Gene detail

Detailed information of scaffold19.g184.t1 in Aurelia aurita

Genomic Location: scaffold19:2057725...2066086
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold19.g184.t1

ctgaacaatttaacagtgatacgggaatccaaatagctcacaggcgcaatcgcaaacaatgttatgatatacttaaaatagacttaataatgaattctaaaacattgctgctagttttcagtttgggattcgtgtttttaaatgcaaatggttatgttttaaagttgaagaagaatataaaactgcaggatgaagacgaaaatgaattcagctcggttcctagagctaatacaaaacagcaaattgatgtaccaaattctgatgaaaatgatgagtcagcagcttcaaaaagagaaagtgaatcttccatcatcttaacgaaattactcaatgctgacccaagtactgcttcaagtgctgctgtgaaggagacatcccatgtagatactagcaatactgattctgctagtgaacaacgggaaattgattcgtctgaaaatccgcaagaggcttctttgcgagaagtatcaaaggcagaggaagcaagattgaaggctgaagaagctaaacagaaagctgacgcggcaaacaagcaagcagatgaagcaaaacaaaaggctgcagaagcaaacgcaaaagcagatgaagcgaagaagaagatagaagccaagaaaaagatggaagaagccaagaaaaaagaggaagaagccaaaaagaaagaggcagaggctaagaagaaagaggcagacgcaaaaaaggagcaggaagaagcagaaataaaagaacgagaagataagaaaaaattggcggcagccaagaaaaaggaagaagaagccaagaagaaagaggctgaagtaaagaagaaggaagatgaagagaaaaagaaagcagaagaagccaggaaaaaagaggctgaagcaaaagaaagattagaagcagcaaagaaaaaagaagaagaagccaagaggaaggaagaagaagcaaagaagctagcagaagaggctaagaagaaggaggaagaggcaaagaaaaaagcggcagcagctaagaaaaaagcagaagaagacaaaaagaaagctgaagccgctaaaaagaaagcagaagaagacaagaagaaggcagaagaagataagaaaaaggcagaagaagcaaagaagaaggcagaggaagctgaaaagaaagctaaagaagaaaagaagaaggcagaggaagccaagaaaaaggctgaggaggaaaagaagaaggcagaagaagaagccaagaaagctgtagataaagcaaaagcagaagaaaagaagaaaaaggcagcaaaagcattgaaaaaagcggaagaggaaaaaaagaaagcggaagaagcagaaaagaaagcagttgaagaaaagaaaaaagcagaggaagccaagaagaaggcagaagaagagaagaaaaaggtagaagaagaaaagaaaaaagcagaagcagcccaaaggaaagcagaagaagaacaaaagaaagcagaagaagaaaagaaaaaagctgaggaagccaaaaaacttgcagaagcagcaaagaaacaggcagcagaagaaaagaaaaaggcagaagcaatcaaggagaaggaagaggaggaaaagaggaaggcagaagcagctaagaagaaggcagaagaagaaagacaactggctgaagcagccaagaaaaaagccgaggaagcaaggaagctggctgaggcaaaaaggcagaaagcagaagcagaaaagaagaaggccgaagaagcaaagaagagagcagaagaagacaagaagaaggcggccgaagagaaaaagaaagcagaagaagacaagaaaaaggcagcagaagagaaaaagaaagcagcaaaggaggccgagaaaccaatagcaccccctacaaaagcagcaccaacaacaattcaactgacaagaggaaaaggtgtcccaaacgtcaatacaaaagcaactgtccctactacgacaccagaagcaagtgccaaaccaccgacccctgctcaaacactccctactgttacaccagtaaaagtaaccctaccaatggtaacaccgactaaggttaccccaacaacccctcctgctaccccaccaaaagtaaccttaccaatggtaacaccacctaaggttaccccaacaacccctcctgcaaccccatcagaagcaaccttaccaatggtaacaccacctaaagtcactcctccgactacccctgctaccttacctaaagcaactctgcccatggctacccctcctaaccccaccccactacctcctcctcagcccccaatgccccctttaccccttaaacctccaagcccacctgcgcctcctcctatccctacgtctccgcaaccaacaacaaagaaagcagaaccaccgacaaaagcagtggtaacgacccccgtcaatcctggagcaacaactcaacctacaaaaggaaaaggtatccctaagcctgatgacgataagctaacaactccccagccgggtgtgacaccaactacacagtcaaccaaaggtaaaggaatacccaaggggaaaaacccaacgacaccctcacctacaaaggcaacccctgctccgccaaagccaactgagggcgattccaaacaaggcaagggtattcccaaacccggagagccaaacaacacacctaatcataatggtttagttcaagggaatggagaactgggaagacttgcatatactggtcttgattctgcatcaggatctgggcaggaaagtacagtgcatgcaattaccaaagatacatcagccccagcggaggaagaagagaaactgttaccatcttggcctcgagatttcacctggaacgcagatgggatgccaaaagcatgtgactgtaaaaaagatacatgtgattgccgatgcctagatattgcagaaccagccgacagccataagtggaatgataattacctatgttttgccaaagccaaatatgtaccagatataagatggtctcataatggaccaattgatggcatgaaatgtacacgcacctcagaaccagaagaccctgaatcatggcaggacaattatatttgtgtgccaaaaagtagcccatatgatttcatgtggtccaataatggttccattgaaaatgaacacattggatgtctcaaaatcgatgaaccaagtgaacctgggaagtattggagggacaactatctttgtgccacaagatcatgagtgacaaagtggcaatgtatgtcgtggattccaatgcatttggactgaagttagacaatttagtttttgacgatttgtgtctttggaattcacacttttcgtcatgctatttgtgaaaagagagtttgttgttgttgtttgttgttaaggtacccttagtctcagtttattgtagatgggtgtagaaaggctgtctttctcattttttggggtcaagttaacaatgggcttcaacgttaaaaattcaaatcgaagttacacacgcgcttgaacaatggatatccagagaaacaatgctgtgcctgagtgttttctttgttctatttatagacaagattatttaccattacacattcactttaaactctgatctacaacaattgataccgacaaaatattagcttcaagaatcagcatacctggtaaaataaagcataggttccaaatctttaaaaaggtcggcgtaaaattctgtgacccattcctttgaatggaatggcttgaaagaaactttagctactttgctataactctcccgttggactttccagaaatcttcaatattttcgaaattacagagtatttcatatttcaactcatttgaggatgtgacgtcatcaaatttctaaatcgcaaaccagaagagtgaaagacttttgcttggtaccatattgtagacgttcataaactatgtttttctaaaaaattattcgatgtttcctcgaaaagtttagaaattacgatggttttaagtttttttcaaaagttttcttgaattcttaaaaaagaagaaaagcactctaattttgaaaatattgaagatttctgaaaagtccaaaggtagaattattacaaagtagctaaagtttctttcaagtcattcgattcaaagaaataggtcacagaattttataccgacctttttaaagatttggaacctatgctgtaaaataagcgaaaggatcttctaaagccaatagcttcacgcaatttaaatgttgctccaaatttggtgaacgtgatttgttgatcagcgaagaagcttaacaaagttttcttgttttaggtgctgtttatatgcgcagggccagccctcctagaagggagggctggattttattttaggatcaagcctcttggttgcgtttatataggaaagtaccagccctcctctcatacgaaaaagaatttttaagagattaaaccgcaaggtgaggtctgcagggggatagccctcctccatataaacagcactttattctataagttatcccaaataccgccaggtaggagcagcgagcagtaacctatactggggttcaattttttataaatattttcaaaattgcataatgggttacggattgctgatttgaaaccaagacgaaacggcctagcagaagacatacgatattgtttttgggcttaacgtgatcaacgatattctctcaaaggccacttgccgagtaattagcaaaattctcactttcccaaaaggcgtccacatatgctaaagaaacaaaaattttgctagaattcccaatgagcaaaccccctttactgagcccaaaatctcaatttcaaagctctttgattgatgccggtttgataatgctttgataagtaatacaaactttacgtctaaaagcgttatatatatacatttagtttgcagcattgatgtttttgtaataaggatttcaatatagcctttatttcgcgtttctttttacttcattattttaaagtgaatatgataagaaaatttttatggtctaatcttatgcattaaacattcctgatcacg

Transcript

scaffold19.g184.t1

CTGAACAATTTAACAGTGATACGGGAATCCAAATAGCTCACAGGCGCAATCGCAAACAATGTTATGATATACTTAAAATAGACTTAATAATGAATTCTAAAACATTGCTGCTAGTTTTCAGTTTGGGATTCGTGTTTTTAAATGCAAATGGTTATGTTTTAAAGTTGAAGAAGAATATAAAACTGCAGGATGAAGACGAAAATGAATTCAGCTCGGTTCCTAGAGCTAATACAAAACAGCAAATTGATGTACCAAATTCTGATGAAAATGATGAGTCAGCAGCTTCAAAAAGAGAAAGTGAATCTTCCATCATCTTAACGAAATTACTCAATGCTGACCCAAGTACTGCTTCAAGTGCTGCTGTGAAGGAGACATCCCATGTAGATACTAGCAATACTGATTCTGCTAGTGAACAACGGGAAATTGATTCGTCTGAAAATCCGCAAGAGGCTTCTTTGCGAGAAGTATCAAAGGCAGAGGAAGCAAGATTGAAGGCTGAAGAAGCTAAACAGAAAGCTGACGCGGCAaacaagcaagcagatgaagcaaaacaaaaggctgcagaagcaaacgcaaaagcagatgaagcgaagaagaagatagaagccaagaaaaagatggaagaagccaagaaaaaagaggaagaagccaaaaagaaagaggcagaggctaagaagaaagaggcagacgcaaaaaaggagcaggaagaagcagaaataaaagaacgagaagataagaaaaaattggcggcagccaagaaaaaggaagaagaagccaagaagaaagaggctgaagtaaagaagaaggaagatgaagagaaaaagaaagcagaagaagccaggaaaaaagaggctgaagcaaaagaaagattagaagcagcaaagaaaaaagaagaagaagccaagaggaaggaagaagaagcaaagaagctagcagaagaggctaagaagaaggaggaagaggcaaagaaaaaagcggcagcagctaagaaaaaagcagaagaagacaaaaagaaagctgaagccgctaaaaagaaagcagaagaagacaagaagaaggcagaagaagataagaaaaaggcagaagaagcaaagaagaaggcagaggaagctgaaaagaaagctaaagaagaaaagaagaaggcagaggaagccaagaaaaaggctgaggaggaaaagaagaaggcagaagaagaagccaagaaagctgtagataaagcaaaagcagaagaaaagaagaaaaaggcagcaaaagcattgaaaaaagcggaagaggaaaaaaagaaagcggaagaagcagaaaagaaagcagttgaagaaaagaaaaaagcagaggaagccaagaagaaggcagaagaagagaagaaaaaggtagaagaagaaaagaaaaaagcagaagcagcccaaaggaaagcagaagaagaacaaaagaaagcagaagaagaaaagaaaaaagctgaggaagccaaaaaacttgcagaagcagcaaagaaacaggcagcagaagaaaagaaaaaggcagaagcaatcaaggagaaggaagaggaggaaaagaggaaggcagaagcagctaagaagaaggcagaagaagaaagacaactggctgaagcagccaagaaaaaagccgaggaagcaaggaagctggctgaggcaaaaaggcagaaagcagaagcagaaaagaagaaggccgaagaagcaaagaagagagcagaagaagacaagaagaaggcggccgaagagaaaaagaaagcagaagaagacaagaaaaaggcagcagaagagaaaaagaaAGCAGCAAAGGAGGCCGAGAAACCAATAGCACCCCCTACAAAAGCAGCACCAACAACAATTCAACTGACAAGAGGAAAAGGTGTCCCAAACGTCAATACAAAAGCAACTGTCCCTACTACGACACCAGAAGCAAGTGCCAAACCACCGACCCCTGCTCAAACACTCCCTACTGTTACACCAGTAAAAGTAACCCTACCAATGGTAACACCGACTAAGGTTACCCCAACAACCCCTCCTGCTACCCCACCAAAAGTAACCTTACCAATGGTAACACCACCTAAGGTTACCCCAACAACCCCTCCTGCAACCCCATCAGAAGCAACCTTACCAATGGTAACACCACCTAAAGTCACTCCTCCGACTACCCCTGCTACCTTACCTAAAGCAACTCTGCCCATGGCTACCCCTCCTAACCCCACCCCACTACCTCCTCCTCAGCCCCCAATGCCCCCTTTACCCCTTAAACCTCCAAGCCCACCTGCGCCTCCTCCTATCCCTACGTCTCCGCAACCAACAACAAAGAAAGCAGAACCACCGACAAAAGCAGTGGTAACGACCCCCGTCAATCCTGGAGCAACAACTCAACCTACAAAAGGAAAAGGTATCCCTAAGCCTGATGACGATAAGCTAACAACTCCCCAGCCGGGTGTGACACCAACTACACAGTCAACCAAAGGTAAAGGAATACCCAAGGGGAAAAACCCAACGACACCCTCACCTACAAAGGCAACCCCTGCTCCGCCAAAGCCAACTGAGGGCGATTCCAAACAAGGCAAGGGTATTCCCAAACCCGGAGAGCCAAACAACACACCTAATCATAATGGTTTAGTTCAAGGGAATGGAGAACTGGGAAGACTTGCATATACTGGTCTTGATTCTGCATCAGGATCTGGGCAGGAAAGTACAGTGCATGCAATTACCAAAGATACATCAGCCCCAGCGGAGGAAGAAGAGAAACTGTTACCATCTTGGCCTCGAGATTTCACCTGGAACGCAGATGGGATGCCAAAAGCATGTGACTGTAAAAAAGATACATGTGATTGCCGATGCCTAGATATTGCAGAACCAGCCGACAGCCATAAGTGGAATGATAATTACCTATGTTTTGCCAAAGCCAAATATGTACCAGATATAAGATGGTCTCATAATGGACCAATTGATGGCATGAAATGTACACGCACCTCAGAACCAGAAGACCCTGAATCATGGCAGGACAATTATATTTGTGTGCCAAAAAGTAGCCCATATGATTTCATGTGGTCCAATAATGGTTCCATTGAAAATGAACACATTGGATGTCTCAAAATCGATGAACCAAGTGAACCTGGGAAGTATTGGAGGGACAACTATCTTTGTGCCACAAGATCATGAGTGACAAAGTGGCAATGTATGTCGTGGATTCCAATGCATTTGGACTGAAGTTAGACAATTTAGTTTTTGACGATTTGTGTCTTTGGAATTCACACTTTTCGTCATGCTATTTGTGAAAAGAGAGTttgttgttgttgtttgttgttAAGGTACCCTTAGTCTCAGTTTATTGTAGATGGGTGTAGAAAGGCTGTCTTTCTCATTTTTTGGGGTCAAGTTAACAATGGGCTTCAACGTTAAAAattcaaatcgaagttacacacgcgcttgaacaatggatatccagagaaacaatgctgtgcctgagtgttttctttgttctatttatagacaagattatttaccattacacattcactttaaACTCTGATCTACAACAATTGATACCGACAAAATATTAGCTTCAAGAATCAGCATACCTGGTAAAATAAAGCataggttccaaatctttaaaaaggtcggcgtaaaattctgtgacccattcctttgaatggaatggcttgaaagaaactttagctactttgctataactctcccgttggactttccagaaatcttcaatattttcgaaattacagagtatttcatatttcaactcatttgaggatgtgacgtcatcaaatttctaaatcgcaaaccagaagagtgaaagacttttgcttggtaccatattgtagacgttcataaactatgtttttctaaaaaattattcgatgtttcctcgaaaagtttagaaattacgatggttttaagtttttttcaaaagttttcttgaattcttaaaaaagaagaaaagcactctaattttgaaaatattgaagatttctgaaaagtccaaaggtagaattattacaaagtagctaaagtttctttcaagtcattcgattcaaagaaataggtcacagaattttataccgacctttttaaagatttggaacctatgctGTAAAATAAGCGAAAGGATCTTCTAAAGCCAATAGCTTCACGCAATTTAAATGTTGCTCCAAATTTGGTGAACGTGATTTGTTGATCAGCGAAGAAGCTTAACAAAGTTTTCTTGTTTTaggtgctgtttatatgcgcagggccagccctcctagaagggagggctggattttattttaggatcaagcctcttggttgcgtttatataggaaagtaccagccctcctctcatacgaaaaagaatttttaagagattaaaccgcaaggtgaggtctgcagggggatagccctcctccatataaacagcacttTATTCTATAAGTTATCCCAAATACCGCCAGGTAGGAGCAGCgagcagtaacctatactggggttcaattttttataaatattttcaaaattgcataatgggttacggattgctgatttgaaaccaagacgaaacggcctagcagaagacatacgatATTGTTTTTGGGCTTAACGTGATCAACGATATTCTCTCAAAGGCCACTTGCCGAGTAATTAGCAAAATTCTCACTTTCCCAAAAGGCGTCCACATATGCTAAAgaaacaaaaattttgctagaattcccaatgagcaaaccccctttactgagcccaaaatctcaatttcaaagctctttgattgatgccggtttgataatgctttgataagtaatacaaactttacgtctaaaagcgttATATATATACATTTAGTTTGCAGCATTGATGTTTTTGTAATAAGGATTTCAATATAGCCTTTATTTCGCGTTTCTTTTTACTTCATTATTTTAAAgtgaatatgataagaaaatttttatggtctaatcttatgcattaaacattcctgatcacg

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0016058 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for scaffold19.g184.t1 in Aurelia aurita.

InterPro

InterPro term	Type	Description	Source
IPR027080 all species →	Family	Protein Unc-13	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10480 all species →	PROTEIN UNC-13 HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005516 all species →	Molecular Function	calmodulin binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007268 all species →	Biological Process	chemical synaptic transmission	Interproscan
GO:0007528 all species →	Biological Process	neuromuscular junction development	Interproscan
GO:0016081 all species →	Biological Process	synaptic vesicle docking	Interproscan
GO:0016082 all species →	Biological Process	synaptic vesicle priming	Interproscan
GO:0016188 all species →	Biological Process	synaptic vesicle maturation	Interproscan
GO:0017075 all species →	Molecular Function	syntaxin-1 binding	Interproscan
GO:0019992 all species →	Molecular Function	diacylglycerol binding	Interproscan
GO:0030672 all species →	Cellular Component	synaptic vesicle membrane	Interproscan
GO:0031594 all species →	Cellular Component	neuromuscular junction	Interproscan
GO:0035249 all species →	Biological Process	synaptic transmission, glutamatergic	Interproscan
GO:0042734 all species →	Cellular Component	presynaptic membrane	Interproscan
GO:0043195 all species →	Cellular Component	terminal bouton	Interproscan
GO:0061789 all species →	Biological Process	dense core granule priming	Interproscan
GO:0098831 all species →	Cellular Component	presynaptic active zone cytoplasmic component	Interproscan
GO:0099525 all species →	Biological Process	presynaptic dense core vesicle exocytosis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold19.g184.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of scaffold19.g184.t1 across 22 RNA-seq samples of Aurelia aurita. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

22Samples

22TPM > 0

19Conditions

78.8Max TPM

22.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
complete polyp	3	3	21.37	27.42
polyp not induced	2	2	12.19	19.78
polyp endoderm from body column	1	1	0.42	0.42
jellyfish bell edge	1	1	14.27	14.27
strobila non-segmented part	1	1	46.09	46.09
polyp 12h induction with 5M2MI +20C	1	1	34.07	34.07
polyp 24h induction with 5M2MI	1	1	4.49	4.49
strobila segments	1	1	78.78	78.78
strobila heads	1	1	63.48	63.48
polyp 24h induction with 5M2MI +20C	1	1	2.04	2.04
jellyfish ropalia	1	1	1.88	1.88
polyp head region	1	1	2.39	2.39
polyp 20h induction with 5M2MI +20C	1	1	17.28	17.28
complete strobila	1	1	33.26	33.26
13 jellyfish ropalia	1	1	8.32	8.32
complete juvenile jellyfish	1	1	13.70	13.70
polyp ectoderm from body column	1	1	21.42	21.42
jellyfish bell edge without ropalia	1	1	42.61	42.61
3 juvenile jellyfish (~7mm in diameter)	1	1	13.61	13.61

Per sample · hover a bar for the full sample record

Show the sample table (22 samples)

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR7992487	complete polyp	complete polyp	polyp	not recorded	SRP164891	27.42
SRR7992484	complete polyp	complete polyp	polyp	not recorded	SRP164891	19.82
SRR7992486	complete polyp	complete polyp	polyp	not recorded	SRP164891	16.86
SRR8090261	polyp not induced	polyp not induced	polyp	not recorded	SRP164891	19.78
SRR8090262	polyp not induced	polyp not induced	polyp	not recorded	SRP164891	4.59
SRR7992468	polyp endoderm from body column	polyp endoderm from body column	polyp	not recorded	SRP164891	0.42
SRR8090258	jellyfish bell edge	jellyfish bell edge	jellyfish	not recorded	SRP164891	14.27
SRR8090265	strobila non-segmented part	strobila non-segmented part	strobila	not recorded	SRP164891	46.09
SRR8090264	polyp 12h induction with 5M2MI +20C	polyp 12h induction with 5M2MI +20C	polyp	not recorded	SRP164891	34.07
SRR8090263	polyp 24h induction with 5M2MI	polyp 24h induction with 5M2MI	polyp	not recorded	SRP164891	4.49
SRR8090260	strobila segments	strobila segments	strobila	not recorded	SRP164891	78.78
SRR8090259	strobila heads	strobila heads	strobila	not recorded	SRP164891	63.48
SRR8090256	polyp 24h induction with 5M2MI +20C	polyp 24h induction with 5M2MI +20C	polyp	not recorded	SRP164891	2.04
SRR8090257	jellyfish ropalia	jellyfish ropalia	jellyfish	not recorded	SRP164891	1.88
SRR7992469	polyp head region	polyp head region	polyp	not recorded	SRP164891	2.39
SRR8090255	polyp 20h induction with 5M2MI +20C	polyp 20h induction with 5M2MI +20C	polyp	not recorded	SRP164891	17.28
SRR7992485	complete strobila	complete strobila	strobila	not recorded	SRP164891	33.26
SRR7992483	13 jellyfish ropalia	13 jellyfish ropalia	juvenile jellyfish	not recorded	SRP164891	8.32
SRR7992482	complete juvenile jellyfish	complete juvenile jellyfish	juvenile jellyfish	not recorded	SRP164891	13.70
SRR7992481	polyp ectoderm from body column	polyp ectoderm from body column	polyp	not recorded	SRP164891	21.42
SRR7992480	jellyfish bell edge without ropalia	jellyfish bell edge without ropalia	juvenile jellyfish	not recorded	SRP164891	42.61
SRR8090266	3 juvenile jellyfish (~7mm in diameter)	3 juvenile jellyfish (~7mm in diameter)	jellyfish	not recorded	SRP164891	13.61

Source: CnidoSite RNA-seq expression matrices (AAURI1_TPM, StringTie quantification over 22 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

Co-expression network

Genes whose expression across the transcriptome samples of Aurelia aurita tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

Direction	Partners	Most correlated partner	PCC
Positively correlated	0	not in this network	-
Negatively correlated	0	not in this network	-

This gene has no edge at all in the Aurelia aurita network, in either direction — it is not one of the genes the network was built from (the network covers genes with enough expression variation across the transcriptome samples). The counts above are a property of the network, not a failed lookup.

Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Aurelia aurita, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	ready	open →
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →