGATTTTCATTTTGGTCTACGCTCAAGCTCAGGCCCTGCACTTTATGACATACGGTTCAACGGATCTCGAATCATGTATGAACTAAGTCTACAAGAAGCCACATCATTCTACTCTGCTAATGACCCCCGTCAAAGCTCAGCACAATACTTCGACTCTGCGTTTCGGATTGGCTCTGGAAATTACGAGTTGGTAAGAGGAATAGATTGCCCTGAAGATGCCGTGTTCATGGACAGCCATCATTTTGTGGACACTGCTAAGTCCATCAAAAACCCAAATTCTGTCTGTGTTTTTGAAATTAGCCATGGCATGCCCCTTCGTAGGCATATTCAGTTTGACTCCTCGTGGAAGTTTTCCTTCGTCGCAGGCCTAATGGATAGTGCTTTGGTGGTAAGAACCATATTGACACCGCAAAACTACGACTATGTACTTGATTATGTCATCTACCAAACAGGAATGATCGAGACAAGGGTAAGCACTTCAGGGTACATCATCGCAAGCTCGTATTTCCCTGCGGAGTCACCATACGCCTTCGAGAACCTCTACCGCACCGAAGGAACAATACATGACCATATCATATTCTTCAAAGTGGACCTTGACGTTGCTGGGCAACAAAATAGTTACCAGACCCTTGATGTTGTGCTCAAAAACGTGAGCTGTCCATGGAATGATGTTGGTTACATAATGAAGAAGCAAGTTGAGAGGAACACGAAGAAAACTGAAAAGGAGGCTCTGCTTAAATACAATTTTGATAACCCAAAGTACCTCGTTGTTTATAACGAAAAGGAGAAGAACAAATATGGCAATAGCCGTGGTTACCGTATCCAGGCAGACTCCATGGTGAAGCAAAAGTACCCGGATGAATACTTCGTCACAAAGGCGGCAGCTTGGTCGAAATACCAGTTAGCAATCACGAAATATAAAGATGATGAGCGCTATGGCTCATCAATACATAACCAGTGGGGTATGGACCCCCCTGTTTTCGATTTCGATCACTACGTTGCTGACAATGAAAGCATACAGCAACAAGATCTGGTGGCATGGGTTTCTTTAGGGGGGATGCATATACCCAACACAGAGGATGTCCCGGTCACTGTTACTACTGGAAATCGCTTCTCATTCTTTGTCCGTCCTTTTGGATATTTCGATGAGGATCCCTCAATGAGCTCTACAAATGCTGTTATAATTCGCGCTGATGGTAAAGGGGGGACGAAAGTGGAAACATACGGCACACCAAGTGGCAGCAGCTGCCCTGTACCCGATAGAAATTTTCCGTTTCAGCCGTAAGACGGTTGTTGTGATTAAGAAACCTTGTGATTTCTTGTAGAAGCAttgggcagttttagcaagcagtcgtcaaagaacacagcaacataattctCAAAGACAGTGTCTCAGAATCTAGTGATTCCTTGTATTCGTTCTATGATTTTAATCTGATTTGTTATTTATCTACAGTAGCATAACCATTGGGGGCAAGAAGGGGCGGCGCCCCCCAACCATCGCCAAAGATGGGTCTTGTGAttattatttttattatcaattaatttctttttcgttggattacaatatatgatagctaaagttagttagctaattaatttcaacatagata

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02727 all species →	Cu_amine_oxidN2	Copper amine oxidase, N2 domain	Domain	Interproscan
PF01179 all species →	Cu_amine_oxid	Copper amine oxidase, enzyme domain	Domain	Interproscan
PF09248 all species →	DUF1965	Domain of unknown function (DUF1965)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016182 all species →	Homologous_superfamily	Copper amine oxidase, N-terminal	Interproscan
IPR036460 all species →	Homologous_superfamily	Copper amine oxidase, catalytic domain superfamily	Interproscan
IPR015800 all species →	Domain	Copper amine oxidase, N2-terminal	Interproscan
IPR000269 all species →	Family	Copper amine oxidase	Interproscan
IPR015798 all species →	Domain	Copper amine oxidase, catalytic domain	Interproscan
IPR049948 all species →	Conserved_site	Copper amine oxidase, TPQ-binding site	Interproscan
IPR015328 all species →	Domain	Domain of unknown function DUF1965	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10638 all species →	COPPER AMINE OXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005507 all species →	Molecular Function	copper ion binding	Interproscan
GO:0008131 all species →	Molecular Function	primary methylamine oxidase activity	Interproscan
GO:0009308 all species →	Biological Process	amine metabolic process	Interproscan
GO:0048038 all species →	Molecular Function	quinone binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11182	AOC1, ABP1; diamine oxidase	EC:1.4.3.22	Tryptophan metabolism	ko00380	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.