Gene detail

Detailed information of scaffold1978.g1.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold1978:2176...26734
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold1978.g1.t2

gttgcatgttgcatcaaaactttaatttggaaccgaggctgtgaaaaattttctttcaacttcaactggaagcaagttggcacgttgtgtttggtcgtgtgtggcgtcctactgcagttcagttttttggctttgactttgaagacttgactgcagctgctttcgaagatggcagccacaacagatgatccaagaaatcgagtgcgttgcaaatactttttacatggagtgtgcaaaaaggaggaatgtccattctcacatgaaattaaagacaagccatcaatggtatgcacattttataaaaagggatcatgttcatatggaaaacaatgcagatatgaccatgttaaaccagcttatgcaaagaagcaggtggaaaaagtattatacaaagtgccagatgctgttaaacaaacagaaaaaggaacaaaaactggaccttctgattggtggattgtcaatgctcctgtcttccaaccaggtcagaagaatcattcaactttaagtggtcagcacgaagaggaagaacaggatgagatttcagaagtagaaacggcaatcgcagaacttgaaataaacgataaagactcggaagaattaactgctgaagagatctcacaattaatgtgtccatttgctgcagtccgggactgtccttatggtgaaaactgtcattatgttcatggtcttcgatgtgatatctgtgatcgggaatgcttgaatcctttagatctcgaacaacagtcagagcacagagcaaaatgtttagaaagtcatgaacgtgatatggaatattcattcgctattcaaaggagtgaaggcgtaacttgctgtatttgtctagatctagttttggaacgagaaactgatagcgaaagaagatttggaatcttagaaagctgtaatcattcgttttgtttggaatgcattcgaaaatggcgcaagtcatctggtggtcgaaaggaggtcaaagcatgtcctatttgtagaacgagttctggattcgttataccgagtgaaatatgggttgaagatccagcagataaagaaattttgattagaagatatacagatgccctcagcacgaaagattgcaaatattttgacaaaggtcaaggagactgcccatttggaacaagttgcttctatagacatgcatttgctgatggctcacttgaaaaaacagaaaaaccaaaaatgagattttgtgaagattcagatgggaatgcaaaaacagtaagaagtcaaaggctgtgggattttatcgaagagcgagatatgcaatcagaatatccataaatgaatcatgaagatttcaagaacttgccttttatttaatgttttcatcaattggaacccataacaaaaagtcagtataataacataccgagtgactcaaaaacatttcacgagctagatcacgcctggcatccagaatgcaaatattatgaatgcaaacaagcatgtagctgaaaagctcgactatcttttaaagggagtacaaagaccagcaacctttgccatcgtttgtctttgtttttgtggattctttacattcagttattatggaagctgtgcagagcaagtggctgaattcgtgcaaaacatgccggtcttcgtaatctcttcaagatgttgcttggtcagtttacgctgtacctacccttcgaaaaaccggtctcaaaaacatggtcattcattcatttcttggactttcccaaccatttccagtccatttttttggaaaatgtgaaaaaagccgaattgtagattttcttaggagaagagcacgaaattggaataaggagcagagactattcattttgcaaacactagatttcccatatttcagcttattcgaaaaatgttttattcaaaaagtattttattcaaaaacatctttttcctatttttactgtatcgtgtactgttttgtgtcgcctttccagcgtgttatttgtgaaataagtactttttcgatagagcacacagaaaaaagggagtgaaaagtaaaaacggacgaaagaagagagaggaaagagacaaataacacgtggagaggtgaaaaaaacaacactgggaaaatattattttgaatactttctgaataaaacatttttcgaatatactgtaatattggctccctgttaatgtttcacgaaatgttgactggaagaaggaagacgaatttttcactctatatgagaaatttaggattcgaaattttctttgaatctggtttctcggacagcagtcaatgcttaaatgaccatacagtatctcaaaagataaccaagcctttcagctgaacggtgaagcaaaacacttgccaatacttcttgatttctgtgagctacgtagacttgccccaagtctgttttctcactgtaatgctaccgggtgccccaaaaaaaagtactcccgtttgaaaaatcaccaacatttgatttcacggccgatcttcaattttcttttttgccaagtagatcaaggaccaaactattttcgcagacattgctgatcttgtaattggtgtaaaattaacaaatttatctcctntag

Transcript

scaffold1978.g1.t2

GTTGCATGTTGCATCAAAACTTTAATTTGGAACCGAGGCTGTGAAAAATTTTCTTTCAACTTCAACTGGAAGCAAGTTGGCACGTTGTGTTTGGTCGTGTGTGGCGTCCTACTGCAGTTCAGTTTTTTGGCTTTGACTTTGAAGACTTGACTGCAGCTGCTTTCGAAGATGGCAGCCACAACAGATGATCCAAGAAATCGAGTGCGTTGCAAATACTTTTTACATGGAGTGTGCAAAAAGGAGGAATGTCCATTCTCACATGAAATTAAAGACAAGCCATCAATGGTATGCACATTTTATAAAAAGGGATCATGTTCATATGGAAAACAATGCAGATATGACCATGTTAAACCAGCTTATGCAAAGAAGCAGGTGGAAAAAGTATTATACAAAGTGCCAGATGCTGTTAAACAAACAGAAAAAGGAACAAAAACTGGACCTTCTGATTGGTGGATTGTCAATGCTCCTGTCTTCCAACCAGGTCAGAAGAATCATTCAACTTTAAGTGGTCAGCACGAAGAGGAAGAACAGGATGAGATTTCAGAAGTAGAAACGGCAATCGCAGAACTTGAAATAAACGATAAAGACTCGGAAGAATTAACTGCTGAAGAGATCTCACAATTAATGTGTCCATTTGCTGCAGTCCGGGACTGTCCTTATGGTGAAAACTGTCATTATGTTCATGGTCTTCGATGTGATATCTGTGATCGGGAATGCTTGAATCCTTTAGATCTCGAACAACAGTCAGAGCACAGAGCAAAATGTTTAGAAAGTCATGAACGTGATATGGAATATTCATTCGCTATTCAAAGGAGTGAAGGCGTAACTTGCTGTATTTGTCTAGATCTAGTTTTGGAACGAGAAACTGATAGCGAAAGAAGATTTGGAATCTTAGAAAGCTGTAATCATTCGTTTTGTTTGGAATGCATTCGAAAATGGCGCAAGTCATCTGGTGGTCGAAAGGAGGTCAAAGCATGTCCTATTTGTAGAACGAGTTCTGGATTCGTTATACCGAGTGAAATATGGGTTGAAGATCCAGCAGATAAAGAAATTTTGATTAGAAGATATACAGATGCCCTCAGCACGAAAGATTGCAAATATTTTGACAAAGGTCAAGGAGACTGCCCATTTGGAACAAGTTGCTTCTATAGACATGCATTTGCTGATGGCTCACTTGAAAAAACAGAAAAACCAAAAATGAGATTTTGTGAAGATTCAGATGGGAATGCAAAAACAGTAAGAAGTCAAAGGCTGTGGGATTTTATCGAAGAGCGAGATATGCAATCAGAATATCCATAAATGAATCATGAAGATTTCAAGAACTTGCCTTTTATTTAATGTTTTCATCAATTGGAACCCATAACAAAAAGTCAGTATAATAACAtaccgagtgactcaaaaacatttcacgagctagatcacgcctggcatccagaatgcaaatattatgaatgcaaacaagcatgtagctgaaaagctcgactatcttttaaagggagtacaaagaccagcaacctttgccatcgtttgtctttgtttttgtggattctttacattcagttattatggaagctgtgcagagcaagtggctgaattcgtgcaaaacatgccggtcttcgtaatctcttcaagatgttgcttggtcagtttacgctgtacctacccttcgaaaaaccggtctcaaaaacatggtcattcattcatttcttggactttcccaaccatttccagtccatttttttggaaaatgtgaaaaaagccgaattgtagattttcttaggagaagagcacgaaattggaataaggagcagagactattcattttgcaaacactagatttcccatatttcagcttattcgaaaaatgttttattcaaaaagtattttattcaaaaacatctttttcctatttttactgtatcgtgtactgttttgtgtcgcctttccagcgtgttatttgtgaaataagtactttttcgatagagcacacagaaaaaagggagtgaaaagtaaaaacggacgaaagaagagagaggaaagagacaaataacacgtggagaggtgaaaaaaacaacactgggaaaatattattttgaatactttctgaataaaacatttttcgaatatactgtaatattggctccctgtTAATGtttcacgaaatgttgactggaagaaggaagacgaatttttcactctatatgagaaatttaggattcgaaattttctttgaatctggtttctcggacagcagtcaatgcttaaatgaccatacagtatctcaaaagataaccaagcctttcagctgaacggtgaagcaaaacacttgccaatacttcttgatttctgtgagctacgtAGACTTGCCCCAAGTCTGTTTTCTCACTGTAATGCtaccgggtgccccaaaaaaaagtactcccgtttgaaaaatcaccaacatttgatttcacggccgatcttcaattttcttttttgccaagtagatcaaggaccaaactattttcgcagacattgctgatcttgtaattggtgtaaaattaacaaatttatctcctntAG

Protein

Gene family

Family type	Membership / link
Transcription factor family	zf-CCCH · all TF in this species
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14608 all species →	zf-CCCH_2	RNA-binding, Nab2-type zinc finger	Domain	Interproscan
PF13639 all species →	zf-RING_2	Ring finger domain	Domain	Interproscan
PF00642 all species →	zf-CCCH	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR036855 all species →	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR045072 all species →	Family	MKRN-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11224 all species →	MAKORIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15687	MKRN; E3 ubiquitin-protein ligase makorin	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.