Gene detail

Detailed information of scaffold170.g27.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold170:299187...316644
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold170.g27.t2

cagtatgaatttagcgtctattactttgcgtgctctgtagcatttgtgcaacataaatttgaagtaatgcatttttccattaagcttacgaattaatgcataccttgccccttgaaatggataatacatcgtacccctttcgattcttcttgggaacaacccttgtaggtcttccatcttatttactccccatgctcgctgtagctgtccgtacggcacatgagagaaccgctgcaagtaatgtccactgcaccgctgagcgaaacgtgttttgccgaacttcatgacgggcggttgctcgctaagagctgccatacaccaaagccatcccggaatggtagagagccttttcttttcgaagtagcggccataaacatatgcacccataacaagccttgatttgtagagcagtttgtgtatttcgtaatatgtctcaaatgggcctttcgtcggtagatgtacatcaaagtcttctgcacacaatcttttccacgttgagtgacaatggtagcaaatcacgttcaatctcttgcaagttctggcaactctcagcaagtctttagtattgcaataagataacactttcatgacaacttcagtacaaagccccggtaaactgtcaggtttgaaatttgccatcgccttgatctccttcagttgccctcttgtatacattgtttcacttcgtgtacttttcaaaatctttcgattgcgctgccgacaaaactttgcatttcgctctgaagaacgtctgcagacggcgcgaggcatgtcgatgaatgaaatcaaacgtcatcttctgatgttataacgaaactttcccgttttgtttgctggcgtagagatttttgatattttcaatcttgagttgaaactgtaataatctacgatccttattcaactttatgaatggaatttgacgtcagatttgaacaaattattacgctaaaaatggttgcgaaaaaaattatgaagatgtgctgcgtttctccacaaaagagtctggattgagctatattttgatgcatttttatacgaaatgttcgattgagcgctgttagaactatcactgttgtgcacattcgaaaattcctcaaatttcctcgaatgatatgaatttcaagaaactttctgtaccaggtcaaaatctatagttcaaaattcgaaggtcacagtatgtgaactgcaaaatggctattggtggagagatgggaaatgcatgctgatttgaacacccattttgtgatccttgcaagtaatcgagactcaaaagctgctttgcggatcgaaatcactccttttatgccaaaaccccaaccgagtaggctgcaagatctggggatttgcaacagtctatttgtgtgttggtggagagaaaccagaactgaagtacgatcaaggatttgtattgagtctgccctgtctttcgtgacaagctaattcaaaacagaatttttatcagaaataacagcaatatggagatctactggaactggatattgtgaactttttgttttgtgtagtgaacgatttgcgtcgtaccgttatctcagtgtgctgtctaagctgttaggacagtggcagagagagctgtatttttagaaggtgtcagcttgcttattgacaagaacttattcacaagcaacatggagacaactttatttcgagtgtgttctaaattggtcacgatttgtgccatttttgtcctttgctgttcgcatcgaattcatggtatgaagaaatgcaaggaaataacattaccagcccatgggattgcgttgaaaaaccgcgctatggctctgtacaatacagccgaattcgcctgtaggcatggttaccgcctggttgggtcaagatggcgtgtttgtactcagagtggaaaatggactggcttaccagctaaatgtgaagatatcgacgaatgtgctgcacaggggcaatattacccatgtcaccaaaatgctgattgcatcaatacgattggctcatatcattgtgtatgtttacctggtttccatggcaatggagtcgaatgcaaaagatcagaatacaatcttttgagaccatcttcagatacatgtggaattgtcgtacttaaaaacaatacaataaattcaaggaagaggttccggagagtggttggagggaaagtagcttatccaggagaatggccatggcaagcatcgatcgaaatcaagaaaaaaggcgaacacgacaagtccaagcatgaacgccaagagcaacgatttgaagtaaagaatatctttattcatccgaaatttgacagagaaaaggtttcatatgatatcgctttgctcaagttgaaaaagaaggagaaaaggacagcgtatgtgaacctgatatgtcttgtcggcgggagaagagcacgtgtatttgaagaccaagaacacttagcaactgtgacaggctgggggacaacatctgaagtagatattggacaagaccctggcctcttttccagacacctacgtgaggctactattccactgagaaacacacgaacttgcaaaaaagcaacggcctacaactttcattcaagatcaatgctgtgtgctggcttcattgatggatccgtatcgccatgttttggggatcatggtgcccccttgatgattcaggacccttactcaaatcgttgggtgttaattggactatacagctggagtgagggttgtgggaaaagggaaaagttcagctactatacacgtgtttcaaaatttcgaaaatggattacaagtttgataaggcattctccttgaacgacacagtgtgataagaactttatagttatactcgtattttgtcaataagaaagtttgtcaacacgaagtcttgtcaataaggaagtttgtaacttatgtacgacatgtgtgacgtatttgtgctatcaagtggcagtcttgaaggagaaaaatttgtgagaccgtccgttcaatcatgtaaggaaccaagagcttaaaaaatggttgtacccccgttgtaccttttgggaaattatagaaaccaacatatgtccacaatttattcatctgaaatgttttcgtttaatatatacgatcgtttaatttgctactaaattctgtctcccattagatatcagttgtgatttgcaataacgcaaaattgctcacccaggactctttgattattcttattcgcggatattttcgcttgacagtcattgtaagccgctttnnnn

Transcript

scaffold170.g27.t2

CAGTATGAATTTAGCGTCTATTACTTTGCGTGCTCTGTAGCATTTGTGCAACATAAATTTGAAGTAATGCATTTTTCCATTAAGCTTACGAATTAATGCATACCTTGCCCCTTGAAATGGATAATACATCGTACCCCTTTCGATTCTTCTTGGGAACAACCCTTGTAGGTCTTCCATCTTATTTACTCCCCATGCTCGCTGTAGCTGTCCGTACGGCACATGAGAGAACCGCTGCAAGTAATGTCCACTGCACCGCTGAGCGAAACGTGTTTTGCCGAACTTCATGACGGGCGGTTGCTCGCTAAGAGCTGCCATACACCAAAGCCATCCCGGAATGGTAGAGAGCCTTTTCTTTTCGAAGTAGCGGCCATAAACATATGCACCCATAACAAGCCTTGATTTGTAGAGCAGTTTGTGTATTTCGTAATATGTCTCAAATGGGCCTTTCGTCGGTAGATGTACATCAAAGTCTTCTGCACACAATCTTTTCCACGTTGAGTGACAATGGTAGCAAATCACGTTCAATCTCTTGCAAGTTCTGGCAACTCTCAGCAAGTCTTTAGTATTGCAATAAGATAACACTTTCATGACAACTTCAGTACAAAGCCCCGGTAAACTGTCAGGTTTGAAATTTGCCATCGCCTTGATCTCCTTCAGTTGCCCTCTTGTATACATTGTTTCACTTCGTGTACTTTTCAAAATCTTTCGATTGCGCTGCCGACAAAACTTTGCATTTCGCTCTGAAGAACGTCTGCAGACGGCGCGAGGCATGTCGATGAATGAAATCAAACGTCATCTTCTGATGTTATAACGAAACTTTCCCGTTTTGTTTGCTGGCGTAGAGATTTTTGATATTTTCAATCTTGAGTTGAAACTGTAATAATCTACGATCCTTATTCAACTTTATGAATGGAATTTGACGTCAGATTTGAACAAATTATTACGCTAAAAATGGTTGCGAAAAAAATTATGAAGATGTGCTGCGTTTCtccacaaaagagtctggattgagctatattttgatgcatttttatacgaaatgttcgattgagcgctgttagaactatcactgttgtgcacattcgaaaattcctcaaaTTTCCTCGAATGATATGAATTTCAAGAAACTTTCTGTACCAGGTCAAAATCTATAGTTCAAAATTCGAAGGTCACAGTATGTGAACTGCAAAATGGCTATTGGTGGAGAGATGGGAAATGCATGCTGATTTGAACACCCATTTTGTGATCCTTGCAAGTAATCGAGACTCAAAAGCTGCTTTGCGGATCGAAATCACTCCTTTTATGCCAAAACCCCAACCGAGTAGGCTGCAAGATCTGGGGATTTGCAACAGTCTATTTGTGTGTTGGTGGAGAGAAACCAGAACTGAAGTACGATCAAGGATTTGTATTGAGTCTGCCCTGTCTTTCGTGACAAGCTAATTCAAAACAGAATTTTTATCAGAAATAACAGCAATATGGAGATCTACTGGAACTGGATATTGTGAACTTTTTGTTTTGTGTAGTGAACGATTTGCGTCGTACCGTTATCTCAGTGTGCTGTCTAAGCTGTTAGGACAGTGGCAGAGAGAGCTGTATTTTTAGAAGGTGTCAGCTTGCTTATTGACAAGAACTTATTCACAAGCAACATGGAGACAACTTTATTTCGAGTGTGTTCTAAATTGGTCACGATTTGTGCCATTTTTGTCCTTTGCTGTTCGCATCGAATTCATGGTATGAAGAAATGCAAGGAAATAACATTACCAGCCCATGGGATTGCGTTGAAAAACCGCGCTATGGCTCTGTACAATACAGCCGAATTCGCCTGTAGGCATGGTTACCGCCTGGTTGGGTCAAGATGGCGTGTTTGTACTCAGAGTGGAAAATGGACTGGCTTACCAGCTAAATGTGAAGATATCGACGAATGTGCTGCACAGGGGCAATATTACCCATGTCACCAAAATGCTGATTGCATCAATACGATTGGCTCATATCATTGTGTATGTTTACCTGGTTTCCATGGCAATGGAGTCGAATGCAAAAGATCAGAATACAATCTTTTGAGACCATCTTCAGATACATGTGGAATTGTCGTACTTAAAAACAATACAATAAATTCAAGGAAGAGGTTCCGGAGAGTGGTTGGAGGGAAAGTAGCTTATCCAGGAGAATGGCCATGGCAAGCATCGATCGAAATCAAGAAAAAAGGCGAACACGACAAGTCCAAGCATGAACGCCAAGAGCAACGATTTGAAGTAAAGAATATCTTTATTCATCCGAAATTTGACAGAGAAAAGGTTTCATATGATATCGCTTTGCTCAAGTTGAAAAAGAAGGAGAAAAGGACAGCGTATGTGAACCTGATATGTCTTGTCGGCGGGAGAAGAGCACGTGTATTTGAAGACCAAGAACACTTAGCAACTGTGACAGGCTGGGGGACAACATCTGAAGTAGATATTGGACAAGACCCTGGCCTCTTTTCCAGACACCTACGTGAGGCTACTATTCCACTGAGAAACACACGAACTTGCAAAAAAGCAACGGCCTACAACTTTCATTCAAGATCAATGCTGTGTGCTGGCTTCATTGATGGATCCGTATCGCCATGTTTTGGGGATCATGGTGCCCCCTTGATGATTCAGGACCCTTACTCAAATCGTTGGGTGTTAATTGGACTATACAGCTGGAGTGAGGGTTGTGGGAAAAGGGAAAAGTTCAGCTACTATACACGTGTTTCAAAATTTCGAAAATGGATTACAAGTTTGATAAGGCATTCTCCTTGAACGACACAGTGTGATAAGAACTTTATAGTTATACTCGTATTTTGTCAATAAGAAAGTTTGTCAACACGAAGTCTTGTCAATAAGGAAGTTTGTAACTTATGTACGACATGTGTGACGTATTTGTGCTATCAAGTGGCAGTCTTGAAGGAGAAAAATTTGTGAGACCGTCCGTTCAATCATGTAAGGAACCAAGAGCTTAAAAAATGGTTGTACCCCCGTTGTACCTTTTGGGAAATTATAGAAACCAACATATGTCCACAATTTATTCATCTGAAATGTTTTCGTTTAATATATACGATCGTTTAATTTGCTACTAAATTCTGTCTCCCATTAGATATCAGTTGTGATTTGCAATAACGCAAAATTGCTCACCCAGGACTCTTTGATTATTCTTATTCGCGGATATTTTCGCTTGACAGTCATTGTAAGCCGCTTTNNNN

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00084 all species →	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan
PF00089 all species →	Trypsin	Trypsin	Domain	Interproscan
PF12947 all species →	EGF_3	EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR009003 all species →	Homologous_superfamily	Peptidase S1, PA clan	Interproscan
IPR035976 all species →	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR001254 all species →	Domain	Serine proteases, trypsin domain	Interproscan
IPR043504 all species →	Homologous_superfamily	Peptidase S1, PA clan, chymotrypsin-like fold	Interproscan
IPR000436 all species →	Domain	Sushi/SCR/CCP domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR024731 all species →	Domain	EGF domain	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24253 all species →	TRANSMEMBRANE PROTEASE SERINE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01344	PROC; protein C (activated)	EC:3.4.21.69	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.