Gene detail

Detailed information of scaffold2.g199.t2 in Aurelia aurita

Genomic Location: scaffold2:2398878...2437159
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold2.g199.t2

gttcgcgagtgtttgatcaaaagacaggctgggattcccctccgctccaagcaaaagcaacaagatgagcgggatcggacgtggcagaggcagaggaagggcaagaaacagaactgataatgtcaccagcacagaagtgcccaagcctggtccaacaaaagatgcgataccagaacagaagccaaaagaagcgccagcttcggttaggcccaggtcaatgggaaggggccgaggaactgcaattaacacgacaggttcgacaacacaaaggcaggtgactttaccgaaagcaggtgccatggatttaccaaaaagacctggttatggaactgctggaagaagaaccagagtggctgcaaatttctttgaaattgacttcaaagactatgacatctaccattatgatatttcaatcaacccaagcacatgtccaagggcattgaatagacaagtcattgaaagattggttttgatgtatcagaaaatctttggagaacataaaccagtttatgatggacagaaaaatgtttacactgttcaaccgttgcctatcggtaaagacaagagggattttgatatcaaatacttcgatgaagatgacaaaagggaaagacagtttaatgtttcaatcaagtgggtggcctgtatcagcatgcatgctttatcagaagcattacgtggtgcagtcaatcagatgccatatgataccatatctgcaatggatattgcattgaggcattcaccatcattaaaatatatcacagttggcagatcatttttctcacctcctgatggagacagtctcatccagttaggccatggcagggaagtttggtatgggtaccatcaaagtcttaggccatcgcaatggaaaatgatggttaacttagatatctgtctgagtgctttctataaaccgcagcccatagtcgactacctttgtgaagttctggaaaaagatttcaaggggagagaaagaagagaacttttcgatcacgagaggctgagattcactagagaagttaaaggtttaaagattgttgtgactcatttgggaatccaaaagcgaaaatatagagttactggcgtgacaaccgaagcagttgccaagaagacttttaaaatggagaaagatggagcacaagttgatgttactgttgcatcgtattttgaagaaaaatatcaagttaaattaatgtatccctatcttccctgcttgcaagttggagttgccagcaaaggatgtttcttgccgatggaagtctgcaatgttgtccctggtcaacgatgcgtgaagagattaagtgacaaagaaactgcggaaatgattagagcatctgggagaactgcacaggcgaggaaagaagatattaagaaaatcgtagcaaaggcagctttctcgaaagatgaacatgcgaaatattttggattggaagtaaaacatgaaatggcagtcgtcaatgctaggattctggagccacctatgatacagtatagtttaaagattgttgtgactcatttgggaatccaaaagcgaaaatatagagttactggcgtgacaaccgaagcagttgccaagaagacttttaaaatggagaaagatggagcacaagttgatgttactgttgcatcgtattttgaagaaaaatatcaagttaaattaatgtatccctatcttccctgcttgcaagttggagttgccagcaaaggatgtttcttgccgatggaagtctgcaatgttgtctctggtcaacgatgcgtgaagagattaagtgacaaagaaactgcggaaatgattagagcatctgggagaactgcacaggcgaggaaagaagatatcaagaaaatcgtagcaaaggcagctttctcgaaagatgaacatgcgaaatattttggattagaagtaaaacatgaaatggcagtcgtcaatgctaggattctggagccacctatgatacagtatagtcagaaggactattacttagaaatgtggaaatatggacaaaaaagattcgttacccaattaagtgcatgggacatgagagataaatcattccactgcgcaagtaacatcaacgtttgggccttgctcatattcgcaacagaacgacaatgcaatttccaggctttggataatttcacgaaagagctggctggtgcttgtatgcgtgcaggaatgacgatgacaagacaaccagtttattgtgattatatcagccaagctaatgtggatgttgatgaattgtttagtaatatagttgcaaaacatatggacttagacatgatccttgtggtactacctggtaaaactccgtattatgcctggaattacagagagttggcgactctcctcactctacgtagcaggttcgacagggcggggactcgaaccaccaaccctcaggagataataacagatcttgcagcgatggtcaaggaattgttacaggccttttaccgagcgacgagagtgaaaccattcagaattatcatgtatcgtgatggagtcagtgaggggcagtttcaacaggtcgtgcagaatgaactgaaagcaatccgcgaggcctgtacgttgctggagaaaggatatgagcctgggataactttcatcgttgttcaaaaacgtcatcacacgagattctttccagaacaggaatcagataaggtcggaagagctggaaatgtgcctccaggtacaactgtcgacacaggtatttgtcatcccaccgaatatgacttctacctttgcagtcatgctggtattcagggaacaagtcgaccggcacattaccacgtgctttgggatgacaatgatctaacgccggatgagttgcatcaacttacattcctgttatgtcacacgtatgtcagatgtacaagatccgtttccatccctgcaccggcgtattacgcgcatttggccgcattcagagcacgatttcatgtcgatagcttgaaaggtgggagctctgatagcggacgcacaaaaaccaaggcttcagatgcagaaggatcatttaaggcgagtgacgaagcttgcaaacctcatgcgaacctctcgaagactatttactttgcctaactgcaaatcaaactagaggagaaaagaaaagttgccatgcaacgaaaattcttaatttataatcgtacgatacctggtaagtaaaaaaacatggggcatttgtcaatgcatattggtgccgtgtactttctttgaacatttgttgtataggaaaaaggcttgcttagatgtgaagatttgtttgatggaaatcggtgactcacccggtatgtgtgcataggtttaaacatgaacatgagttttgaaagataatttaacttattttttgagtaatcattgtaaaagtattttcgtagtttattgattaagattttaaagattttcgaacttaaagaacgccggtcaaccagcatcctttgcggtcgctctttgcagagaatattgtcatatgaaaatggccaccgcagtcgaaaggcaataagcgaagcgcgcaacggatgctggttgattggcgttctttaaagcagaaaatgttaaagcttttgcccagctgctgcgaaatatctcagatttctttactgcatgatacaaaaaaattgttgacgtttgaaaatctgcaaaatttggttttgccaatgatcacgagatactttctagtgtaatcaagcatgtatgtatgattttgccatataacaattacaatatagatttaaaaaaaagaaaattatctaattataagaacatatagcgcagttcggttttttaggcacttcaaatttttaagattgacattttgtttgaacaagaattatgcttaaaacggtccatgctagactgattacagagtcgtagttatcgctatagatagactgatggacgcttaaactagtatgcgcggtctcggtttggtgcaagtctcgttttgatgagcgattactgggacccatcctaataggtctaagtccatacatagaccagtaaattatccatgggtattactaatagaccattccgcagtcggatgcgaaggagctgttcgcgttgtatctcggtatcacatgggggtttcgaaattgaattagaatccgagttcgaaactcccatgcgatcccgagatgcaacgcaaacagctccttcgcattcgactaagtaatggtctcttgtaggaccagtttctaaaatagaaggataaatgacaaatttaaacgattaaaattatgaaacatactgttgccattaaattcgagctcaccaacaaacaaccacatagaaagttaatttcagtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatcaatttgccactaaataatataaaatttacaatgttttaaaagctaaaaatagatacattacaattttaatacaaaataaataaatacttgtaaaaagcacccctaactgtagtgatagcattaaaaggtcgaattgaccttatttccataatggtcccctcagaggtggttgcttaaggctggtttccattaaatcgtaagaggatcggcgacagtctgcgatcgtcggcgatcccttcttccatcttccatctgcgatcataaaggctggtttccatgtttgagtgaaatataacatcataatttaactgaaaatttagagcgtagtcttaatacatttccagaagggcatgacttggtaacagtaaatcttttccgccaaggaactgatacatagctactgtggagtgggtgccagatccactcactgaaagtgatcagcttcattctttcttgatggattttggcaaccaaagttatctgaatctttttgagattctccataactttataacgatatagcagactttgatttgataaatcttcaaattgaagttcgccgtttaattagtgtagaatgtataatttgattcagttttataaatcctttatttaagctcaaaataccgggtgtcccagactgatgtatcgtcgtttaccgagctgtgcaatcatgaattatgcaccgatttgaatgaaacaccaccaataatttgtagcagaaagcctaacttcgatgtagaaaattatttcactaaaattggtcataccattatttaaagatacgggttattttgcttggcagttatttttgaacatctaccatctaccttaaagagagctaacaacttcgctagtgtttttccaaagtttcagcttcaaaaaatgaaagcgagcatgctagtcctcgaagaagcaaaacctaatgacaaatatggggacgactgcactgtagcggaccagctttatgtcgtatctctcgggaacgtgtttgaacaaataccctaccaaccctaactgagccctaccttaccctaactaaccctaccttaccctaactaaccctaactaaccctaactaaccctacaaaacctaactctgacccaaacccttaccccatgacacataattttcccatactgatagttggtccgctaaagtgcggacttgcccaaatatgcgcttcttacatttcaatgttgcttatttaagaccccgtttaccggtacagctttggaaccgtaacaaaagtgtaccggatcagcctcccgtttgttcttgctaatccgtgacacttgctcctcccatctatagaaaaaatttgtttggagcagtctaaacgctcttgaaccgtaacaactttgtagtgggtcgaaactgtaccggtacagtgtaaacggggtcttaaattcccccggattggttactcacccggtgtaaagatatttgttttcaaatataaatttgtgtatctgtgacccaagtggtagcaaattttaacattgtagttatattacgagttttcgtagatttgaatctttattaaaacagggcagactttctgaaatatagacaatttttcttacatttaaaacccttccatcgtcagtaatctttgtactggatgagtgaaatgataccaggtgggccaaaagttattctgtttggaaggctgctgtcgaaaaaaaccaattgggtatt

Transcript

scaffold2.g199.t2

GTTCGCGAGTGTTTGATCAAAAGACAGGCTGGGATTCCCCTCCGCTCCAAGCAAAAGCAACAAGATGAGCGGGATCGGACGTGGCAGAGGCAGAGGAAGGGCAAGAAACAGAACTGATAATGTCACCAGCACAGAAGTGCCCAAGCCTGGTCCAACAAAAGATGCGATACCAGAACAGAAGCCAAAAGAAGCGCCAGCTTCGGTTAGGCCCAGGTCAATGGGAAGGGGCCGAGGAACTGCAATTAACACGACAGGTTCGACAACACAAAGGCAGGTGACTTTACCGAAAGCAGGTGCCATGGATTTACCAAAAAGACCTGGTTATGGAACTGCTGGAAGAAGAACCAGAGTGGCTGCAAATTTCTTTGAAATTGACTTCAAAGACTATGACATCTACCATTATGATATTTCAATCAACCCAAGCACATGTCCAAGGGCATTGAATAGACAAGTCATTGAAAGATTGGTTTTGATGTATCAGAAAATCTTTGGAGAACATAAACCAGTTTATGATGGACAGAAAAATGTTTACACTGTTCAACCGTTGCCTATCGGTAAAGACAAGAGGGATTTTGATATCAAATACTTCGATGAAGATGACAAAAGGGAAAGACAGTTTAATGTTTCAATCAAGTGGGTGGCCTGTATCAGCATGCATGCTTTATCAGAAGCATTACGTGGTGCAGTCAATCAGATGCCATATGATACCATATCTGCAATGGATATTGCATTGAGGCATTCACCATCATTAAAATATATCACAGTTGGCAGATCATTTTTCTCACCTCCTGATGGAGACAGTCTCATCCAGTTAGGCCATGGCAGGGAAGTTTGGTATGGGTACCATCAAAGTCTTAGGCCATCGCAATGGAAAATGATGGTTAACTTAGATATCTGTCTGAGTGCTTTCTATAAACCGCAGCCCATAGTCGACTACCTTTGTGAAGTTCTGGAAAAAGATTTCAAGGGGAGAGAAAGAAGAGAACTTTTCGATCACGAGAGGCTGAGATTCACTAGAGAAGTTAAAGGTTTAAAGATTGTTGTGACTCATTTGGGAATCCAAAAGCGAAAATATAGAGTTACTGGCGTGACAACCGAAGCAGTTGCCAAGAAGACTTTTAAAATGGAGAAAGATGGAGCACAAGTTGATGTTACTGTTGCATCGTATTTTGAAGAAAAATATCAAGTTAAATTAATGTATCCCTATCTTCCCTGCTTGCAAGTTGGAGTTGCCAGCAAAGGATGTTTCTTGCCGATGGAAGTCTGCAATGTTGTCCCTGGTCAACGATGCGTGAAGAGATTAAGTGACAAAGAAACTGCGGAAATGATTAGAGCATCTGGGAGAACTGCACAGGCGAGGAAAGAAGATATTAAGAAAATCGTAGCAAAGGCAGCTTTCTCGAAAGATGAACATGCGAAATATTTTGGATTGGAAGTAAAACATGAAATGGCAGTCGTCAATGCTAGGATTCTGGAGCCACCTATGATACAGTATAGTTTAAAGATTGTTGTGACTCATTTGGGAATCCAAAAGCGAAAATATAGAGTTACTGGCGTGACAACCGAAGCAGTTGCCAAGAAGACTTTTAAAATGGAGAAAGATGGAGCACAAGTTGATGTTACTGTTGCATCGTATTTTGAAGAAAAATATCAAGTTAAATTAATGTATCCCTATCTTCCCTGCTTGCAAGTTGGAGTTGCCAGCAAAGGATGTTTCTTGCCGATGGAAGTCTGCAATGTTGTCTCTGGTCAACGATGCGTGAAGAGATTAAGTGACAAAGAAACTGCGGAAATGATTAGAGCATCTGGGAGAACTGCACAGGCGAGGAAAGAAGATATCAAGAAAATCGTAGCAAAGGCAGCTTTCTCGAAAGATGAACATGCGAAATATTTTGGATTAGAAGTAAAACATGAAATGGCAGTCGTCAATGCTAGGATTCTGGAGCCACCTATGATACAGTATAGTCAGAAGGACTATTACTTAGAAATGTGGAAATATGGACAAAAAAGATTCGTTACCCAATTAAGTGCATGGGACATGAGAGATAAATCATTCCACTGCGCAAGTAACATCAACGTTTGGGCCTTGCTCATATTCGCAACAGAACGACAATGCAATTTCCAGGCTTTGGATAATTTCACGAAAGAGCTGGCTGGTGCTTGTATGCGTGCAGGAATGACGATGACAAGACAACCAGTTTATTGTGATTATATCAGCCAAGCTAATGTGGATGTTGATGAATTGTTTAGTAATATAGTTGCAAAACATATGGACTTAGACATGATCCTTGTGGTACTACCTGGTAAAACTCCGTATTATGcctggaattacagagagttggcgactctcctcactctacgtagcaggttcgacagggcggggactcgaaccaccaaccctcagGAGATAATAACAGATCTTGCAGCGATGGTCAAGGAATTGTTACAGGCCTTTTACCGAGCGACGAGAGTGAAACCATTCAGAATTATCATGTATCGTGATGGAGTCAGTGAGGGGCAGTTTCAACAGGTCGTGCAGAATGAACTGAAAGCAATCCGCGAGGCCTGTACGTTGCTGGAGAAAGGATATGAGCCTGGGATAACTTTCATCGTTGTTCAAAAACGTCATCACACGAGATTCTTTCCAGAACAGGAATCAGATAAGGTCGGAAGAGCTGGAAATGTGCCTCCAGGTACAACTGTCGACACAGGTATTTGTCATCCCACCGAATATGACTTCTACCTTTGCAGTCATGCTGGTATTCAGGGAACAAGTCGACCGGCACATTACCACGTGCTTTGGGATGACAATGATCTAACGCCGGATGAGTTGCATCAACTTACATTCCTGTTATGTCACACGTATGTCAGATGTACAAGATCCGTTTCCATCCCTGCACCGGCGTATTACGCGCATTTGGCCGCATTCAGAGCACGATTTCATGTCGATAGCTTGAAAGGTGGGAGCTCTGATAGCGGACGCACAAAAACCAAGGCTTCAGATGCAGAAGGATCATTTAAGGCGAGTGACGAAGCTTGCAAACCTCATGCGAACCTCTCGAAGACTATTTACTTTGCCTAACTGCAAATCAAACTAGAGGAGAAAAGAAAAGTTGCCATGCAACGAAAATTCTTAATTTATAATCGTACGatacctggtaagtaaaaaaacatggggcatttgtcaatgcatattggtgccgtgtactttctttgaacatttgttgtataggaaaaaggcttgcttagatgtgaagatttgtttgatggaaatcggtGACTCACCCGGTATGTGTGCATAGGTTTAAACATGAACATGAGTTTTGAAAGATAATTTAACTTATTTTTTGAGTAATCATTGTAAAAGTATTTTCGTAGTTTATTGATTAAGATTTTAAAGATTTTCGAACttaaagaacgccggtcaaccagcatcctttgcggtcgctctttgcagagaatattgtcatatgaaaatggccaccgcagtcgaaaggcaataagcgaagcgcgcaacggatgctggttgattggcgttctttaaaGCAGAAAATGTTAAAGCTTTTGCCCAGCTGCTGCGAAATATCTCAGATTTCTTTACTGCATGATACAAAAAAATTGTTGACGTTTGAAAATCTGCAAAATTTGGTTTTGCCAATGATCACGAGATACTTTCTAGTGTAATCAAGCATGTATGTATGATTTTGCCATATAACAATTACAATATAGATTTAAAAAAAAGAAAATTATCTAATTATAAGAACATATAGCGCAGTTCGGTTTTTTAGGCACTTCAAATTTTTAAGATTGACATTTTGTTTGAACAAGAATTATGCTTAAAACGGTCCATGCtagactgattacagagtcgtagttatcgctatagatagactgatggacgcttaaactagtatgcgcggtctcggtttggtgcaagtctcgttttgatgagcgattactgggacccatcctaataggtctaAGTCCATACATAGACCAGTAAATTATCCATGGGTATTACTAATAGACCATTCCGCAGTCGGATGCGAAGGAGCTGTTCGCGTTGTATCTCGGTATCACATGGGGGTTTCGAAATTGAATTAGAATCCGAGTTCGAAACTCCCATGCGATCCCGAGATGCAACGCAAACAGCTCCTTCGCATTCGACTAAGTAATGGTCTCTTGTAGGACCAGTTTCTAAAATAGAAGGATAAATGACAAATTTAAACGATTAAAATTATGAAACATACTGTTGCCATTAAATTCGAGCTCACCAACAAACAACCACATAGAAAGTTAATTTCagtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatcaatttgccactaaataatataaaatttacaatgttttaaaagctaaaaatagatacattacaattttaatacaaaataaataaatacttgtaaaaagcacccctaactgtagtgatagcattaaaaggtcgaattgaccttatttccataatggtcccctcagaggtggttgctTAAGGCTGGTTTCCATTAAATCGTAAGAGGATCGGCGACAGTCTGCGATCGTCGGCGATCCCTTCTTCCATCTTCCATCTGCGATCATAAAGGCTGGTTTCCATGTTTGAGTGAAATATAACATCATAATTTAACTGAAAATTTAGAGCGTAGTCTTAATACATTTCCAGAAGGGCATGACTTGGTAACAGTAAATCTTTTCCGCCAAGGAACTGATACATAGCTACTGTGGAGTGGGTGCCAGATCCACTCACTGAAAGTGATCAGCTTCATTCTTTCTTGATGGATTTTGGCAACCAAAGTTATCTGAATCTTTTTGAGATTCTCCATAACTTTATAACGATATAGCAGACTTTGATTTGATAAATCTTCAAATTGAAGTTCGCCGTTTAATTAGTGTAGAATGTATAATTTGATTCAGTTTTATAAATCCTTTATTTAAGCTCAAAATACCGGGTGtcccagactgatgtatcgtcgtttaccgagctgtgcaatcatgaattatgcaccgatttgaatgaaacaccaccaataatttgtagcagaaagcctaacttcgatgtagaaaattatttcactaaaattggtcataccattatttaaagatacgggttattttgcttggcagttatttttgaacatctaccatctaccttaaagagagctaacaacttcgctagtgtttttccaaagtttcagcttcaaaaaatgaaagcgagcatgctagtcctcgaagaagcaaaacctaatgacaaatatggggacgactgcactgtagcggaccagctttatgtcgtatctctcgggaacgtgtttgaacaaataccctaccaaccctaactgagccctaccttaccctaactaaccctaccttaccctaactaaccctaactaaccctaactaaccctacaaaacctaactctgacccaaacccttaccccatgacacataattttcccatactgatagttggtccgctaaagtgcggacttgcccaAATATGCGCTTCTTACATTTCAATGTTGCTTAtttaagaccccgtttaccggtacagctttggaaccgtaacaaaagtgtaccggatcagcctcccgtttgttcttgctaatccgtgacacttgctcctcccatctatagaaaaaatttgtttggagcagtctaaacgctcttgaaccgtaacaactttgtagtgggtcgaaactgtaccggtacagtgtaaacggggtcttaAATTCCCCCGGATTGGTTACTCACCCGGTGTAAAGATATTTGTTTTCAAATATAAATTTGTGTATCTGTGACCCAAGTGGTAGCAAATTTTAACATTGTAGTTATATTACGAGTTTTCGTAGATTTGAATCTTTATTAAAACAGGGCAGACTTTCTGAAATATAGACAATTTTTCTTACATTTAAAACCCTTCCATCGTCAGTAATCTTTGTACTGGATGAGTGAAATGATACCAGGTGGGCCAAAAGTTATTCTGTTTGGAAGGCTGCTGTCGAAAAAAACCAATTGGGTATT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02171 all species →	Piwi	Piwi domain	Family	Interproscan
PF08699 all species →	ArgoL1	Argonaute linker 1 domain	Domain	Interproscan
PF02170 all species →	PAZ	PAZ domain	Domain	Interproscan
PF16488 all species →	ArgoL2	Argonaute linker 2 domain	Family	Interproscan
PF16487 all species →	ArgoMid	Mid domain of argonaute	Domain	Interproscan
PF16486 all species →	ArgoN	N-terminal domain of argonaute	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014811 all species →	Domain	Argonaute, linker 1 domain	Interproscan
IPR003165 all species →	Domain	Piwi domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036085 all species →	Homologous_superfamily	PAZ domain superfamily	Interproscan
IPR003100 all species →	Domain	PAZ domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR032472 all species →	Domain	Argonaute linker 2 domain	Interproscan
IPR032473 all species →	Domain	Protein argonaute, Mid domain	Interproscan
IPR032474 all species →	Domain	Protein argonaute, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22891 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 2C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003727 all species →	Molecular Function	single-stranded RNA binding	Interproscan
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0016246 all species →	Biological Process	regulatory ncRNA-mediated post-transcriptional gene silencing	Interproscan
GO:0035198 all species →	Molecular Function	miRNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11593	ELF2C, AGO; eukaryotic translation initiation factor 2C	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.