Gene detail

Detailed information of scaffold2.g147.t3 in Aurelia aurita

Genomic Location: scaffold2:1627474...1660842
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI1 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold2.g147.t3

ctgactcaaaaacaaaaatttgaaagagcaagcaaagagcagcagcagaaaaagaaaatgtaaagacaagaaaagagcgtcctgaatttggttactggtactctgaaaccatggagaaacagaagcatcacaagaatacttcaaagctgtttcccgattgcaatgccagctgtatgggagtaaattcagatggtaccaaagctcttctagcaggacgcagaggttttatactcataaacttggatgaccccaacctaccatacaaaagaagcactcataatcataaatgggaacccagtgttttggaatggaatccttcttatcacagcagtgacctgtttgcaactgtattgaatcaaaaagtagaaatatggagctgcaaagaacttggagactcgccaaggcatgtacttggtagacatactcgcattgtcagcgatcttaactggaagacatcagacaccgaagatctttcaagaatattgcttacatgttccatggatacttacatttacttatgggacctcagggaacacaaacgacctgtgcagacattcacaacagttgctggggcatctcaagtaaaatggaacaaaaagagtgaattcctatttgccagtgcacatgatggtgatgttagagtatgggacacacgtaaaggaaatattccgttggcatacatagcagctcatttatcaaagatccatggcttggactggtctcctggaaaagagagttgctttgttacggccagcaatgataacactgtcaaaaagcagtatttcatcataatcaaatttaatacgatgtatctcttttccacagctgggccatctcaagtaaaatggaacaaaaagagtgaatttctatttgccagtgcacatgatggtgatgttagagtatgggacacacgtaaaggaaatattccgttggcatacatagcagctcatttatcaaagatccatggcttggactggtctcctgggaaagagagttgctttgttacggccagcaatgataacactgtcaaattttggaatatcaattcaccaaagcaagccaactcaagtctcagctctggatcacctgtgtggcgggcaagatatacgccatttggtgatggtctcttgacagttgctgtaccatctatgaggcgtgatgaaaacaatttgcatctatggaattcctatgacctttcatctcctgtccatactttcagtggccatcaagacgtaattcttgagttccaatggaggtctcgcgagttaagagaaaaagcgtcatatgtttttctctttcagcttgatgctaagcaaagagtctgtggagtttcagcaaaaattggacctcatctggtcaaagtgaacatatcttttccaccagcttatccaaataatgttccaccaaatttcaaattctcaaaagacacgaatgtggaccatgatttaagatcaaggctgatgaaggcactgctagaaactgcgaattgccatgttaaatacaacagaacatgccttgaaccatgtgtgcgacaactagtccagcaaatcgaagaactgtcgatgagagatgaactcttcgaaacaattctctcgccacctccatcattgccatctttctacccaagacggggagccacaaattcatatggtagctaccaagatccggctgtaccatttcctcgattttctggagctagattttgtggagttgacaaacttgtggtgttcacaagaccagcaaagtttactcaagttaacagcgaaggaacagaaattactctcaggtcaatgtctgcactgcctgctttcatttcaaatatgacagtggaagaatcgttcgatacgtctgtatttgagaaagacgtgtcgggtggtggcgttagaaggcgagcgtcgggagttgttgtgatttcggatgtctctggacttttaccaatccaaaaatcactaggacgagaatatgttgttggtggtaaagatgtaaacgatgtaaacgaaatttgcaaaatcaactcaaatgctgcaaaattacttggacgagcagatttagtgagaacatggtcacttgtttctatggtgatggagaaatgtcttgggcctaatgacaactatgacgaaagcccctgggcgtttcatccatttggaaggggactaattgaatcattattcagttactacatgaagatacgtgatgttcaaacattggctctactcagctgtgtgttatcaaagcaacagttaccaaataatttggccttatcgcctgttaaagcaaagaagggctataccattggttctaataattacccagaggtatcgtatacaatgaggaaaagaagaatgaattattcagacagccaatcagaagtgtcccctgattttccttatggaatataccgcacttcctctacctcatcagctgctggcagtatgtctcctcctgcatttattgtggaaagaactgaatcagttgatgaagctaaatatgaatatcgcaagaactgcagtgttggtggtaaagatgtaaacgatgtaaacgaaatttgcaaaatcaactcaaatgctgcaaaattacttggacgagcagatttagtgaggacatggtcacttgtttctatggtgatggagaaatgtcttggacctaatgacaactatgacgaaagcccctgggcgtttcatccatttggaaggggactaattgaatcattattcacttactacatgaagatacgtgatgttcaaacattggctctactcagctgtgtgttatcaaagcaacagttaccaaataatttggccttatcgcctgttaaagcaaagaagggctataccattggttctaataattacccagaggtatcgtatacaatgaggaaaataagaatgaattattcagacagccaatcacaagtgtcccctgattttccttatggaatataccgcacttcctctacgtcatcagctgctggcagtatgtctcctcctgcatttattgtggaaagaactgaatcagttgatgaagctaaatatgaatatcgcaagaactgcaggctactggacccttcaatgggaagacaatacgattgtttcaaaaaggcttatgcagatatcctgtatcgatggaatttcttaaccaaacgaaccgaagtgatgaaatatgtagaagaatcaccttcgcctcaccgtggccttgatgttcaagtaaagtgtccgaattgctctcaaacgcaacgcgaatctcagtgtgttacttgcaagtcaattatcgtcaaatgtgcagtatgcagaattggagtaagaggtttgttaagcttctgtgtcgcgtgtggccatggcgggcacaccttccacatgatggaatggtttcagaaaatggagagttgtgcaactgggtgtggttgctattgtttaaagaatggatcaatcgtgtcagacgaagaatattcgaattctggatattatagatgagaggactggtatttagaaatgatcaattttggggtctgtggggaggctagaagcttttctaccgtatgagtaaataccctaacagtccaagagctttttaggaggccatctaattgacaagtagtctgggagatcactctttgccaagaaagtagattaacttctgatatattttgtaaaatgaattgtaaatagtcagcagatgatcaaattttgtatcgaaaaaaaagttgttaaaagtattgtcttgtacctcaattttttaatctcaagttatgcaaaaacccaaaaacagaagcgtaaattccgaaggcaaccctgattatttactgtacaattcgtggttgaaaacgtagtgtagtgacgtgagaatattggcaggctaagtttgcatggtgacgatagaattttctgcaggcncttctgtgtcgcgtgtggccatggcgggcacaccttccacatgatggaatggtttcagaaaatggagagttgtgcaactgggtgtggttgctattgtttaaagaatggatcaatcgtgtcagacgaagaatattcgaattctggatattatagatgagaggactggtatttagaaatgatcaattttggggtctgtggggaggctagaagcttttctaccgtatgagtaaataccctaacagtccaagagctttttaggaggccatctaattgacaagtagtctgggagatcactctttgccaagaaagtagattaacttctgatatattttgtaaaatgaattgtaaatagtcag

Transcript

scaffold2.g147.t3

CTGACTCAAAAACAAAAATTTGaaagagcaagcaaagagcagcagcagaaaaagaaaatgtaaagacaagaaaagaGCGTCCTGAATTTGGTTACTGGTACTCTGAAACCATGGAGAAACAGAAGCATCACAAGAATACTTCAAAGCTGTTTCCCGATTGCAATGCCAGCTGTATGGGAGTAAATTCAGATGGTACCAAAGCTCTTCTAGCAGGACGCAGAGGTTTTATACTCATAAACTTGGATGACCCCAACCTACCATACAAAAGAAGCACTCATAATCATAAATGGGAACCCAGTGTTTTGGAATGGAATCCTTCTTATCACAGCAGTGACCTGTTTGCAACTGTATTGAATCAAAAAGTAGAAATATGGAGCTGCAAAGAACTTGGAGACTCGCCAAGGCATGTACTTGGTAGACATACTCGCATTGTCAGCGATCTTAACTGGAAGACATCAGACACCGAAGATCTTTCAAGAATATTGCTTACATGTTCCATGGATACTTACATTTACTTATGGGACCTCAGGGAACACAAACGACCTGTGCAGACATTCACAACAGTTGCTGGGGCATCTCAAGTAAAATGGAACAAAAAGAGTGAATTCCTATTTGCCAGTGCACATGATGGTGATGTTAGAGTATGGGACACACGTAAAGGAAATATTCCGTTGGCATACATAGCAGCTCATTTATCAAAGATCCATGGCTTGGACTGGTCTCCTGGAAAAGAGAGTTGCTTTGTTACGGCCAGCAATGATAACACTGTCAAAAAGCAGTATTTCATCATAATCAAATTTAATACGATGTATCTCTTTTCCACAGCTGGGCCATCTCAAGTAAAATGGAACAAAAAGAGTGAATTTCTATTTGCCAGTGCACATGATGGTGATGTTAGAGTATGGGACACACGTAAAGGAAATATTCCGTTGGCATACATAGCAGCTCATTTATCAAAGATCCATGGCTTGGACTGGTCTCCTGGGAAAGAGAGTTGCTTTGTTACGGCCAGCAATGATAACACTGTCAAATTTTGGAATATCAATTCACCAAAGCAAGCCAACTCAAGTCTCAGCTCTGGATCACCTGTGTGGCGGGCAAGATATACGCCATTTGGTGATGGTCTCTTGACAGTTGCTGTACCATCTATGAGGCGTGATGAAAACAATTTGCATCTATGGAATTCCTATGACCTTTCATCTCCTGTCCATACTTTCAGTGGCCATCAAGACGTAATTCTTGAGTTCCAATGGAGGTCTCGCGAGTTAAGAGAAAAAGCGTCATATGTTTTTCTCTTTCAGCTTGATGCTAAGCAAAGAGTCTGTGGAGTTTCAGCAAAAATTGGACCTCATCTGGTCAAAGTGAACATATCTTTTCCACCAGCTTATCCAAATAATGTTCCACCAAATTTCAAATTCTCAAAAGACACGAATGTGGACCATGATTTAAGATCAAGGCTGATGAAGGCACTGCTAGAAACTGCGAATTGCCATGTTAAATACAACAGAACATGCCTTGAACCATGTGTGCGACAACTAGTCCAGCAAATCGAAGAACTGTCGATGAGAGATGAACTCTTCGAAACAATTCTCTCGCCACCTCCATCATTGCCATCTTTCTACCCAAGACGGGGAGCCACAAATTCATATGGTAGCTACCAAGATCCGGCTGTACCATTTCCTCGATTTTCTGGAGCTAGATTTTGTGGAGTTGACAAACTTGTGGTGTTCACAAGACCAGCAAAGTTTACTCAAGTTAACAGCGAAGGAACAGAAATTACTCTCAGGTCAATGTCTGCACTGCCTGCTTTCATTTCAAATATGACAGTGGAAGAATCGTTCGATACGTCTGTATTTGAGAAAGACGTGTCGGGTGGTGGCGTTAGAAGGCGAGCGTCGGGAGTTGTTGTGATTTCGGATGTCTCTGGACTTTTACCAATCCAAAAATCACTAGGACGAGAATATGTTGTTGGTGGTAAAGATGTAAACGATGTAAACGAAATTTGCAAAATCAACTCAAATGCTGCAAAATTACTTGGACGAGCAGATTTAGTGAGAACATGGTCACTTGTTTCTATGGTGATGGAGAAATGTCTTGGGCCTAATGACAACTATGACGAAAGCCCCTGGGCGTTTCATCCATTTGGAAGGGGACTAATTGAATCATTATTCAGTTACTACATGAAGATACGTGATGTTCAAACATTGGCTCTACTCAGCTGTGTGTTATCAAAGCAACAGTTACCAAATAATTTGGCCTTATCGCCTGTTAAAGCAAAGAAGGGCTATACCATTGGTTCTAATAATTACCCAGAGGTATCGTATACAATGAGGAAAAGAAGAATGAATTATTCAGACAGCCAATCAGAAGTGTCCCCTGATTTTCCTTATGGAATATACCGCACTTCCTCTACCTCATCAGCTGCTGGCAGTATGTCTCCTCCTGCATTTATTGTGGAAAGAACTGAATCAGTTGATGAAGCTAAATATGAATATCGCAAGAACTGCAgTGTTGGTGGTAAAGATGTAAACGATGTAAACGAAATTTGCAAAATCAACTCAAATGCTGCAAAATTACTTGGACGAGCAGATTTAGTGAGGACATGGTCACTTGTTTCTATGGTGATGGAGAAATGTCTTGGACCTAATGACAACTATGACGAAAGCCCCTGGGCGTTTCATCCATTTGGAAGGGGACTAATTGAATCATTATTCACTTACTACATGAAGATACGTGATGTTCAAACATTGGCTCTACTCAGCTGTGTGTTATCAAAGCAACAGTTACCAAATAATTTGGCCTTATCGCCTGTTAAAGCAAAGAAGGGCTATACCATTGGTTCTAATAATTACCCAGAGGTATCGTATACAATGAGGAAAATAAGAATGAATTATTCAGACAGCCAATCACAAGTGTCCCCTGATTTTCCTTATGGAATATACCGCACTTCCTCTACGTCATCAGCTGCTGGCAGTATGTCTCCTCCTGCATTTATTGTGGAAAGAACTGAATCAGTTGATGAAGCTAAATATGAATATCGCAAGAACTGCAGGCTACTGGACCCTTCAATGGGAAGACAATACGATTGTTTCAAAAAGGCTTATGCAGATATCCTGTATCGATGGAATTTCTTAACCAAACGAACCGAAGTGATGAAATATGTAGAAGAATCACCTTCGCCTCACCGTGGCCTTGATGTTCAAGTAAAGTGTCCGAATTGCTCTCAAACGCAACGCGAATCTCAGTGTGTTACTTGCAAGTCAATTATCGTCAAATGTGCAGTATGCAGAATTGGAGTAAGAGGTTTGTTAAGcttctgtgtcgcgtgtggccatggcgggcacaccttccacatgatggaatggtttcagaaaatggagagttgtgcaactgggtgtggttgctattgtttaaagaatggatcaatcgtgtcagacgaagaatattcgaattctggatattatagatgagaggactggtatttagaaatgatcaattttggggtctgtggggagGCTAGAAGCTTTTCTACCGTATGAGTAAATACCCTAACAGTCCAAGAGCTTTTTAGGAGGCCATCTAATTGACAAGTAGTCTGGGAGATCACTCTTTGCCAAGAAAGTAGATTAACTTCTGATATATTTTGTAAAATGAATTGTAAATAGTCAGCAGATGATCAAATTTTGTATCGAAAAAAAAGTTGTTAAAAGTATTGTCTTGTACCTCAATTTTTTAATCTCAAGTTATGCAAAAACCCAAAAACAGAAGCGTAAATTCCGAAGGCAACCCTGATTATTTACTGTACAATTCGTGGTTGAAAACGTAGTGTAGTGACGTGAGAATATTGGCAGGCTAAGTTTGCATGGTGACGATAGAATTTTCTGCAGGCNcttctgtgtcgcgtgtggccatggcgggcacaccttccacatgatggaatggtttcagaaaatggagagttgtgcaactgggtgtggttgctattgtttaaagaatggatcaatcgtgtcagacgaagaatattcgaattctggatattatagatgagaggactggtatttagaaatgatcaattttggggtctgtggggagGCTAGAAGCTTTTCTACCGTATGAGTAAATACCCTAACAGTCCAAGAGCTTTTTAGGAGGCCATCTAATTGACAAGTAGTCTGGGAGATCACTCTTTGCCAAGAAAGTAGATTAACTTCTGATATATTTTGTAAAATGAATTGTAAATAGTCAG

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05773 all species →	RWD	RWD domain	Domain	Interproscan
PF17120 all species →	zf-RING_16	RING/Ubox like zinc-binding domain	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR049567 all species →	Family	GATOR complex protein WDR59-like	Interproscan
IPR006575 all species →	Domain	RWD domain	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR039456 all species →	Domain	WDR59, modified RING finger, H2 subclass, C3H3C2-type	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR049566 all species →	Domain	WDR59/RTC1-like, RING zinc finger domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46170 all species →	GATOR COMPLEX PROTEIN WDR59	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005774 all species →	Cellular Component	vacuolar membrane	Interproscan
GO:0034198 all species →	Biological Process	cellular response to amino acid starvation	Interproscan
GO:0035591 all species →	Molecular Function	signaling adaptor activity	Interproscan
GO:0035859 all species →	Cellular Component	Seh1-associated complex	Interproscan
GO:1904263 all species →	Biological Process	positive regulation of TORC1 signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20409	WDR59, SEA3; SEA/GATOR complex protein SEA3/WDR59	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.