Gene detail

Detailed information of scaffold189.g37.t1 in Morbakka virulenta

Genomic Location: scaffold189:1408225...1443106
NR annotation: CAR62457.1, putative Pdx/Xlox homeodomain transcription factor, partial [Turritopsis dohrnii]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold189.g37.t1

GCTACTAATGGTATTTGTTCTGTGAGTGACATTTCTTTTACGAAAGGACACCCTCTTATGCTTTTTAAAAACGCATACAATTTGGAGGCTATACGACAGATAGGAAAGAAAAAAGACAGAGTAGGACTGAATTTTTCAAGACATCGGTAACATTAGAAACTCGAGATACACTGTGATGGAGGATAATTTAACAACAAAGAGACTCTATTGGTACCGTCAGCAATGTTTGGGTCATCCAATTTATCCAAATGGACAAAATAATCATGGTCTTGCTTTTAATCCTTCGACAGATATCTATCGAAGTGAGACTTTGCCTCATAATACAGGAGTACAGGAAAGACAATATCAAAATACAAGTACAGTTTATAACTCAAATTCCAGTATAGAGGAGAAACCTCTTACATCTTGTCGATTTGATAAGCTGGGACACCACTCGAGTCTGTCAACATTGTCGTGTAATGAGGAAATTAGGAACAGCAAAGGGAACAGTGTCAAAGTAACAGCAGGGAGAAAGGATTTAGCGAACTTGCCACCACTTGACATTGCTGAGGTTATAGAGACACTTTCCTCTTTGTCAAATGATGGGAAAATTGGGAACAAGAAAGAAACCATTAAAAGAAATGAAGATAAATCAAAAGAAGAGTCCCCAACTGGAGAGAAGGCACCAAAGTCGTGGAGGTCAGCAAAAGTAAAGAAACGCACTCGAACGACATACACACGGGCCCAACAAGTTGAACTTGAAAAAGAATATCATTATAGCCGATATATTTCGAGAGCACGTAGAATCGAACTTGCGAACGGTCTTAATTTAACTGAAAAGCATATCAAAATTTGGTTCCAGAATAGGCGAatgaaagagaagagagatgaagatgaacttaaagaagaCAATTTTGATGTTGCATGTTTTTGAAAATATTACTCTTTGGATAATTTGGAGCCATATTAATAATACATGTCACAGGAATTCGTACTCAGATCTTCAAATTTCCTAGATATTGCCAAAGCAGAATAACATAAAATAATATAGATGgagaggattaggaattgtaaaaattatgaaaaacatgtgtacaccgaactggattgggatcagtagctggtggctttcgttcacaACCAGGGCATATTTTGCAAACTTTTCTTTTACTTAAACGGACAATTCTCTCCCTAGGTCCCTTAACACTGGGATTGTAGAAATAAACATTTGCACAATttcaaatcctttccatttatgatacactatttctataattttcttgccctttacgtatgttgtgatcagtttaacagacctttggatggggcgtcgtggttctgttaggtcccagccctataagcggcattgagataaaaattccaactgtaggaagctggatagaaaacggcattccaactgatatatttagttaagaaaatgatctgtttagaattgagcgctgatggctcagatggtagggcatgtgatcttaatagccaaagacactggttttaatccatttcggtacacatatatttttcacattcctACAAATCTTATGAATTGTCAACATAATAAAGCACTTGCAATATCGGTTTAACTGTCATGCAGCCGACCCTCACATGACGAACCCAATGCATGTATAGATCAGGAACAGTTGGAAAATTACTTTGAATGAAAAAGGAGATACCTCCGCACTCTAAAAATAAAGCATATATAAGTTTTTTCAACGAAAAGAAGCCGAGAAAGAAGAATAGAACACCAAATAAGAACTAGAAACCTTTAAGTAATTGACCATTTTCTTTTTTTACCAAAGTAAGAACTAAAGGGAACATGTAACAATCTTTTGATGTGTGGTATAAGCTGGGGCGCCTGAAGCAATTTTTTTCTGTCGGAGGCAGTTCCTGAAAAAGGGGAGCCTTATGAATTACATATTACGTTGTAAATGCAAAGCTGCTAAAAAGCAGGAGCTTTTTTAAGAGCAAAAAATACAATCAAAATTTATAGTTTGGCAGCTTTTTTCGCTACAAAACTCTCCTTTGTTTGCTTCTTTGTAAGCCAACCTCTTGAAAAAAACAGCGGAACTGCAATATTGGCCCCAGGATTTACTATTCCAGATCTGTCTTTGTAGCATAAAGGCAGAAGGAGAAGCTGTCTCTGTTCCTGCCTGTGGTGTCGTAGCGTATAATAAACATCAAACCTAACa

Protein

Uniprot

Uniprot term	Description
P17138	Homeobox protein HTR-A2 (Fragment) OS=Helobdella triserialis OX=6413 PE=3 SV=1
P31247	Homeobox protein Hox-B3 (Fragment) OS=Xenopus laevis OX=8355 GN=hoxb3 PE=2 SV=1
P14837	Pancreas/duodenum homeobox protein 1 OS=Xenopus laevis OX=8355 GN=pdx1 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR020479	Domain	Homeobox domain, metazoa	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45664	PROTEIN ZERKNUELLT 1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09305	HOX_5; homeobox protein HoxA/B/C5	-	Transcription factors	ko03000	deepkoala