Gene detail

Detailed information of scaffold186.g2.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold186:51409...60724
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold186.g2.t1

gctgttgttgtggttggttctttctgcagaagaaaaaggtgcggaaagaagtggatttgtctcactcaaaagaaccaagaataaatttaccatgaaatcatgacactacttccagccacgcagtaagattacagcttgcatcaaaaagatcattgcaaagtcacagtcacagaatccaagaagaataacagaaggacaaagagatggctgggaaaccaattttgacatcaagggagttgaagaacaaagttactgggattgatttgatggttccagattatgaagaaaaggctggaagaatatccaaaacagccacatttaatgttattgtcattaccagattgttttattataaaactccaagacataaagaatctgatgtggtgcaattcttgataagcaaaagatttgaagaatttgaagacctctaccaaaagctaaatgcgagattcccaagtgtattattccctgcactaccagcgaaaagcatgatagtgaataccagtgttcttcttgcgaggaaaaaatttgcagatgagctcatgcatctggttgctagaacacaaaagctttgctgcagtccaatgatccttgaattcttgggggttagaaagccatcaaaatcaacacagcaaacaattgtcgtgagtgaagatatctatgaagaaaagaaaacagaggaggttgaaagcacacctgagcagactctatcatccgagatcgaacaatcagcacaaaatgaagcaaggaagcaagaagaggaacatcaagatttatttgtcccagttgatttagacacatcaaatgtttctgacatatcagggcaggatgatatctttaatccttcaaattcaaaaaagcttcagttgcatgcttcgttgtttgaagatgaattagaaaaaccggaccagaaggatgaaacagatctgtttatgccggctgatgcaaaggttgaagtgcaacgaaaagtcgctttggaggaggatgaagatacagatgatttattaaatgtggaggagagtatggatgacctactcgctctaagtaaaaagtcagaaagaaaacaatcaatcaaagcggcaacaacaacatctcgaccatcagtgaaaccgaaaccccaaacaagaacatcatttgaagcgaaccctgaagatgacgatttctcgctactggctgctgcttcgaaaacaagcacatcagttgaagaaaaggctgaaaaggatttctttgcagaagcaagaaccaaaaccagaggagcatcattgagagacaagaggcaacagctaagcaaagaagatacactcgatgacatttttggcaagggaaaagactcgaggaacatttttggcaagcataatgacgatgacttatttactactccagccgcagcgaccgttgatgaggcctctgcgttggaggaggatgatattatgaaatacattaatgataatctggatcaagatgttgctaatctggatttatgagattcacaagattatggtatgtttgctctaatctaatcatctttaattttggtagattaatcatcacctcaatcccagtggtaccgtggaatataagcttcttttcagtgctctacatagctctcatgtaaaccattcataaaaacaggcctggtcaataaattattaaagttcacctaaaaatcttgatacatagaggcaaatctgaaaatgcaagtaggtaggtagaaaaggcaaaagaaatttgggattgtctgctgtaagtaactgtcattgaagaggtttggataatatattcgagattttattttcatttccaatgaacttttttcgtactctatgcatgggtactgtgaacacgagttgtgtcgatcgtgtccacaatacctggcctaaatgttactaaatgaataaatgtagtttgttaccttgcttgtcttcatttcatgagtatctctgctcttttgtttcggcagccactcttgcttactttcaacgacataaggtttgaacagtgccgcgctctgaaagtcatcgcctgacaactgtcgctcaggtgataacttccagagagcggcattgttcaaaccttaggccgttaaaagtaagcaagaatggctgccgaagcaaaagagcagagatactcatgaaatgaagacaagcaaggtaacgagctacgtttattcatttagtaacatttaggtcaggtaacaatacccatgctctatgaagcctcgaaaatttacttgaactgtctgttacagaaaatgtgctctgtgcaagtacgacaaattgcaaccacaaaaacaagtcatagcttgttcttgacgaaagtttttcgcatcgatttcattagttttgtagaaatatttttaagagagtaaatactttttctgatttttcgttatgaaagatcttttcatctgtagctgtttaaaaggcagtgtttgccgagatactgtaggtttctttttgatggcttcaagaacatttaggggacctttaattagtgtgtaagaaaatttctacatgacacacgataagtcagtacgctgattcgccacccgttgtcttttttgtctggtaattttgtaagattcctttaatctgtttttcttgaggtctgcaaattcatatcttttagaagctgtatcaaaatttctaataaattgaataaattttgtttgattggaagttaaagtatctgtgagacgaaaagttgtggtttttgaattattatcattattattatcattattattatcactattattattgttattagtattcttacaattatgaaatatggggttgaattcataactgattctaatttcatatcaagatggtaactttggtagttttgttttgtagtattaaggcactttaaatgacaaagaaattatctggtttctattcatggaaagtattttgtatttgcccctcttgtgtgctcgtactgttagatctggtcggaaaagattcagagttttcatctcagagcagtgattatgatgttaatagaagaacctagtggat

Transcript

scaffold186.g2.t1

GCTGTTGTTGTGGTTGGTTCTTTCTGCAGAAGAAAAAGGTGCGGAAAGAAGTGGATTTGTCTCACTCAAAAGAACCAAGAATAAATTTACCATGAAATCATGACACTACTTCCAGCCACGCAGTAAGATTACAGCTTGCATCAAAAAGATCATTGCAAAGTCACAGTCACAGAATCCAAGAAGAATAACAGAAGGACAAAGAGATGGCTGGGAAACCAATTTTGACATCAAGGGAGTTGAAGAACAAAGTTACTGGGATTGATTTGATGGTTCCAGATTATGAAGAAAAGGCTGGAAGAATATCCAAAACAGCCACATTTAATGTTATTGTCATTACCAGATTGTTTTATTATAAAACTCCAAGACATAAAGAATCTGATGTGGTGCAATTCTTGATAAGCAAAAGATTTGAAGAATTTGAAGACCTCTACCAAAAGCTAAATGCGAGATTCCCAAGTGTATTATTCCCTGCACTACCAGCGAAAAGCATGATAGTGAATACCAGTGTTCTTCTTGCGAGGAAAAAATTTGCAGATGAGCTCATGCATCTGGTTGCTAGAACACAAAAGCTTTGCTGCAGTCCAATGATCCTTGAATTCTTGGGGGTTAGAAAGCCATCAAAATCAACACAGCAAACAATTGTCGTGAGTGAAGATATCTATGAAGAAAAGAAAACAGAGGAGGTTGAAAGCACACCTGAGCAGACTCTATCATCCGAGATCGAACAATCAGCACAAAATGAAGCAAGGAAGCAAGAAGAGGAACATCAAGATTTATTTGTCCCAGTTGATTTAGACACATCAAATGTTTCTGACATATCAGGGCAGGATGATATCTTTAATCCTTCAAATTCAAAAAAGCTTCAGTTGCATGCTTCGTTGTTTGAAGATGAATTAGAAAAACCGGACCAGAAGGATGAAACAGATCTGTTTATGCCGGCTGATGCAAAGGTTGAAGTGCAACGAAAAGTCGCTTTGGAGGAGGATGAAGATACAGATGATTTATTAAATGTGGAGGAGAGTATGGATGACCTACTCGCTCTAAGTAAAAAGTCAGAAAGAAAACAATCAATCAAAGCGGCAACAACAACATCTCGACCATCAGTGAAACCGAAACCCCAAACAAGAACATCATTTGAAGCGAACCCTGAAGATGACGATTTCTCGCTACTGGCTGCTGCTTCGAAAACAAGCACATCAGTTGAAGAAAAGGCTGAAAAGGATTTCTTTGCAGAAGCAAGAACCAAAACCAGAGGAGCATCATTGAGAGACAAGAGGCAACAGCTAAGCAAAGAAGATACACTCGATGACATTTTTGGCAAGGGAAAAGACTCGAGGAACATTTTTGGCAAGCATAATGACGATGACTTATTTACTACTCCAGCCGCAGCGACCGTTGATGAGGCCTCTGCGTTGGAGGAGGATGATATTATGAAATACATTAATGATAATCTGGATCAAGATGTTGCTAATCTGGATTTATGAGATTCACAAGATTATGGTATGTTTGCTCTAATCTAATCATCTTTAATTTTGGTAGATTAATCATCACCTCAATCCCAGTGGTACCGTGGAATATAAGCTTCTTTTCAGTGCTCTACATAGCTCTCATGTAAACCATTCATAAAAACAGGCCTGGTCAATAAATTATTAAAGTTCACCTAAAAATCTTGATACATAGAGGCAAATCTGAAAATGCAAGTAGGTAGGTAGAAAAGGCAAAAGAAATTTGGGATTGTCTGCTGTAAGTAACTGTCATTGAAGAGGTTTGGATAATATATTCGAGATTTTATTTTCATTTCCAATGAACTTTTTTCGTACTCTATGcatgggtactgtgaacacgagttgtgtcgatcgtgtccacaatacctggcctaaatgttactaaatgaataaatgtagtttgttaccttgcttgtcttcatttcatgagtatctctgctcttttgtttcggcagccactcttgcttactttcaacgacataaggtttgaacagtgccgcgctctgaaagtcatcgcctgacaactgtcgctcaggtgataacttccagagagcggcattgttcaaaccttaggccgttaaaagtaagcaagaatggctgccgaagcaaaagagcagagatactcatgaaatgaagacaagcaaggtaacgagctacgtttattcatttagtaacatttaggtcaggtaACAATACCCATGCTCTATGAAGCCTCGAAAATTTACTTGAACTGTCTGTTACAGAAAATGTGCTCTGTGCAAGTACGACAAATTGCAACCACAAAAACAAGTCATAGCTTGTTCTTGACGAAAGTTTTTCGCATCGATTTCATTAGTTTTGTAGAAATATTTTTAAGAGAGTAAATACTTTTTCTGATTTTTCGTTATGAAAGATCTTTTCATCTGTAGCTGTTTAAAAGGCAGTGTTTGCCGAGATACTGTAGGTTTCTTTTTGATGGCTTCAAGAACATTTAGGGGACCTTTAATTAGTGTGTAAGAAAATTTCTACATGACACACGATAAGTCAGTACGCTGATTCGCCACCCGTTGTCTTTTTTGTCTGGTAATTTTGTAAGATTCCTTTAATCTGTTTTTCTTGAGGTCTGCAAATTCATATCTTTTAGAAGCTGTATCAAAATTTCTAATAAATTGAATAAATTTTGTTTGATTGGAAGTTAAAGTATCTGTGAGACGAAAAGTTGTGGTTTTTGAattattatcattattattatcattattattatcactattattattgttattagtattcttacaattatGAAATATGGGGTTGAATTCATAACTGATTCTAATTTCATATCAAGATGGTAACTTTGGTAGTTTTGTTTTGTAGTATTAAGGCACTTTAAATGACAAAGAAATTATCTGGTTTCTATTCATGGAAAGTATTTTGTATTTGCCCCTCTTGTGTGCTCGTACTGTTAGATCTGGTCGGAAAAGATTCAGAGTTTTCATCTCAGAGCAGTGATTATGATGTTAATAGAAGAACCTAGTGGAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00787 all species →	PX	PX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001683 all species →	Domain	Phox homology	Interproscan
IPR036871 all species →	Homologous_superfamily	PX domain superfamily	Interproscan
IPR039701 all species →	Family	HCLS1-binding protein 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14431 all species →	HCLS1-BINDING PROTEIN 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24094	HS1BP3; HCLS1-binding protein 3	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.