Gene detail

Detailed information of scaffold17.g9.t2 in Aurelia aurita

Genomic Location: scaffold17:75376...99920
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI1 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold17.g9.t2

atcaatttggacgcgaagctgccgagagaaagatctgaaaacatagagtgctcatgtcttgtataatttgagtgaattgagaccgaaaaagaccaagaatcaagcagagtttaacatatttaggtacagctaatatggaaacaacctttgggataggatcagcttcaataaccacagtgacaaaagatggtttgcagaataaatcactgtctgacatgaaaagagaacaggaggtatgcatgagtgattcatcaaataataatgcatgcacatgttcatacaatggcgaccttgaaaaggagtggtttgccgcaactgcaaccagtgaaaaaggaagcccaaataatagttacaagactcatcttagtctaagtggaaaatcaagtagtgcatcaagcagagtcacaatggaaagagctgaaagagagaatgctatggatataaccttgttcgttgaaccggtttcaaagaaactgatctgcatgttatgtggaaatgtcttcaaagaccctatcattgtgtcttgtgggcatacgttctgccgaaattgtgttgctgcaaagacacatgaaacatgtcccactgatggagtcaaactatcagctgtggttgcaaatcttgcggtagacgagcaaattcatgaattatacatgcattgtaaatatggatgcaggccgtctgccagtggaatcccaggagaatacgagtatgatcctgatggatgtccaatggaaattaaaaatggcaacagaaaagagcatgagcacgtttgcgaatatgcaccaatccgttgcccaaacagctcaaggtgtcccaccatgatcaaaatgaatctcgaagatcatttatcaacatgtcaacatctaagatgcccaaattctaaatacaattgcccattcgaaggaacagatgaacagcttgaggcccatttgagagattgcaagtttgaaggattgaaggacttcttacaacatacagaagaacgcatgcagcaaacacttgcgcagcttcaacagaaagatcaggagatcagttttctaaaatcaatgcttgctaaagttacagaaaggatggatcgaatggaaaaagctgtggagataaggatcgatctactagatgagggtcaaactaagttatcatcagatttgttggatgcacggcaaaatcttacccacattgagacggagctttcgagtatggatgcacgagttttcaacattggccaatttgatgtacaaccaactttaaaatgcaaaggaaccttcgttgggcaccagggtccagtttggtgtttgtgtgtttatggctactatcttttcagtggttcttcggacagtacgatcaagttggacggaaagcgattacagccttctgaaaatgcaaaatcgacaggacaacgaagaagatcgacacagaaaacatgcacaaaggtgtgggatacgagatcaaattatatatgtatcaagacattagatgatcactctggaatgatactggcattatgtactcacagaggccggctgttcagtggatctgctgattgcacaataagtgcgtatgacattgatacattggagcttattgaaaattttgctgggggtgaaaatcccatttgtacattggcagctggtcaaaatatgttattcagtggatcattaaaaagtataaaggtttgggaccttcgaactttgaagacgatcaaagaactaactggtttgaatcactgggttcgggcattatgtacaaatgattcttacttgttcagtggatcttaccagacaatacttgtatgggatttgcaatctttagaatgcattcgttccctggaaacatctggaggcagtgtttactccattgcagttacgagacagcatatagcatgtggcacatatgaaaattgtatacatgtatgggatataaacacctacaaacaagtcagcacgttatcaggtcacgtgggaacagtttatgatttgcaagtgatgcagatggtagacacaacaaagataatcagtgcttcatatgatcgatcactcagggtatggagtttggacaacatgaattgcgtacaaactttaatacgtcatcaaggcagtgttacttcattggctgtgtcaagaggaagattgttttctggagctgttgatagcactgttaaggtatggcaatagaaatgctgaaagaagtttgaagtgtctatggataccaaggttgcgagatacctgacggagaaatcagctattgccatctgatttccttccttgaatgacgaaaaccaacaagacgaggtcggtaacagcatagcaatatttcccttcgcctaaaagcctgaccagctgagcgacatctttggtaatagatttgagacttgctgctgagaattcgtttctctgttttaccattacccgaagatttgcctgacagaacttttcatgcaaaaagctcaacagaacaaagttcgacaacatctcccaacaattcatgcttgtcaaacgaaatttgaacacacagtacgtggacgtgagtaccatttcaagtgctttttagcgatgatttctcatttgagaagtatagtacaccctagagatactcgcttctcgtagaagatatatgatatgacacgaaacgagctcagtaggccgttttgtgaaacagataattggaaaggataactttccactatcgtaaataacagaatggttgatccaatacgatgattttttacgagctgacaaaaaagttggtgctgaattttgtgcagagaattccacgctgataaaacatgaatatcttctagcgtattttgatttgtatgatttgtatgcgaagaaagcctcctgattgctgatttgaatgcccttccaattttttggattaatggaattagtttaacattgtgactagctcaagcggagtttaatattgaaataacaacgagcaattttaaccagctttaagaagaccaggtttggacaaagtttaaaatttattaaccaagttagacttgaagtaactagctgttagcgatttttacttgagctactgaaaacgaatggcattttcttattggccaatttcaaatttttcttctcatttttcatcttatcagattttatctaacgatttgctgaaacaataggtagatgattaaatttaaaatctagaaatgcaagaaaagaaattattctttgcagccaaacaaaaaatagtttgtaaactgattttgtcgacaacaatttcaactgtttttatttacagtatggaggtgctagaatttagtccataacctggtttaagctaactggttcaaatcgttggttgtaagagcataggcatcaaatcgttaaaaaagattgcacaattggttatggcatcttccttttgatttaatggcttgaaaggaacttcatttactttcctgttattgctcactggcaatttttgatatcttcattattttcggaattacagcgtttttcttttatggacaaaattcatagacagttttgaaaaaaaatggacaataatcgtaaatcctaaattagtagaggaaacacgatagaatcttcaagaaaacgatggtttatgaaggtctacaatgtggcggtaagcagaattctttcgcttttatggtttatgatttagcaatatcatgacgttacaacacaaaaaactggttgaaacacaaaaaaggctgtaactctgataataatgaatatatcagaaactgccagtgaaaaataatagcgaagtacctgaagttcctttaaagccattaaatcagaaggaagatgcaatagccatttgtgcaatcttttttaaggatttgatgcccatgctggttgtaagtgcactgtaagatgtatataaatttagatattcgtagcaatgacaatttaaaacatctcctaaatattagaataatctatttagaatcatagaatanttatgatggaccacagaatagacttggagcaagtctagcaatatcatgacgttacaacctcgaaactggttgaaacacaaaaaaggctgtaactctgataataatgaatatatcagaaactgccagtgaaaaataatagcgaagtacctgaagttcctttaaagccattaaatcaaaagaaagatgcaatagccatttgtgcaatctttgtttaagatttgatgcccatgctggttgtaagtgcactgtaagatgtatataaatttagatattcgtagcaatgacaatttaaaacatctcctaaatattagaataatctatttagaatcatagaatgtattttgatagctgaatattgctaattttatagcaagtagtatgatgactgtaggaataagaaagacaaataaggtagtcgattgtagtcgatagaatgattgattgattgattgaataattgataatttaattcattgttagatagatagattgatttattgatttataaacttggatcttaaatcttctctcaaaaattttcatagaaagaaacacgaatgtatccaaaattttaagatctagtacccccgaaaaatctcgtaaattacaaggctttatgaggcctttagaaatagagcttcatttccacgatattttcagtggagaaatatacaatctcgtttaagtattttcactattttggttcttttatttccaaattaaaccgttgtcaactatcacgaagaagattggctttctcctgtagatcactgcttgaaatcttattcctaaacagaactgtaaaatctacaattttggttttttttacatagttgacagcaaagttctcgacttcttccacttttaaagcagacctatgctttttctacaactgatcgcctctacctaccccccacccccgttgttaaataagattcattgaaatttgtactatcgaatactatttaatttcctgatattaagtgagtaaatgcccttaatttttatagtatgcagtttgtgttcttatagctgttatattttcgatattacctacatcgtaacatcgacaagctttgtttgtaaataatatagattcttcttttttgattatatgattttgacccccagaaaaacatgtcatgacagttcattcttagc

Transcript

scaffold17.g9.t2

ATCAATTTGGACGCGAAGCTGCCGAGAGAAAGATCTGAAAACATAGAGTGCTCATGTCTTGTATAATTTGAGTGAATTGAGACCGAAAAAGACCAAGAATCAAGCAGAGTTTAACATATTTAGGTACAGCTAATATGGAAACAACCTTTGGGATAGGATCAGCTTCAATAACCACAGTGACAAAAGATGGTTTGCAGAATAAATCACTGTCTGACATGAAAAGAGAACAGGAGGTATGCATGAGTGATTCATCAAATAATAATGCATGCACATGTTCATACAATGGCGACCTTGAAAAGGAGTGGTTTGCCGCAACTGCAACCAGTGAAAAAGGAAGCCCAAATAATAGTTACAAGACTCATCTTAGTCTAAGTGGAAAATCAAGTAGTGCATCAAGCAGAGTCACAATGGAAAGAGCTGAAAGAGAGAATGCTATGGATATAACCTTGTTCGTTGAACCGGTTTCAAAGAAACTGATCTGCATGTTATGTGGAAATGTCTTCAAAGACCCTATCATTGTGTCTTGTGGGCATACGTTCTGCCGAAATTGTGTTGCTGCAAAGACACATGAAACATGTCCCACTGATGGAGTCAAACTATCAGCTGTGGTTGCAAATCTTGCGGTAGACGAGCAAATTCATGAATTATACATGCATTGTAAATATGGATGCAGGCCGTCTGCCAGTGGAATCCCAGGAGAATACGAGTATGATCCTGATGGATGTCCAATGGAAATTAAAAATGGCAACAGAAAAGAGCATGAGCACGTTTGCGAATATGCACCAATCCGTTGCCCAAACAGCTCAAGGTGTCCCACCATGATCAAAATGAATCTCGAAGATCATTTATCAACATGTCAACATCTAAGATGCCCAAATTCTAAATACAATTGCCCATTCGAAGGAACAGATGAACAGCTTGAGGCCCATTTGAGAGATTGCAAGTTTGAAGGATTGAAGGACTTCTTACAACATACAGAAGAACGCATGCAGCAAACACTTGCGCAGCTTCAACAGAAAGATCAGGAGATCAGTTTTCTAAAATCAATGCTTGCTAAAGTTACAGAAAGGATGGATCGAATGGAAAAAGCTGTGGAGATAAGGATCGATCTACTAGATGAGGGTCAAACTAAGTTATCATCAGATTTGTTGGATGCACGGCAAAATCTTACCCACATTGAGACGGAGCTTTCGAGTATGGATGCACGAGTTTTCAACATTGGCCAATTTGATGTACAACCAACTTTAAAATGCAAAGGAACCTTCGTTGGGCACCAGGGTCCAGTTTGGTGTTTGTGTGTTTATGGCTACTATCTTTTCAGTGGTTCTTCGGACAGTACGATCAAGttggacggaaagcgattacagccttctgaaaatgcaaaatcgacaggacaacgaagaagatcgacacagaaaacatgcacaaagGTGTGGGATACGAGATCAAATTATATATGTATCAAGACATTAGATGATCACTCTGGAATGATACTGGCATTATGTACTCACAGAGGCCGGCTGTTCAGTGGATCTGCTGATTGCACAATAAGTGCGTATGACATTGATACATTGGAGCTTATTGAAAATTTTGCTGGGGGTGAAAATCCCATTTGTACATTGGCAGCTGGTCAAAATATGTTATTCAGTGGATCAttaaaaagtataaagGTTTGGGACCTTCGAACTTTGAAGACGATCAAAGAACTAACTGGTTTGAATCACTGGGTTCGGGCATTATGTACAAATGATTCTTACTTGTTCAGTGGATCTTACCAGACAATACTTGTATGGGATTTGCAATCTTTAGAATGCATTCGTTCCCTGGAAACATCTGGAGGCAGTGTTTACTCCATTGCAGTTACGAGACAGCATATAGCATGTGGCACATATGAAAATTGTATACATGTATGGGATATAAACACCTACAAACAAGTCAGCACGTTATCAGGTCACGTGGGAACAGTTTATGATTTGCAAGTGATGCAGATGGTAGACACAACAAAGATAATCAGTGCTTCATATGATCGATCACTCAGGGTATGGAGTTTGGACAACATGAATTGCGTACAAACTTTAATACGTCATCAAGGCAGTGTTACTTCATTGGCTGTGTCAAGAGGAAGATTGTTTTCTGGAGCTGTTGATAGCACTGTTAAGGTATGGCAATAGAAATGCTGAAAGAAGTTTGAAGTGTCTATGGATACCAAGGTTGCGAGATACCTGACGGAGAAATCAGCTATTGCCATCTGATTTCCTTCCTTGAATGACGAAAACCAACAAGACGAGGTCGGTAACAGCATAGCAATATTTCCCTTCGCCTAAAAGCCTGACCAGCTGAGCGACATCTTTGGTAATAGATTTGAGACTTGCTGCTGAGAATTCGTTTCTCTGTTTTACCATTACCCGAAGATTTGCCTGACAGAACTTTTCATGCAAAAAGCTCAACAGAACAAAGTTCGACAACATCTCCCAACAATTCATGCTTGTCAAACGAAATTTGAACACACAGTACGTGGACGTGAGTACCATTTCAAGTGCTTTTTAGCGATGATTTCTCATTTGAGAAGTATAGTACACCCTAGAGATACTCGCTTCTCGTAGAAGATATATGATATGACACGAAACGAGCTCAGTAGGCCGTTTTGTGAAACAGATAATTGGAAAGGATAACTTTCCACTATCGTAAATAACAGAATGGTTGATCCAATACGATGATTTTTTACGAGCTGACAAAAAAGTTGGTGCTGAATTTTGTGCAGAGAATTCCACGCTGATAAAACATGAATATCTTCTAGCGTATTTTGATTTGTATGATTTGTATGCGAAGAAAGCCTCCTGATTGCTGATTTGAATGCCCTTCCAATTTTTTGGATTAATGGAATTAGTTTAACATTGTGACTAGCTCAAGCGGAGTTTAATATTGAAATAACAACGAGCAATTTTAACCAGCTTTAAGAAGACCAGGTTTGGACAAAGTTTAAAATTTATTAACCAAGTTAGACTTGAAGTAACTAGCTGTTAGCGATTTTTACTTGAGCTACTGAAAACGAATGGCATTTTCTTATTGGCCAATTTCAAATTTTTCTTCTCATTTTTCATCTTATCAGATTTTATCTAACGATTTGCTGAAACAATAGGTAGATGATTAAATTTAAAATCTAGAAATGCAAGAAAAGAAATTATTCTTTGCAGCCAAACAAAAAATAGTTTGTAAACTGATTTTGTCGACAACAATTTCAACTGTTTTTATTTACAGTATGGAGGTGCTAGAATTTAGTCCATAACCTGGTTTAAGCTAACTGGTTCAAATCGTTGGTTGTAAGagcataggcatcaaatcgttaaaaaagattgcacaattggttatggcatcttccttttgatttaatggcttgaaaggaacttcatttactttcctgttattgctcactggcaatttttgatatcttcattattttcggaattacagcgtttttcttttatggacaaaattcatagacagttttgaaaaaaaatggacaataatcgtaaatcctaaattagtagaggaaacacgatagaatcttcaagaaaacgatggtttatgaaggtctacaatgtggcggtaagcagaattctttcgcttttatggtttatgatttagcaatatcatgacgttacaacacaaaaaactggttgaaacacaaaaaaggctgtaactctgataataatgaatatatcagaaactgccagtgaaaaataatagcgaagtacctgaagttcctttaaagccattaaatcagaaggaagatgcaatagccatttgtgcaatcttttttaaggatttgatgcccatgctgGTTGTAAGTGCACTGTAAGATGTATATAAATTTAGATATTCGTAGCAATGACAATTTAAAACATCTCCTAAATATTAGAATAATCTATTTAGAATCATAGAATanttatgatggaCCACAGAATAGACTTGGAGCAAGtctagcaatatcatgacgttacaacctcgaaactggttgaaacacaaaaaaggctgtaactctgataataatgaatatatcagaaactgccagtgaaaaataatagcgaagtacctgaagttcctttaaagccattaaatcaaaagaaagatgcaatagccatttgtgcaatctttgtttaagatttgatgcccatgctGGTTGTAAGTGCACTGTAAGATGTATATAAATTTAGATATTCGTAGCAATGACAATTTAAAACATCTCCTAAATATTAGAATAATCTATTTAGAATCATAGAATGTATTTTGATAGCTGAATATTGCTAATTTTATAGCAAGTAGTATGATGACTGTAGGAATAAGAAAGACAAATAAGGTAGTCgattgtagtcgatagaatgattgattgattgattgaataattgataatttaattcattgttagatagatagattgatttattgatttatAAACTTGGATCTTAAATCTTCTCTCAAAAATTTTCATAGAAAGAAACACGAATGTATCCAAAATTTTAAGATCTAGTACCCCCGAAAAATCTCGTAAATTACAAGGCTTTATGAGGCCTTTAGAAATAGAGCTTCATTTCCACGATATTTTCAGTGGAGAAATATACAATCTCGTTTAAGTATTTTCACTATTTTGGTTCTTTTATTTCCAAATTAAACCGTTGTCAACTATCACGAAGAAGATTGGCTTTCTCCTGTAGATCACTGCTTGAAATCTTATTCCTAAACAGAACTGTAAAATCTACAATTTTGGTTTTTTTTACATAGTTGACAGCAAAGTTCTCGACTTCTTCCACTTTTAAAGCAGACCTATGCTTTTTCTACAACTGATCGCCTCTACCTACCCCCCACCCCCGTTGTTAAATAAGATTCATTGAAATTTGTACTATCGAATACTATTTAATTTCCTGATATTAAGTGAGTAAATGCCCTTAATTTTTATAGTATGCAGTTTGTGTTCTTATAGCTGTTATATTTTCGATATTACCTACATCGTAACATCGACAAGCTTTGTTTGTAAATAATATAGATTCTTCTTTTTTGATTATATGATTTTGACCCCCAGAAAAACATGTCATGACAGTTCATTCTTAGC

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity RING\|U-box · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF13445 all species →	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001293 all species →	Domain	Zinc finger, TRAF-type	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR027370 all species →	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19848 all species →	WD40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10646	TRAF7, RFWD1; E3 ubiquitin-protein ligase TRAF7	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.