Gene detail

Detailed information of scaffold194.g27.t2 in Morbakka virulenta

Genomic Location: scaffold194:833799...927503
NR annotation: XP_048586501.1, nuclear pore complex protein Nup133 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

scaffold194.g27.t2

ATGATAATGAGTTCTAAATCATTACTTTTTGGATCACCTAAAACAAGGAGCCCCTTTACGTTTGGAAAATCACGACAATATGAACATGTACTAACAGGAAAAGGCTCACCACAAGTTGAAAAGGATCTGCCAAATGGAATTACACCTTACAATGCCAGTTTACCAGTGCAAGTAGTGGAAGCCCTTGCATTCACAGATGCAGGACATGTGAGTTGCAAACTGGATTCCTCTGGGTGGGCATGGTTGATAAAAAATAAGAAGTTATATGTATGGAAGTATACACCATCTACTATGAAGCCCTACGGATGCATTCTTATCACAACAAGCAACGATGTTATTCTTCTACGACCCACGCAGTCAACAATTACTTGTAAGCAGTTTTATCTGCCAGTTGGAATGTTATCTGGAATTAGCAGGAGGGTTTCAACCTTTTTGTTGCGATCCGCAGCACAACCTGAAATTTCACATTTACCGAAAATGTCATGTTGCAATACAGTAATAACAGAAGATGAAAACACAAAAACCTTCTATGTCTGGGCTTCCGGATCATTGAACAAATGGGAACTGAGTTATACCACCTACTTATCAGAAAAATTATTATTTCAAGCTGATGTAATTCCATTGCTTAAGGAAGGTGCTGCTAATTTACTGGAGATCGATCAGGATACCATTGCTAAAATAGAACCCTTGGATATTTGTTCAACAGGGACTGGAGTAGCTTTGCTTGCTGGTGTTGTTATCCCCCAGAACACAGGAATAAAATTAATTGTTATATGTGGTACGCTTGAATGTGGTAGAAACGATGTTGGAAATACTATGTCATCCTTGGCATGCATAAAGCCAGAGTTATACTTTCAGTCAGAAGATGACATACCAGAATTAAAACTTATTATACCAAGTGGACTTTATAGAGGTTTTGTCTACAAATCAGATGTTATCGCATCAGTACCAGTTGCAAAAGGTGATGATGCTTGTGTCACAGTATATCCACCAGGAAAAGATATTATTGGTGCAGGTTTCACTGGACAATTACCAATTTTCCTTTCAAGAAGAAATGGATTTATTACGTTGAATATATCAACACAAGACTTGTCATTAAGTACTTCACTTCTGAATGCAACTCAGTCGTCAACAGCTATCAACGATGTTGAAATGGTAAAAGTCGACCCAACAAAAGCCTTAAATTTTGGTGGTTATGATGGAGACGATGATTTAAATGTTCTTGCTCAAGGCTTTTGTGTGTACGCAGAAGGAAACGTGtttgAATCACAAGAAATGGTTTCTGAGCTTACTTTGGGATATGCTGTGGATAAGATTGTTGTGAAAATGAGTCGAGATATTGTTGACAGTATTCCAGCATCCGACCCAAGATGGGCTAACAGTGAAGACCCCCCAGttgtcttgcgaaagatgggtgatgatgaaaggcccctcgttttgagtctcttatggggagctaaatcgtcgaaaagttccttttgtttgcaggaaaacgagactggcgaaataatgtttgAATCACAAGAAATGGTTTCTGAGCTTACTTTGGGATATGCTGTGGATAAGATTGTTGTGAAAATGAGTCGAGATATTGTTGACAGTATTCCAGCATCCGACCCAAGATGGGCTAACAGTGAAGACCCCCCAGGAGGAACATTACGAGGGCTGTCTCCTTCAGTAATCATTATGAATCAGCTGCAAGATAAAGAGAAATACCACGCTATGTTTATCACCTACTTACAAGACGTAGACCTCTGGGATAAGGCGACGAAACATTGTATTTCTGGCAAAGAATATTCCACCAAATTATTACTTCTGCAAAATGCTGAAAAAATTCGAGCTTCTATGATTTTGCAGGAGGTTTATCAAAGTTACCCAGAGCTTATGGACCGTGCCTTTTCTAATGTTGTTTCTAATATTGAAGAAGATAGTTTTTCCAGCCCAGAGCTCACAAATCAAGACAGGGTGTTTCAAAAGGTAAGCAAAATAGAACGACTGTTTGCTGCCATTTTTGCCATTCAAGCAGACTCGTTAAAAAGCGTTGACTCCGTCAAAGAGAAAATTGCAACCATTATGGCAGTCAATACCATTTTTACGGAGCCTCTTAAAGAATCCCTCCTCATTAGGAAAACATGGTCTAAAATCCTTGAAAATCACACAACAGAAGGCACTTCCTTTTATATGTGGACAGCTACTGGTGGAAAAGATGGAATGAGGACAATCCTTCGCGATCAGGTTTTTTTAACTGTGGAGACGTATCTTCCCAATGCTGATAATACCAAGACTGGGTCTCTACTTGCGCAGCAGGCCTACGATTTAGCAGACATCCTTTTAGATGGTTATCAGTCGGAACTGCAATACAAAAGAGATATGTCGCTGGAAGAAGCTTTTACAAGTGATAGAAAACGAATCCTAATACCATTAGTACGTGAAGGCTACTATGAGATCAGTTTGGAATTAGCCGAAAAATATAAAGATTTTTCAACATTGATTGCACTTTGTGAGCAACGAAATGACCGTGAAAAAATGGATCAATACAAGTCAACCTTTGCTGATGTGGGGTTCCTGGATCACCTATACCAGTGGTATATCGATAAAGGTGACTGGCAAAAATTGTTAAACCAGGAGCCGTCAAACAGTTTAGATAACTTTCTGTTGTCACATCACAAATTGCGGTGGCTAAATGATATTGGAAACAGGGAATTCCATCAGGCTTCGTCAACACTTTTCGAACTTGCACGTGAAGAGGAAGACATCTTAAGCAGGAAAAAGACAATGCTTTCAATTAATGCAAGAAACTCTCCCAGAAGAAATTATTAG

Transcript

scaffold194.g27.t2

CGAAGCATCCAAGAAGATGATCACATGGTGAATTGTGATGAACAAGCAATAAAAGTTAGTGAAAACTGTTAAAGTAATACAAAATTGAATGATAATGAGTTCTAAATCATTACTTTTTGGATCACCTAAAACAAGGAGCCCCTTTACGTTTGGAAAATCACGACAATATGAACATGTACTAACAGGAAAAGGCTCACCACAAGTTGAAAAGGATCTGCCAAATGGAATTACACCTTACAATGCCAGTTTACCAGTGCAAGTAGTGGAAGCCCTTGCATTCACAGATGCAGGACATGTGAGTTGCAAACTGGATTCCTCTGGGTGGGCATGGTTGATAAAAAATAAGAAGTTATATGTATGGAAGTATACACCATCTACTATGAAGCCCTACGGATGCATTCTTATCACAACAAGCAACGATGTTATTCTTCTACGACCCACGCAGTCAACAATTACTTGTAAGCAGTTTTATCTGCCAGTTGGAATGTTATCTGGAATTAGCAGGAGGGTTTCAACCTTTTTGTTGCGATCCGCAGCACAACCTGAAATTTCACATTTACCGAAAATGTCATGTTGCAATACAGTAATAACAGAAGATGAAAACACAAAAACCTTCTATGTCTGGGCTTCCGGATCATTGAACAAATGGGAACTGAGTTATACCACCTACTTATCAGAAAAATTATTATTTCAAGCTGATGTAATTCCATTGCTTAAGGAAGGTGCTGCTAATTTACTGGAGATCGATCAGGATACCATTGCTAAAATAGAACCCTTGGATATTTGTTCAACAGGGACTGGAGTAGCTTTGCTTGCTGGTGTTGTTATCCCCCAGAACACAGGAATAAAATTAATTGTTATATGTGGTACGCTTGAATGTGGTAGAAACGATGTTGGAAATACTATGTCATCCTTGGCATGCATAAAGCCAGAGTTATACTTTCAGTCAGAAGATGACATACCAGAATTAAAACTTATTATACCAAGTGGACTTTATAGAGGTTTTGTCTACAAATCAGATGTTATCGCATCAGTACCAGTTGCAAAAGGTGATGATGCTTGTGTCACAGTATATCCACCAGGAAAAGATATTATTGGTGCAGGTTTCACTGGACAATTACCAATTTTCCTTTCAAGAAGAAATGGATTTATTACGTTGAATATATCAACACAAGACTTGTCATTAAGTACTTCACTTCTGAATGCAACTCAGTCGTCAACAGCTATCAACGATGTTGAAATGGTAAAAGTCGACCCAACAAAAGCCTTAAATTTTGGTGGTTATGATGGAGACGATGATTTAAATGTTCTTGCTCAAGGCTTTTGTGTGTACGCAGAAGGAAACGTGtttgAATCACAAGAAATGGTTTCTGAGCTTACTTTGGGATATGCTGTGGATAAGATTGTTGTGAAAATGAGTCGAGATATTGTTGACAGTATTCCAGCATCCGACCCAAGATGGGCTAACAGTGAAGACCCCCCAGttgtcttgcgaaagatgggtgatgatgaaaggcccctcgttttgagtctcttatggggagctaaatcgtcgaaaagttccttttgtttgcaggaaaacgagactggcgaaataatgtttgAATCACAAGAAATGGTTTCTGAGCTTACTTTGGGATATGCTGTGGATAAGATTGTTGTGAAAATGAGTCGAGATATTGTTGACAGTATTCCAGCATCCGACCCAAGATGGGCTAACAGTGAAGACCCCCCAGGAGGAACATTACGAGGGCTGTCTCCTTCAGTAATCATTATGAATCAGCTGCAAGATAAAGAGAAATACCACGCTATGTTTATCACCTACTTACAAGACGTAGACCTCTGGGATAAGGCGACGAAACATTGTATTTCTGGCAAAGAATATTCCACCAAATTATTACTTCTGCAAAATGCTGAAAAAATTCGAGCTTCTATGATTTTGCAGGAGGTTTATCAAAGTTACCCAGAGCTTATGGACCGTGCCTTTTCTAATGTTGTTTCTAATATTGAAGAAGATAGTTTTTCCAGCCCAGAGCTCACAAATCAAGACAGGGTGTTTCAAAAGGTAAGCAAAATAGAACGACTGTTTGCTGCCATTTTTGCCATTCAAGCAGACTCGTTAAAAAGCGTTGACTCCGTCAAAGAGAAAATTGCAACCATTATGGCAGTCAATACCATTTTTACGGAGCCTCTTAAAGAATCCCTCCTCATTAGGAAAACATGGTCTAAAATCCTTGAAAATCACACAACAGAAGGCACTTCCTTTTATATGTGGACAGCTACTGGTGGAAAAGATGGAATGAGGACAATCCTTCGCGATCAGGTTTTTTTAACTGTGGAGACGTATCTTCCCAATGCTGATAATACCAAGACTGGGTCTCTACTTGCGCAGCAGGCCTACGATTTAGCAGACATCCTTTTAGATGGTTATCAGTCGGAACTGCAATACAAAAGAGATATGTCGCTGGAAGAAGCTTTTACAAGTGATAGAAAACGAATCCTAATACCATTAGTACGTGAAGGCTACTATGAGATCAGTTTGGAATTAGCCGAAAAATATAAAGATTTTTCAACATTGATTGCACTTTGTGAGCAACGAAATGACCGTGAAAAAATGGATCAATACAAGTCAACCTTTGCTGATGTGGGGTTCCTGGATCACCTATACCAGTGGTATATCGATAAAGGTGACTGGCAAAAATTGTTAAACCAGGAGCCGTCAAACAGTTTAGATAACTTTCTGTTGTCACATCACAAATTGCGGTGGCTAAATGATATTGGAAACAGGGAATTCCATCAGGCTTCGTCAACACTTTTCGAACTTGCACGTGAAGAGGAAGACATCTTAAGCAGGAAAAAGACAATGCTTTCAATTAATGCAAGAAACTCTCCCAGAAGAAATTATTAGTAAAGCAGCACTTGATACAAAGAATATGCCCCCGTTGTCTGCAGAGAAACTTATTGAGCTATACGTGGGAGAAGCTAATACAGCACTTGATGTTTTTGATTTCAGAAGAGCAGTCGAATTAGTTCAGTATTTAGATGAGAACATTCAATTAGAAACACGGATAAAGATCTGGTCAATAGCTGTCTTACAGGATCATTGCTCGTGATGCATTGACTGTGATACCAACAATTGCATCGTTGCTGGCTTCACCAATACTGATGGAGAAGGGCTTATCAGCAAACACTAACTTTCATTACTTATTAAAAGCATTCTATGAACGTTATGAATTATAGTCTTAAGTTTCTAAATTCATAACAACAGAACGTTATTTTAACATGTGTTCCTCTACCCTTTCTGAAAATTCCTGCTGTTCAACCAACACTGACAGAGAAGGGCTTGTCAACAAACACCAACTTTCATTACTTATTAAAAGCATTCTATGAAC

Protein

Uniprot

Uniprot term	Description
Q9VCW3	Nuclear pore complex protein Nup133 OS=Drosophila melanogaster OX=7227 GN=Nup133 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03177	Nucleoporin_C	Non-repetitive/WGA-negative nucleoporin C-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR037624	Family	Nuclear pore complex protein Nup133-like	Interproscan
IPR007187	Domain	Nucleoporin, Nup133/Nup155-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13405	NUCLEAR PORE COMPLEX PROTEIN NUP133	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000972	Biological Process	transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0016973	Biological Process	poly(A)+ mRNA export from nucleus	Interproscan
GO:0017056	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0031080	Cellular Component	nuclear pore outer ring	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14300	NUP133; nuclear pore complex protein Nup133	-	Chromosome and associated proteins	ko03036	deepkoala