Gene detail

Detailed information of scaffold189.g3.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold189:37174...59994
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold189.g3.t1

gggtgcaaacaaaagcaaagaacagtgaacttcaagtttcacggctctaaatattacacaccattctcaattcaaaggtaatgaaaactccaccaaagcgcgggtcgctaatgtgtgaaaagcgaaatcagcgcgcggattggtagctgcgaggcccagccctcattattcaatgcgaaaaaacaccaaacaacttttcactgcattcgcagacgccatattgaaacttggcgagcaaggaggacaacaactcgaagcaaatttttcaaaaccttcacctgaagaacacgacgcagcattcacctatgttttatcataaaatcaaagaaaagggtgtcctcaaacagcctgtgctatcaaaacggagatcgcagtactataaaatgaaatctggagctcaaatgtttggttggtggagagcaggccttcgactcgatccgccatgacacttcaacgaagctggcgccgagagactcgacgatttccctcacgagtaaggatttccccagatattttttaactagatttaatttgagtaatttgagcacatattttgatgaaaattgggaagagtttttgagagcaaccaacacagccctagacttatgacgatgagtcccttgtatccctgcggtaccttgctcaacagggactcatattgaaacagttaaaaacctgaccctatcttctgcattcgatctatcaaatctggatcgaacgactgcttcggctcagttcaacggtcactcttcagaaaggaaatgcgatagaaaccacggtaagcagtattcatccgaagaagaaagttcactttacctgcttgaacttagtgataacagaatctctagcggtgtggacaatttattaaaatgtcctaagttgacacatctcagtttaagtggaaataaaatcaaggattttgaagctcttgaccaattgaaagatttgaaagaactgaagagtctggatcttttcaattgtgaagtaacatcagaaaaggattatagacaaagactctttggattaataccatcacttgaatttctggatggcactgataaagatgaccaagagatagaggatgaagatgaggaagaggttgacggagaagatgatgatgatgaggaagatgatctagatgtcgaagatgatgaatttggtgatgagctagatgatcaagacgatgatgatgttgaggaagacgatgaagatgatgaagatggggttgatgtagatgggcatatagaaggggcagttggtgacgaagatgatgacgaggacgatgatgatgacggagagttaggagaagtaggagatgagggtgatgatgacgatgatgacgaagaggatgatgacgatgacgaggatgaagaggagtgtgatgacaatgaacctggcttggatatgcttcaaaaagagaatttatcggaggaagaagatgagggtgaatttgaaccagacgctgatgatgacgatgatgacgaattaaacgaagatgatgatgatgaagatgatgaggacgagccagatgcacgtggtcagaaaaggaaacgagaaggagaagaggatgattgatcacatgattcttactgattgatcacatggaaataactgattggtcacatggcaggttttcataaatcacgtggtaatgtcgtgagtaaatagacacaagaactctgtaattaaagccgtgctgtgttgacctgtcatggccaggtcagaggtgaaaggtgccacattcgagaacaatcgtctttcttaaacagtccaagtttccgatccaagtttccaatccacagtagcctccattttaaaaaggaaagctgaagaggtctactaaaatttgaacaaagtacaccccctgtttttttacaatttcaataagatgtgcccagattttaaaggtcaaaccgatcacatgtcacaaaatgattgatcataaggaaataattgattgatcacatggtaatgtctctaaataactgtccgtgtttcaggatatatccccgttagtgttaggaaagtttgagaagtctttactgaaatttaacgctaaatcgacagaattttttacaatttttataagatgtgcgtcttcagtcttttgcaagaaggaagctatgtcctggatttggtaagcccagaaaaactaccctatcttatcgcattcccgtttatcggttctcatctttttacacttgcttgtgcagttgataaataaatgtgtgtcaagaggacaatttcgttaggttaaaaagggtttagttagtaacaatagatccaaggggcgtatcactctgtaaaaatctcgtacgcctttggcgaaaatcattttgttttcaagaaaatacgtaaagttgtccctaaaaatcctatttctttaaaggcaatctgtctcactcataattggctgaagattgtttgtggagattaaatttgtatgacagat

Transcript

scaffold189.g3.t1

GGGTGCAAACAAAAGCAAAGAACAGTGAACTTCAAGTTTCACGGCTCTAAATATTACACACCATTCTCAATTCAAAGGTAATGAAAACTCCACCAAAGCGCGGGTCGCTAATGTGTGAAAAGCGAAATCAGCGCGCGGATTGGTAGCTGCGAGGCCCAGCCCTCATTATTCAATGCGAAAAAACACCAAACAACTTTTCACTGCATTCGCAGACGCCATATTGAAACTTGGCGAGCAAGGAGGACAACAACTCGAAGCAAATTTTTCAAAACCTTCACCTGAAGAACACGACGCAGCATTCACCTATGTTTTATCATAAAATCAAAGAAAAGGGTGTCCTCAAACAGCCTGTGCTATCAAAACGGAGATCGCAGTACTATAAAATGAAATCTGGAGCTCAAATGTTTGGTTGGTGGAGAGCAGGCCTTCGACTCGATCCGCCATGACACTTCAACGAAGCTGGCGCCGAGAGACTCGACGATTTCCCTCACGAGTAAGGATTTCCCCAGATATTTTTTAACTAGATTTAATTTGAGTAATTTGAGCACATATTTTGATGAAAATTGGGAAGAGTTTTTGAGAGCAACCAACACAGCCCtagacttatgacgatgagtcccttgtatccctgcggtaccttgctcaacagggactcatattgaaacagttaaaaacctgaccctatcttctgcattcgatctatcaaatctggatcgaacgactgcttcggctcagttcaacggtcactcttcagaaaggaaatgcgatagaaaccacggtaagcagtattcatccgaagaagaaagttcactttacctgCTTGAACTTAGTGATAACAGAATCTCTAGCGGTGTGGACAATTTATTAAAATGTCCTAAGTTGACACATCTCAGTTTAAGTGGAAATAAAATCAAGGATTTTGAAGCTCTTGACCAATTGAAAGATTTGAAAGAACTGAAGAGTCTGGATCTTTTCAATTGTGAAGTAACATCAGAAAAGGATTATAGACAAAGACTCTTTGGATTAATACCATCACTTGAATTTCTGGATGGCACTGATAAAGATGACCAAGAGATAGAGGATGAAGATGAGGAAGAGGTTGACGGAgaagatgatgatgatgaggaagatgatCTAGATGTCGAAGatgatgaatttggtgatgagctagatgatcaagacgatgatgatgttgaggaagacgatgaagatgatgaagatggggttgatgtagatgggcatatagaaggggcagttggtgacgaagatgatgacgaggacgatgatgatgacggagagttaggagaagtaggagatgagggtgatgatgacgatgatgacgaagaggatgatgacgatgacgaggatgaagaggagtgtgatgacaatgaACCTGGCTTGGATATGCTTCAAAAAGAGAATTTATCGgaggaagaagatgagggtgaatttgaaccagacgctgatgatgacgatgatgacgaattaaacgaagatgatgatgatgaagatgatgaggacgagccagatgCACGTGGTCAGAAAAGGAAACGAGAAGGAGAAGAGGATGATTGATCACATGATTCTTACTGATTGATCACATGGAAATAACTGATTGGTCACATGGCAGGTTTTCATAAATCACGTGGTAATGTCGTGAGTAAATAGACACAAGAACTCTGTAATTAAAGCCGTGCTGTGTTGACCTGTCATGGCCAGGTCAGAGGTGAAAGGTGCCACATTCGAGAACAATCGTCTTTCTTAAACAGTCCAAGTTTCCGATCCAAGTTTCCAATCCACAGTAGCCTCCATTTTAAAAAGGAAAGCTGAAGAGGTCTACTAAAATTTGAACAAAGTACACCCCCTGTTTTTTTACAATTTCAATAAGATGTGCCCAGATTTTAAAGGTCAAACCGATCACATGTCACAAAATGATTGATCATAAGGAAATAATTGATTGATCACATGGTAATGTCTCTAAATAACTGTCCGTGTTTCAGGATATATCCCCGTTAGTGTTAGGAAAGTTTGAGAAGTCTTTACTGAAATTTAACGCTAAATCGACAGAATTTTTTACAATTTTTATAAGATGTGCGTCTTCAGTCTTTTGCAAGAAGGAAGCTATGTCCTGGATTTGGTAAGCCCAGAAAAACTACCCTATCTTATCGCATTCCCGTTTATCGGTTCTCATCTTTTTACACTTGCTTGTGCAGTTGATAAATAAATGTGTGTCAAGAGGACAATTTCGTTAGGTTAAAAAGGGTTTAGTTAGTAACAATAGATCCAAGGGGCGTATCACTCTGTAAAAATCTCGTACGCCTTTGGCGAAAATCATTTTGTTTTCAAGAAAATACGTAAAGTTGTCCCTAAAAATCCTATTTCTttaaaggcaatctgtctcactcataattggctgaagattgtttgtggagattaaatttgtatgacagat

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14580 all species →	LRR_9	Leucine-rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR045081 all species →	Family	Acidic leucine-rich nuclear phosphoprotein 32	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11375 all species →	ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18646	ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.