Gene detail

Detailed information of scaffold1790.g4.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold1790:17438...46004
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold1790.g4.t2

ctaatgcactttgtttggtgacctggacgccttagcaaacaagtcagtttggaatggcttaaaagtcaacttaaagcatcaacaaagccgcttttccactctcactgataacaacgctatttatttccaagtttaaacatggcaagttgatgtgtgccgattgcattattatgaagcaaagacaacaatgagcagttgaacgtgaaaggaattgcgagagaagcccaaagtgaagcaagatggacaaatcatggggaggaaaatcgagcacgataaagagggcagttaaacatattcgaatcgaaggagatgacgagattgatgatgtgtttcattttggtgccacacttggtcagggctgctttggggtggttatcgaagctgttaatagagcgaccaatgctaagtttgctgttaaactgatcaataaagaaaaggctggaagtgcaggcgttaagttattagaaagggaagttagtattatgaagaaagtcttccacaaacatatcgtacatttagaagaagtttatgaaacttccaagaaaatgtttttagtcatggaattatgtgacaaaggtggcttggatgaacttctaaagaagagggttcgctttagcgaagaggaaactctttgtgttatgaagcaacttatcagtgccgttgtatatttacatgaaaacacgactgcagacaaaggaaattctatcaaccagaaattcaaaacaaacaaggccgcaaaagttgccctgaaactagtagggcaaactctcgccttgtgcaagcgaaaggctggaagtgcaggcgttaagttattagaaagggaagttagtattatgaagaaagtcttccacaaacatatcgtacatttagaagaagtttatgaaacttccaagaaaatgtttttagtcatggaattatgtgacaaaggtggcttggatgaacttctaaagaagagggttcgcttttgcgaagaggaaactctttgtgttatgaagcaacttatcagtgccgttgtatatttacatgaaaacacgcctgaagtgataacaaatcttggatacagtgaaagatgtgatgtgtggagttgtggagtaattatgtattatttattgaatggagcccctccttttgtagccaacactgaagaagaactccacaatttgatcaaaagtggtgaagtaaaatactcggaatctcattgggatccggttagtatcacagctaaacagttgattgagtggatgatgaaaattgatcctgctcgacgatgcagtgcaaaagaagtgttacatgacccatggatattgggaataacgaactcgactaatggaccaaggctaaatgttttggatttaatgggtgaagaattgattaggcaaaaacttgaacgatcccaaagcaatagtgacaaagatgccaatgagaatatatctgtcttttcgagtggggaaaaaactccctcaaacgagcccacgaggagttcatcgaacctcactgccagtcctaaaccgggaaaaccaagggaaaagagacttacttcaaggtccgactcgaaattatcgacgaaatcactggaacggcgatcaccaccagcaaatgacaagaagtcatattcaccagctcggtcgatcgacaggaaatcggattcattctcaaaggaaagaaaaagtgagttaaattcaagtggaaacagtacaaaaagtgtcccaagttacatgcaaccaacaaagagttcatcagcaccaaagcacccaaatacgaaagacaaacggaccaaaagataatcttgagtaatatttctaacccgaggtaatttcgtagaaattcattttagaattgtgataagcttcagtctgcgagcactctcctctgctgagactcattttaataatgtttgggactgtccttcttaaatacgattcgagtgttctctgcatcgaaatcagtctttttatccaggcttcgttagaaaattttccagaaactcccccgccatctgtacgtagtatagtttttgtagaggagactgctcaatgaacatcacagcaattattactttgtactttatcattgcacgtggatgttcaaactcgtaaagaaacattgttacccaggatcctttgcgggcgcgctgcaatttcagacggtctgaaaatcagatttgacctcagcggaaaacatgaatccatactgaagtatttgaactgacagaaaagtttgactttcttgacttctctaccatacgattcaacaactgcatcctggataaatattattcactcaggccaaatatgattgccaggccgtctcaaattgcagggtgcccgcaaagagccccaggtaacagttgctctttatgactgacgatgccttttttgcggagaagggggggatgttgcatcacaacgccattgaattttttcaatatttgttacagtattaccccgccactaagaaactgacttataagaaactgcagtctgtcagatggcaccatagtcattgtccaacatttggtttgatataacatttatgtaatatttataagaaaccaagcagcctggttttacaaaatgaatttcttagtagcggggtaatactgtacttcatttccagaaaattcgtgtttgtaaatttctttcaaattatatatttgaagtttcacaaggaaatagtgttgttaatttaggaaattgagcactatcactcttataagcggtagctcgaattgatcaatgagaagtgaggggattttcataaatttggtcatcctttctttaaagtaaagaaatggaaaagttcctgaggactacaaacaaatttatcgttgcaaagaatgtaaaagaacgaactaattgcccgacaacaagagcagattttgtaatacaatagcaacagttgcgtttgattgacacctcaattcaaagcgattagcggctgcagacaaaggaaattctctcaaccagtaattcaaaacaaacaaagccgcaaaag

Transcript

scaffold1790.g4.t2

CTAATGCACTTTGTTTGGTGACCTGGACGCCTTAGCAAACAAGTCAGTTTGGAATGGCTTAAAAGTCAACTTAAAGCATCAACAAAGCCGCTTTTCCACTCTCACTGATAACAACGCTATTTATTTCCAAGTTTAAACATGGCAAGTTGATGTGTGCCGATTGCATTATTATGAAGCAAAGACAACAATGAGCAGTTGAACGTGAAAGGAATTGCGAGAGAAGCCCAAAGTGAAGCAAGATGGACAAATCATGGGGAGGAAAATCGAGCACGATAAAGAGGGCAGTTAAACATATTCGAATCGAAGGAGATGACGAGATTGATGATGTGTTTCATTTTGGTGCCACACTTGGTCAGGGCTGCTTTGGGGTGGTTATCGAAGCTGTTAATAGAGCGACCAATGCTAAGTTTGCTGTTAAACTGATCAATAAAGAAAAGGCTGGAAGTGCAGGCGTTAAGTTATTAGAAAGGGAAGTTAGTATTATGAAGAAAGTCTTCCACAAACATATCGTACATTTAGAAGAAGTTTATGAAACTTCCAAGAAAATGTTTTTAGTCATGGAATTATGTGACAAAGGTGGCTTGGATGAACTTCTAAAGAAGAGGGTTCGCTTTAGCGAAGAGGAAACTCTTTGTGTTATGAAGCAACTTATCAGTGCCGTTGTATATTTACATGAAAACAcgactgcagacaaaggaaattctatcaaccagaaattcaaaacaaacaaggccgcaaaagttgccctgaaactagtagggcaaactctcgccttgtgcaagcgaaagGCTGGAAGTGCAGGCGTTAAGTTATTAGAAAGGGAAGTTAGTATTATGAAGAAAGTCTTCCACAAACATATCGTACATTTAGAAGAAGTTTATGAAACTTCCAAGAAAATGTTTTTAGTCATGGAATTATGTGACAAAGGTGGCTTGGATGAACTTCTAAAGAAGAGGGTTCGCTTTTGCGAAGAGGAAACTCTTTGTGTTATGAAGCAACTTATCAGTGCCGTTGTATATTTACATGAAAACACGCCTGAAGTGATAACAAATCTTGGATACAGTGAAAGATGTGATGTGTGGAGTTGTGGAGTAATTATGTATTATTTATTGAATGGAGCCCCTCCTTTTGTAGCCAACACTGAAGAAGAACTCCACAATTTGATCAAAAGTGGTGAAGTAAAATACTCGGAATCTCATTGGGATCCGGTTAGTATCACAGCTAAACAGTTGATTGAGTGGATGATGAAAATTGATCCTGCTCGACGATGCAGTGCAAAAGAAGTGTTACATGACCCATGGATATTGGGAATAACGAACTCGACTAATGGACCAAGGCTAAATGTTTTGGATTTAATGGGTGAAGAATTGATTAGGCAAAAACTTGAACGATCCCAAAGCAATAGTGACAAAGATGCCAATGAGAATATATCTGTCTTTTCGAGTGGGGAAAAAACTCCCTCAAACGAGCCCACGAGGAGTTCATCGAACCTCACTGCCAGTCCTAAACCGGGAAAACCAAGGGAAAAGAGACTTACTTCAAGGTCCGACTCGAAATTATCGACGAAATCACTGGAACGGCGATCACCACCAGCAAATGACAAGAAGTCATATTCACCAGCTCGGTCGATCGACAGGAAATCGGATTCATTCTCAAAGGAAAGAAAAAGTGAGTTAAATTCAAGTGGAAACAGTACAAAAAGTGTCCCAAGTTACATGCAACCAACAAAGAGTTCATCAGCACCAAAGCACCCAAATACGAAAGACAAACGGACCAAAAGATAATCTTGAGTAATATTTCTAACCCGAGGTAATTTCGTAGAAATTCATTTTAGAATTGTGATAAGCTTCAGTCTGCGAGCACTCTCCTCTGCTGAGACTCATTTTAATAATGTTTGGGACTGTCCTTCTTAAATACGATTCGAGTGTTCTCTGCATCGAAATCAGTCTTTTTATCCAGGCTTCGTTAGAAAATTTTCCAGAAACTCCCCCGCCATCTGTACGTAGTATAGTTTTTGTAGAGGAGACTGCTCAATGAACATCACAGCAATTATTACTTTGTACTTTATCATTGCACGTGGATGTTCAAACTCGtaaagaaacattgttacccaggatcctttgcgggcgcgctgcaatttcagacggtctgaaaatcagatttgacctcagcggaaaacatgaatccatactgaagtatttgaactgacagaaaagtttGACTTTCTTGacttctctaccatacgattcaacaactgcatcctggataaatattattcactcaggccaaatatgattgccaggccgtctcaaattgcagggtgcccgcaaagagccccaggtaacagttgctctttaTGACTGACGATGCCTTTTTTGCGGAGAAGGGGGGGATGTTGCATCACAACGCCATTGAATTTTTTCAATATTTGTtacagtattaccccgccactaagaaactgacttataagaaactgcagtctgtcagatggcaccatagtcattgtccaacatttggtttgatataacatttatgtaatatttataagaaaccaagcagcctggttttacaaaatgaatttcttagtagcggggtaatactgtaCTTCATTTCCAGAAAATTCGTGTTTGTAAATTTCTTTCAAATTATATATTTGAAGTTTCACAAGGAAATAGTGTTGTTAATTTAGGAAATTGAGCACTATCACTCTTATAAGCGGTAGCTCGAATTGATCAATGAGAAGTGAGGGGATTTTCATAAATTTGGTCATCCTTTCTTTAAAGTAAAGAAATGGAAAAGTTCCTGAGGACTACAAACAAATTTATCGTTGCAAAGAATGTAAAAGAACGAACTAATTGCCCGACaacaagagcagattttgtaatacaatagcaacagttgcgtttgattgacacctcaattcaaagcgattagcggctgcagacaaaggaaattctctcaaccagtaattcaaaacaaacaaagccgcaaaag

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24347 all species →	SERINE/THREONINE-PROTEIN KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08813	STK33; serine/threonine kinase 33	EC:2.7.11.1	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.