Gene detail

Detailed information of scaffold17.g58.t2 in Morbakka virulenta

Genomic Location: scaffold17:1646001...1664325
NR annotation: XP_029188093.2, nuclear receptor coactivator 5-like isoform X4 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold17.g58.t2

AAACAGAGTTATGGCAAATTTAGCATTTTGTTCCCTAACCAGTTAAATGAAGGATTATGGATAGCAAAGGAAAAGGAAGACGCTCAAGGTCCAGATCACCACATTCAACCAAATCAGGCTCCTCATCATCTCATAGCCCCTCTCGAAAAAGGGCTGGTAACAAAGGAACAGGAGAAACAGAGAATGGGGATAGCCACATGGAGACAAGAGGAAAGATGAAAGGAGTTAGTAAAGATACAAACAGTAGTGACCCAAAATCTGTACGATGCCGAGTATTTGTTGGTAACCTAGGTAACGTGCCAAAAGAGGATATAATTGAACACTTTCAACAGTATGGTGAAGTGGTCGGTGTATCAATCCATGCAAACTTTGGATTTGTGCAATATAATAATGTAGAGGATGCAGATTTAGCAGTTGGCAAAACAGATGGAACGACGATATTTGGAAAGAGAGTAGACTGTAATATCGCAAGTGAAAGAAGAAAGCCACAGACGAAAGACGCAGATGGCCCTGGATATAATAGAGGGAAGCGTGCCAGGTCACGTTCCCCGCGGGATCGAGATCGCTATCCAAGGGATCCTTCTCCCAGATCGAGATATGACGAACTACTAAGAAGAGATTATGGCAGGATTGATGACCTTGATTATGACCGCCCTCGTTTTGCATCACCTCATCCTGATGATATGTATCGAAGATACCCTGATGATGATTTGCATTGGCCACCATACCGTGATAACGTAAGGAGGCTTGGAACAGATCCATATGCCCGTCATCCACCACTTCCACCACCAAGGCCTCCGAACGACTGTGAAATAGTGTTAGCTAGTAAAGAAACAAGTGGATATGGTGAGCTGATAGAAAGTCGACTACGAAGCATTGGTGTTCTTTCTGCTGTTAGATTTCCAGAACCAGATGTTCCATTGAATGAAATTCTGGAACAAGTTTCTGCAAGAGGAGCCCTCTACTCGATCCTCATTACGGAGACAAACGAGCTACACCGGTCATGTACTTTAAATATTTTACACGGGACTCCACAAGAGCATAGAAATATGCCACTTGAAGATGCACTTGCCCTTGTGGCAAGAAATTTTGAAAGTTATTTGCGAGCATTAAAAGAACGTGGACCTTTTGGTTCCCAGTTACAACAAGATCCTGGTTTTAAGACCTCTTTAGTTCAGGATGCTGAAATTGCTTCTTTACTTAAACTTGCCGCTGGTGGTCGCATTCTAACTGTTGGCGAAATCGATAAATTGATTGATGCATTACGGAAGTATAAATCGGAAATTGAAGCAAAAAACAATCAAAGCACAGGAAACGTCTCTGATGTCAGGGAGTTTAAGAATTCGACAGATAATGTTCCCGTTGGGTACACATACAACGATTCAAGAGGAGTGGGTGGCGGTCAGTCATATCCCCCTTTTGTTCCTACAACCTCGGCTGATATTGGGTACCCAAGAGGTTATGGGGATTCCTACCCGATACCAAAAGGACAGGCTTACCCAACTAGTGTAGCTAGTGCAACAGGGTTGTCAATATCAACAGCAACCTTGCCACTAGTCTAACTTGTCGCCTATGTAATTTTTTAAAAGCAGGTTCAATAATTAGGCAATGTGTAACAGGTATCAACAATCTGCAATCAAAGTCTGATTGCTTAAAGTGTTCCAATAGATACCACAAGTGAACGTATATCAATATAGTGCCCCATAGACATGGAGTGTGAGGTATGAAATGACGCTTCCTTATTTTTTTTAACAGTTTACGACCTTGGCTGATAACTTGCGATTGAATGTACTTTTGAACTGGCTTTCCATCCATGGCACTTGATATACATTATAATCTGACCAGTAGTGGTAATGTCATACTACGGACAAGGAGTAGTATATATAACGTTCCCACAATAGAAAAGTGCACATATGTACCATAATGGCCAAGTTTGGCATTATGAAGATCTTTAAAGCGTGCTGAAACTTTGCTACAATTCGCGCTCAGGGGTAATTAAAGAAGTTAAAAGCGGCATGGAATTTTAACCAATGTTGATATTCTCTCTGTAATATATCTACCAATTTCAAAGCAGAAAAGCCGTCGTCAGAAGGAAGTTGTAATGTTGGTGACGTCTTAGGGGGCAAGATAATTTTAAAGTGGTATTTTTTACTATTCAAGGTCGTCAGAAAACCTAACGTTTTATTGTGAGATCAACATGTAGTTAAAACTGGCTGAAATAACCAGTCGTGTTTACTATACCTTGCTTGAGATTGGAATAGACCTTTTCGTTAAATAGTTTTTCAGCTAAAGCTTGTCAGTCTGCTGGTTTAGAGCCTATTTTTAATTTAGGGTGTTGGTTACAAAAGCGTCACTATGCTGCAAGCAGCCAGTATTTAACCTTCGGTCTGTCATGATCAGTAACTTGAAATTGTGTTTTCCTGATCCAACACCTACATGCAAGATTTTTTTGAAATGGTTTGATTTGCCTTGTTTTTGTGTCTGTTCTATTCTTTTGCGCACTTGCTCATACATCATATAACCAAACAGGAGGTTATGGAAAGGAGACGGAGCTCATAACATGAGATGC

Protein

Uniprot

Uniprot term	Description
U6A492	Nuclear receptor coactivator 5 OS=Schmidtea mediterranea OX=79327 GN=NCOA5 PE=1 SV=1
Q9HCD5	Nuclear receptor coactivator 5 OS=Homo sapiens OX=9606 GN=NCOA5 PE=1 SV=2
Q91W39	Nuclear receptor coactivator 5 OS=Mus musculus OX=10090 GN=Ncoa5 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR052600	Family	Nuclear receptor coactivator/corepressor	Interproscan
IPR036621	Homologous_superfamily	Anticodon-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23295	NUCLEAR RECEPTOR COACTIVATOR 5-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan