Gene detail

Detailed information of scaffold198.g10.t1 in Morbakka virulenta

Genomic Location: scaffold198:286347...319315
NR annotation: XP_042909708.1, UBX domain-containing protein 4 [Parasteatoda tepidariorum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold198.g10.t1

CTACGGCTACAATGTTTAGTACCCCTTTTTATTCGAAAGTGGTTTGTAAGAAATCAGTACAACGATGGCCAAAAATTTAACATTCCCTTCAGCACTTTGCGCTGATGAAAAAACTGAAAAAGTTTTAGCCTCGTTATGATATTATGATATTTTTTTTTTCAATGTCCTTTTTGTGCCGATTTTCAGCCTGGGCCACGACAGTCACATTGAAGTGAAGTTGTTTCTGAAATATTGTTATCTCATTTTTACTTTGTGACAGGATTTTCATCACCGTGATACAGTAGGAATAATCAGATGAGTGAATTCCACGATTATTTTGACAGGAGCATTACCTTTTGTTTCTTTTTGTATTTGTTTAATTTTTGATGTAGTGGCCGGAGTACAAAATTACCCACATAACCTTGAAGGCCTTTGTTTCCTGTTGCAACTGATTACATTTTCATTGGCCACTATTACCAGTTATATCGCTCAAATCACAGACCATTTAAAATTATAAATAAATCCCTAAGATAACGCACAGAAGTAATGGAGTGGTACGAGCATGGTGTAGCAGCGGCAATTAAAGAAGCTTTTAGTCAAAGTAAAATTTTCCTTGTTTACCTAGAAGGTGATAATGAAGATTCCAAATATATGGGAAAAACATGGGATGATGAAGAGGTTCAGCGATGTGTTAAAGAGAGCTGTGTTTCAGTTAAGGTTCATTCAGACAGGGATGATGGGAAGCAGTTTGCAGCATTTTATCCTGTGCTTCTTGTACCAGCAACATATTTAATTAATTCAAGTGGAGTTCCAGTTGATATTATACCTGGCTTTGTTGAGCCAGTAAAATTTGTAGAAAGACTCAAAGATACATTTCAGAAAATAGAAACTGGTAATACCAATACGTCAGAAAAACAGCCTGAAGATAATAGAACATCAGAAGATACAGATGTCTCCTCCGTTGAAGATAAAGCAAGGGAGAAAACACAACTGGATAATTCGTCGGTATCTGAATTGACTCCCGTACAACCTCCTGATCAGCCTCAATCAGCTTCAACAACCGTGGGAGAGGATAGTCTATCTGTGCCAGCAGACCAAAATACCGTACAAAGTCTTGAAGAGAGACGTAAAAGGGCAGAACAGCTTATTCAAGCCACCAGAGAAAAAAGGCTGAAAGAAGAAGAGCAGAAAGAAAAGGAAAAGGAGTTTAAACGAAGACGAGAAGGCCAGGAGTTAACGAAAGCACAGCGCAGCCAAGCAGAGAGGCAAGCTACTGACCTCGCTGCTGAAATCGCAAAGAAAAAAGCAGAAGAAAGGGCAGCAAGAGAAGGTGTGAGGGAACAAATAAGAAGAGATCGAGCAGAGAAATCCGCAAAATTCAGTGCAGAAGAAGCAGCAAGGGCCAAACAAAACCAAGAAAAGAAAGAGAAAAAAGAAGGTACAACTGTCCAGTCTCCGTCACTGACACAAGAGAGTAGTACCTGTCAAATTCAGTTTCGATACCCAGATGGTGCTAATCGTATACGAACGTTTGAACCAGACGCATGCCTTACATATGTCGCAGAAGAGGCAGCTAAGGAATCCCAAGGGAAGTACACACAAGTACGCCTGGCGTCAATTTATCCTAAACGTGAATTTACAAATGAAGAATTATCAAAGACAGTCAGAGAGTTGGGACTGATGCCGAGAGCTGCCTTGATTGTTTTACCTGGTTCTGGAAACTCTAACCAAAAGGTGACGAATACAGGAACTTCGATTGTGGACATATTTTGGATGGTGCTTGCCCCAATTCTTTGGCTATTGTCGCTGTTGAAAGCAATGTTTTCAGGAGATAACGACAATGATACTAAAAATCAGCAGACGCCGGTGACAACCAAACCAGCTCATGAACCTAGGAGAACTCAGTCGTCTTCCAGCGCGTCAAGGGATACTCCCGAATTCAAAGCATATAGACGACATGGCAATATTCATAAGTTTAGACAGGAAGATGAGAGTGAAGACGATGATGATGAGAATAAAACGTGGAATGGTAATTCAACACAGCAGCTTTGATGTTAGAAAGAAAACTATATGAACAGCCCTAAAATACAATTGTCAGTATTCT

Protein

Uniprot

Gene family

Uniprot term	Description
P34631	UBX domain-containing protein 4 OS=Caenorhabditis elegans OX=6239 GN=ubxn-4 PE=1 SV=1
Q9ZW74	Plant UBX domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=PUX11 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	ULD\|UFD\|UBX

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00789	UBX	UBX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR001012	Domain	UBX domain	Interproscan
IPR036249	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46424	UBX DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0030433	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24348	UBXN1_4; UBX domain-containing protein 1/4	-	Protein processing in endoplasmic reticulum	ko04141	deepkoala