Gene detail

Detailed information of scaffold2.g183.t1 in Aurelia aurita

Genomic Location: scaffold2:2166209...2190440
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold2.g183.t1

cgcgcagggacaacaaaaatggccgcatattgaaacgtaagcagttggagctccgacgaaatactcgactcaaataacaacaccagacacccaaaagcctataaagactgccattagatactcaagaacccaaagatacgaacaagatgccgctatttaattcatcttcggctttcgatggcgaaattgaaaatgcaacaagtgaatacaacacaacggaagactggcaactcattatgaatatatgtgataagataaagaccacgcccaacggcccaaaggaaggattgaaagctttaatgaagagactatcacacaaagtacctcatgtatcaatgcaagcactaacactgatggatgcttgtgtcaataactgtgggaagccatttcatctagaaattagctcaagagactggatctatgaagccagaggtctagtatcaaggggacatccaaaggtagcagaaaaattaaaagaattgattgagcaatgggcagaagagtttaagagtgatccacagctgaacttacttgtacaattttacaagaaactgaaatcagagggtgaaagttttggctcaaaatcagacccggaggtgaaggcaaaatcgaagaaacaagaattagaattcaaggaagatcttgatctagcaattgcactttcactaaatgattccccagctgcaagcaaggcaccaacacagaatctgtatccagcagttagcagtgcagtctcttctgctcctcctgagcgagaacctgtcaaagctcgagcactctatgactttgaagcagctgaagataacgaattatcattcaaaacaggagaaattattcttgtatctgataacagtgaccaaaattggtggaaaggcgagggaacaagaggagttggactatttccagctaatttcgtgacaactgatctaaatcagccacctccagaagaaactaaaaaagagaagaagaaaaaggttcgattcagtgatgaatctagaagccagcaacagccaaaagcaacgaaactaaagaccgtgatcagcgaggagagattagaaacatgtcttgctatgctgaagaatgcaagtccaaccgaagaagatgacgaagaagaaactattagagggttagaagataattgtgcagaaatggcaccaatgattcaaaataaaatagaagtctcagaaaaaaaacagactgatttggacgaattaaatcaacaatttatacaagcaataacgttatatcaacagagcatgaaagaaccaataccagcaccaacaattcctgtatatacttcaaatcaaccgcaatatcaacctggacgaggaatgcctggctatgcagcttctccttatcaaccacaggcccaacagcagatgtatgctggtgctcagctgccggcagctggaatgcaaggaatgcagtatgccccggtttcagctggtatggcgcaggcagcagcaatggatcctagatattcatctcaaggacccgcaagtttgccaacgcagcaacaatacgcagcatatcaacaggcaatgcagaacgcagggtatcaagatacaggatattacgcagcgactagtactcaggactcatacgcgcaatctcaacaacaacaaggagcggcatatgattataatatggcacatcaacaacagcaacaacatgggcaaatgtattcgcaagcaacggtgtatcagtaagcaggcatataattacagtaaaagctctgtttagcccccattattttaagcccccttgaaatatttctctcctttccaatccaaacagtaaaaaaaacctctcttgtaagccacctttaccttgttcaaatttgtctaaagatgtccattatttcaataaagcaatttgaataaaatacgaagtaaaagtcctacaattcgatgttttgaacaagtcttcccctcaattaggccctgattaggcccttctctttagcctacaaaattaggtatgccctccgggttttcatagagcttttactgtatagttaattgtattctttacatgtttataacctgtaataattttggaagcagtaacaaaagtaccttaactaaagttacatttttgctaacccggtggtttgaacaaaccggatgaaatgttctctgccaatacgtcaaaagcggatgacattaaaagcggtgcacatggcatatttgtttaagtttgtatatccaaaataccaaaaatagacgcgtttatcgtgcactaacgatctttcacaacataagatatgctcgaaatcatgaatggcttgaaaggtactggaggtactttacattaattctaccatttgcatttttgatgtcttgattattttcagaattacactcttttttgtaagaaaccgcttgtaagaaactgcagtagtatcttccagaaaattaagaaactctactagaaacgatcagaggtcacttcaaagttgagaaactttttcaagttttagttgtgagttgcaaagtgttttcaaacagaaaatgcatcaccaacccaaataatattaaaaagcatacattttgttttatgaatttgttctttcttgtaatttttgtttcaaaaagcggtccgcaatgaattttgaaaagatatgaaattcagttttatgataaattaagaaactctgcaagaaactttactataaaattaggtcctacgttgagaaaccctactgcaaaatcagttagattataatctttgtaacttctaacttatgaaaatccccagtatctaaaggtcaacaatatggttgtaagatcaagtccgtcgcgtttctagttatgatttaggaatttgatgacgtcacaatctcaaacaagttgaaatatagaaaacgctgttattatgaaaataatcaagatccgtaaagtaacggacttcgtaaagaagtggcttcacttaaactgtgatacgatgttcgctcagatatacgcgaaaatcgctccgatatgatcagttagaagtttattcgaaaccaggttgctcgccaaagcgttctttaggatttgatattaattgagtgtttctcaccctcgaatttgtagagtacttgaaaatattatctccgactttcctacagaatctccagctgccagcttgtttcatcttctatgacaaatcatttgtcgttacttttattgtatttttaggaatttatttcattttctgagttctgtaaatattttcttaattaattcttataagtatttggcagaggttgcattaatatagctaagatccggtgactacgcaacatatacaaattacatttatgccgggtgagtcagaaaaatgttcagacatttgaaagccagtagctctcaaaccatttatcagattcctataaagtggtaatacctgtgttgctagcatctcaactcagataagaaaatttattttgtcaaaatcagcaaattaaaattgattttatgagaatacttcagctcaacgaccgattttgacgaactaaactttcttatcttagggtgtgtttgattggtaccaattctgaaaatggtagacttggtaggctcggaattcgcgtttgattgactccaaaattctgaaaacggtaggtttgcaaaaccctggtggtgaatccgaaacctgctgtttaaaagattgttgcgtttgattgggaaatagattccgtctctgcgaagtctactgttttcagaatttggtaggtttggaattaccaatcaaacacaccctaagttgatatgttagctacacagaattatcagtttataggaatcttattgattgttggagagctactggctttcaaacgtctaaacattttctgactcacctagtagctaaggctgtctgttgtctgtaggtttcaacttgcgtgcagcttgcccttgatacgaatagttatgtgagtgtgagtcgaaaaacgtttcggcgtttgccaaaagttacagtcgtgaatgagcgataaacttcaatgaaccaaagttcattttataggggaaaggcaatcgtccgtttgaaaatgtatttcgttatagttggtcttgctgttctaaagctatagtcgattttcttgcaagcggtttcaaaagtgtttgggaaaggactaaacatgcccatcaaatttcatcgttgttatctttagactgatgtttcatagcatcatttatgctggaaaacaccgaagtgagttgtgcttatattttttcagagatcaactaaaagaagctgaaggctgacatgcctacccaccccccaaccacgagtttccccttcactttgaataagatgtattacgtagcattggtatttacaatacagcaagcaagatgctattcttgtaattaattcatgtcttgtaattcgtattattgtagattgattgttgaatttaacgtaacagtaaaatttagattgtctcaaaataatttcttgtgtgcaagtatttaaggcttctccattgcttagttattcctcttagtttttaaccctgggaaaagatcttagatcacgttgacactgtaccggtacagtggacttatacatcgtcgtagtttcgctccttgcctgaactgttacatcccggtacagtttgatccgttgcaaagttgttacggctcaagagcgttcacactgctccagaacaaattttttctatagatagaaggaacaaatgtgttacggattagcaggaactgtgtaaacgggaggctgatccgttacactttagttacggatccaaagttgtaccggtacagtgtaaacgggatcttatgcatgcgaaatttgctcgttgcagcgttagaaatatacaacagagtaaaatacgttagaaata

Transcript

scaffold2.g183.t1

CGCGCAGGGACAACAAAAATGGCCGCATATTGAAACGTAAGCAGTTGGAGCTCCGACGAAATACTCGACTCAAATAACAACACCAGACACCCAAAAGCCTATAAAGACTGCCATTAGATACTCAAGAACCCAAAGATACGAACAAGATGCCGCTATTTAATTCATCTTCGGCTTTCGATGGCGAAATTGAAAATGCAACAAGTGAATACAACACAACGGAAGACTGGCAACTCATTATGAATATATGTGATAAGATAAAGACCACGCCCAACGGCCCAAAGGAAGGATTGAAAGCTTTAATGAAGAGACTATCACACAAAGTACCTCATGTATCAATGCAAGCACTAACACTGATGGATGCTTGTGTCAATAACTGTGGGAAGCCATTTCATCTAGAAATTAGCTCAAGAGACTGGATCTATGAAGCCAGAGGTCTAGTATCAAGGGGACATCCAAAGGTAGCAGAAAAATTAAAAGAATTGATTGAGCAATGGGCAGAAGAGTTTAAGAGTGATCCACAGCTGAACTTACTTGTACAATTTTACAAGAAACTGAAATCAGAGGGTGAAAGTTTTGGCTCAAAATCAGACCCGGAGGTGAAGGCAAAATCGAAGAAACAAGAATTAGAATTCAAGGAAGATCTTGATCTAGCAATTGCACTTTCACTAAATGATTCCCCAGCTGCAAGCAAGGCACCAACACAGAATCTGTATCCAGCAGTTAGCAGTGCAGTCTCTTCTGCTCCTCCTGAGCGAGAACCTGTCAAAGCTCGAGCACTCTATGACTTTGAAGCAGCTGAAGATAACGAATTATCATTCAAAACAGGAGAAATTATTCTTGTATCTGATAACAGTGACCAAAATTGGTGGAAAGGCGAGGGAACAAGAGGAGTTGGACTATTTCCAGCTAATTTCGTGACAACTGATCTAAATCAGCCACCTCCAGAAGAAACTAAAAAAGAGAAGAAGAAAAAGGTTCGATTCAGTGATGAATCTAGAAGCCAGCAACAGCCAAAAGCAACGAAACTAAAGACCGTGATCAGCGAGGAGAGATTAGAAACATGTCTTGCTATGCTGAAGAATGCAAGTCCAACCGAAGAAGATGACGAAGAAGAAACTATTAGAGGGTTAGAAGATAATTGTGCAGAAATGGCACCAATGATTCAAAATAAAATAGAAGTCTCAGAAAAAAAACAGACTGATTTGGACGAATTAAATCAACAATTTATACAAGCAATAACGTTATATCAACAGAGCATGAAAGAACCAATACCAGCACCAACAATTCCTGTATATACTTCAAATCAACCGCAATATCAACCTGGACGAGGAATGCCTGGCTATGCAGCTTCTCCTTATCAACCACAGGCCCAACAGCAGATGTATGCTGGTGCTCAGCTGCCGGCAGCTGGAATGCAAGGAATGCAGTATGCCCCGGTTTCAGCTGGTATGGCGCAGGCAGCAGCAATGGATCCTAGATATTCATCTCAAGGACCCGCAAGTTTGCCAACGCAGCAACAATACGCAGCATATCAACAGGCAATGCAGAACGCAGGGTATCAAGATACAGGATATTACGCAGCGACTAGTACTCAGGACTCATACGCGCAATCTCAACAACAACAAGGAGCGGCATATGATTATAATATGGCACATCAACAACAGCAACAACATGGGCAAATGTATTCGCAAGCAACGGTGTATCAGTAAGCAGGCATATAATtacagtaaaagctctgtttagcccccattattttaagcccccttgaaatatttctctcctttccaatccaaacagtaaaaaaaacctctcttgtaagccacctttaccttgttcaaatttgtctaaagatgtccattatttcaataaagcaatttgaataaaatacgaagtaaaagtcctacaattcgatgttttgaacaagtcttcccctcaattaggccctgattaggcccttctctttagcctacaaaattaggtatgccctccgggttttcatagagcttttactgtatagttaattgtattctttacatgtttataACCTGTAATAATTTTGGAAGCAGTAACAAAAGTACCTTAACTAAAGTTACATTTTTGCTAACCCGGTGGTTTGAACAAACCGGATGAAATGTTCTCTGCCAATACGTCAAAAGCGGATGACATTAAAAGCGGTGCACATGGCATATTTGTTTAAGTTTGTATATCCAAAATACCAAAAATAGACGCGTTTATCGTGCACTAACGATCTTTCACAACATAAGATATGCTCGAAATCATGaatggcttgaaaggtactggaggtactttacattaattctaccatttgcatttttgatgtcttgattattttcagaattacactcttttttgtaagaaaccgcttgtaagaaactgcagtagtatcttccagaaaattaagaaactctactagaaacgatcagaggtcacttcaaagttgagaaactttttcaagttttagttgtgagttgcaaagtgttttcaaacagaaaatgcatcaccaacccaaataatattaaaaagcatacattttgttttatgaatttgttctttcttgtaatttttgtttcaaaaagcggtccgcaatgaattttgaaaagatatgaaattcagttttatgataaattaagaaactctgcaagaaactttactataaaattaggtcctacgttgagaaaccctactgcaaaatcagTTAGATTATAATCTTTGTAACTTCTAACTTATgaaaatccccagtatctaaaggtcaacaatatggttgtaagatcaagtccgtcgcgtttctagttatgatttaggaatttgatgacgtcacaatctcaaacaagttgaaatatagaaaacgctgttattatgaaaataatcaagatCCGTAAAGTAACGGACTTCGTAAAGAAGTGGCTTCACTTAAACTGTGATACGATGTTCGCTCAGATATACGCGAAAATCGCTCCGATATGATCAGTTAGAAGTTTATTCGAAACCAGGTTGCTCGCCAAAGCGTTCTTTAGGATTTGATATTAATTGAGTGTTTCTCACCCTCGAATTTGTAGAGTACTTGAAAATATTATCTCCGACTTTCCTACAGAATCTCCAGCTGCCAGCTTGTTTCATCTTCTATGACAAATCATTTGTCGTTACTTTTATTGTATTTTTAGGAATTTATTTCATTTTCTGAGTTCTGTAAATATTTTCTTAATTAATTCTTATAAGTATTTGGCAGAGGTTGCATTAATATAGCTAAGATCCGGTGACTACGCAACATATACAAATTACATTTAtgccgggtgagtcagaaaaatgttcagacatttgaaagccagtagctctcaaaccatttatcagattcctataaagtggtaatacctgtgttgctagcatctcaactcagataagaaaatttattttgtcaaaatcagcaaattaaaattgattttatgagaatacttcagctcaacgaccgattttgacgaactaaactttcttatcttagggtgtgtttgattggtaccaattctgaaaatggtagacttggtaggctcggaattcgcgtttgattgactccaaaattctgaaaacggtaggtttgcaaaaccctggtggtgaatccgaaacctgctgtttaaaagattgttgcgtttgattgggaaatagattccgtctctgcgaagtctactgttttcagaatttggtaggtttggaattaccaatcaaacacaccctaagttgatatgttagctacacagaattatcagtttataggaatcttattgattgttggagagctactggctttcaaacgtctaaacattttctgactcacctagtaGCTAAGGCTGTCTGTTGTCTGTAGGTTTCAACTTGCGTGCAGCTTGCCCTTGATACGAATAGTTATGTGAGTGTGAGTCGAAAAACGTTTCGGCGTTTGCCAAAAGTTACAGTCGTGAATGAGCGATAAACTTCAATGAACCAAAGTTCATTTTATAGGGGAAAGGCAATCGTCCGTTTGAAAATGTATTTCGTTATAGTTGGTCTTGCTGTTCTAAAGCTATAGTCGATTTTCTTGCAAGCGGTTTCAAAAGTGTTTGGGAAAGGACTAAACATGCCCATCAAATTTCATCGTTGTTATCTTTAGACTGATGTTTCATAGCATCATTTATGCTGGAAAACACCGAAGTGAGTTGTGCTTATATTTTTTCAGAGATCAACTAAAAGAAGCTGAAGGCTGACATGCCTACCCACCCCCCAACCACGAGTTTCCCCTTCACTTTGAATAAGATGTATTACGTAGCATTGGTATTTACAATACAGCAAGCAAGATGCTATTCTTGTAATTAATTCATGTCTTGTAATTCGTATTATTGTAGATTGATTGTTGAATTTAACGTAACAGTAAAATTTAGATTGTCTCAAAATAATTTCTTGTGTGCAAGTATTTAAGGCTTCTCCATTGCTTAGTTATTCCTCTTAGTTTTTAACCCTGGGAAAAGATCttagatcacgttgacactgtaccggtacagtGGACTTATACATCGTCGTAGTTTCGCTCCTTGCCTGAACTGTTACATCccggtacagtttgatccgttgcaaagttgttacggctcaagagcgttcacactgctccagaacaaattttttctatagatagaaggaacaaatgtgttacggattagcaggaactgtgtaaacgggaggctgatccgttacactttagttacggatccaaagttgtaccggtacagtgtaaacgggatctTATGCATGCGAAATTTGCTCGTTGCAGCGTTAGAAATATacaacagagtaaaatacgttagaaata

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species
Ubiquitin family	UBD\|Alpha-Helix\|VHS · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00790 all species →	VHS	VHS domain	Repeat	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR002014 all species →	Domain	VHS domain	Interproscan
IPR008942 all species →	Homologous_superfamily	ENTH/VHS	Interproscan
IPR050670 all species →	Family	Signal Transducing Adapter Molecule	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45929 all species →	JAK PATHWAY SIGNAL TRANSDUCTION ADAPTOR MOLECULE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0033565 all species →	Cellular Component	ESCRT-0 complex	Interproscan
GO:0043328 all species →	Biological Process	protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04705	STAM; signal transducing adaptor molecule	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.