Gene detail

Detailed information of scaffold19.g167.t1 in Aurelia aurita

Genomic Location: scaffold19:1932465...1936856
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01344 all species →	Kelch_1	Kelch motif	Repeat	Interproscan
PF13415 all species →	Kelch_3	Galactose oxidase, central domain	Repeat	Interproscan
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006652 all species →	Repeat	Kelch repeat type 1	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR052821 all species →	Family	F-box only substrate-recognition component	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46432 all species →	F-BOX ONLY PROTEIN 42	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0019005 all species →	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:1990756 all species →	Molecular Function	ubiquitin-like ligase-substrate adaptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold19.g167.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of scaffold19.g167.t1 across 22 RNA-seq samples of Aurelia aurita. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

22Samples

22TPM > 0

19Conditions

9.5Max TPM

6.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
complete polyp	3	3	8.82	9.48
polyp not induced	2	2	6.93	8.13
polyp endoderm from body column	1	1	3.69	3.69
jellyfish bell edge	1	1	4.20	4.20
strobila non-segmented part	1	1	6.69	6.69
polyp 12h induction with 5M2MI +20C	1	1	5.77	5.77
polyp 24h induction with 5M2MI	1	1	6.52	6.52
strobila segments	1	1	6.75	6.75
strobila heads	1	1	5.52	5.52
polyp 24h induction with 5M2MI +20C	1	1	5.47	5.47
jellyfish ropalia	1	1	3.79	3.79
polyp head region	1	1	6.71	6.71
polyp 20h induction with 5M2MI +20C	1	1	6.09	6.09
complete strobila	1	1	9.29	9.29
13 jellyfish ropalia	1	1	5.64	5.64
complete juvenile jellyfish	1	1	9.02	9.02
polyp ectoderm from body column	1	1	6.01	6.01
jellyfish bell edge without ropalia	1	1	9.06	9.06
3 juvenile jellyfish (~7mm in diameter)	1	1	5.99	5.99

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR7992486	complete polyp	complete polyp	polyp	not recorded	SRP164891	9.48
SRR7992487	complete polyp	complete polyp	polyp	not recorded	SRP164891	8.96
SRR7992484	complete polyp	complete polyp	polyp	not recorded	SRP164891	8.01
SRR8090261	polyp not induced	polyp not induced	polyp	not recorded	SRP164891	8.13
SRR8090262	polyp not induced	polyp not induced	polyp	not recorded	SRP164891	5.73
SRR7992468	polyp endoderm from body column	polyp endoderm from body column	polyp	not recorded	SRP164891	3.69
SRR8090258	jellyfish bell edge	jellyfish bell edge	jellyfish	not recorded	SRP164891	4.20
SRR8090265	strobila non-segmented part	strobila non-segmented part	strobila	not recorded	SRP164891	6.69
SRR8090264	polyp 12h induction with 5M2MI +20C	polyp 12h induction with 5M2MI +20C	polyp	not recorded	SRP164891	5.77
SRR8090263	polyp 24h induction with 5M2MI	polyp 24h induction with 5M2MI	polyp	not recorded	SRP164891	6.52
SRR8090260	strobila segments	strobila segments	strobila	not recorded	SRP164891	6.75
SRR8090259	strobila heads	strobila heads	strobila	not recorded	SRP164891	5.52
SRR8090256	polyp 24h induction with 5M2MI +20C	polyp 24h induction with 5M2MI +20C	polyp	not recorded	SRP164891	5.47
SRR8090257	jellyfish ropalia	jellyfish ropalia	jellyfish	not recorded	SRP164891	3.79
SRR7992469	polyp head region	polyp head region	polyp	not recorded	SRP164891	6.71
SRR8090255	polyp 20h induction with 5M2MI +20C	polyp 20h induction with 5M2MI +20C	polyp	not recorded	SRP164891	6.09
SRR7992485	complete strobila	complete strobila	strobila	not recorded	SRP164891	9.29
SRR7992483	13 jellyfish ropalia	13 jellyfish ropalia	juvenile jellyfish	not recorded	SRP164891	5.64
SRR7992482	complete juvenile jellyfish	complete juvenile jellyfish	juvenile jellyfish	not recorded	SRP164891	9.02
SRR7992481	polyp ectoderm from body column	polyp ectoderm from body column	polyp	not recorded	SRP164891	6.01
SRR7992480	jellyfish bell edge without ropalia	jellyfish bell edge without ropalia	juvenile jellyfish	not recorded	SRP164891	9.06
SRR8090266	3 juvenile jellyfish (~7mm in diameter)	3 juvenile jellyfish (~7mm in diameter)	jellyfish	not recorded	SRP164891	5.99

Source: CnidoSite RNA-seq expression matrices (AAURI1_TPM, StringTie quantification over 22 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.