Gene detail

Detailed information of scaffold2.g232.t1 in Aurelia aurita

Genomic Location: scaffold2:2959382...2962577
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold2.g232.t1

ctattgttatcaacatttaaaaactactgtacagaattataaatatatgaagtgaattcatgccttgattcgagagtaaagttagaggcaaattaatgtcaggcagttcaaggctgctggtgcagtacagatattataagggaatagggtaatcgcagcaaatttgggaatacgatttgctggaatttgggaacaaaagattctacaattttgcggcattccaaagctccagagaagcataaaagttcatacaagacggttcttgagaagttcaaaactgaagtcattctgaggtctgtgcaagccaaacatgattttatcaaataaattgtgtacatgtttgaaattaggactcggaatagcacttgtgttgcattttacagcagaagtaaaggcgaaaagtaagatcgttcctgaatcgaaatgtgctaataatttcccatgtttgatttttgaagacaaatttgacgattttgatctcaaaacatgggaacacgaggttacaacagtcagcggaggaaatggcgagtttcaatattacgcaaataaccggtcaaatagcttcgtccgggacggttcattacacctgaaaccgaccctaacacaagacacatacggagagggattcctaacaagcggtactttagacctctgggatgagcggtgcacctcaaaccgggaaaacatcggttgctaccggaaaggctccgaagataacatcatcaatccggtagtgtctgcacgagtgcgaacgaagaaaagtttcagcttcaaatacggacgaataagtgcccgagtcaagctaccgaaaggcgactggttatggccggctatttggctaatgccgacagatgaagtctatggtgactggccctcatcgggtgagattgatctgttggaagctcgtgggaacacacagttattcgaccgatcagggcgacatgttggtaacaagcatgtgtcgtcgacattgcattgggggccatactacaaagcaaacaattttcttaggacaatgggaacagcgaatatgaaagctgggtcgttctccgatgattatcatgtatttacgctcgactggaccaaagatacgatgcattttattgttgacaatacgactatgctgaaattcacagtccctgaaggaggcttctggaagcttggggaatatgataagttgatcccaggatctgcaaacccatgggctggaggcgagagaatggcgccttttgaccaggatttctacatcatcatgaatgttgctgtcggtggggtaaagttctttttagacggctttaaaccagaaagaccttggaaaaatgactctccaaaagcgaaggaagaattctgggctgcaagggacaaatggttgaagacttgggtcggtgatgaagtcgcaatgaagattgattacatccgagtttggaagctgaaatcggatgaaagcgaggttgagaagaacttggatagtaatattgtcaaatttgcacgtgcaggaaacactgaatttaacatgttgtaagaatgttgaagcaaagtcaacacttcggttgaagacatttttagcgcgcggttgaaatccttccaagatatacatcaaactcttaagctggattccaattggtacaaaatgtagagcgcgctacacttcaaccgatttgattggctaactccacattgacgtcaatcaacgaccaaaatcctttgttgctaaaagatagaaagtagagctctatatattttgcacccagaggaaaccaaacattacaactgtggtctccgtagcctatagacatcgctgtcgtgtgtccccaaaaagggtgatcatttttggctaagtctggaaaaataggataaagcgacaaatttcgtaccatgactatcaaagttgttcaattcacagaataccccctgacatcagttttaggatattctttaatttgattttttacatggtttagcaacaaggaaatttaaagataatttacataatcaaatttttatgattttatttgtaacaatacttgcgtagccaccgtagaaagttttccagacttcgttttgtaagtaatagttaataaagacatatctaaacc

Transcript

scaffold2.g232.t1

CTATTGTTATCAACATTTAAAAACTACTGTACAGAATTATAAATATATGAAGTGAATTCATGCCTTGATTCGAGAGTAAAGTTAGAGGCAAATTAATGTCAGGCAGTTCAAGGCTGCTGGTGCAGTACAGATATTATAAGGGAATAGGGTAATCGCAGCAAATTTGGGAATACGATTTGCTGGAATTTGGGAACAAAAGATTCTACAATTTTGCGGCATTCCAAAGCTCCAGAGAAGCATAAAAGTTCATACAAGACGGTTCTTGAGAAGTTCAAAACTGAAGTCATTCTGAGGTCTGTGCAAGCCAAACATGATTTTATCAAATAAATTGTGTACATGTTTGAAATTAGGACTCGGAATAGCACTTGTGTTGCATTTTACAGCAGAAGTAAAGGCGAAAAGTAAGATCGTTCCTGAATCGAAATGTGCTAATAATTTCCCATGTTTGATTTTTGAAGACAAATTTGACGATTTTGATCTCAAAACATGGGAACACGAGGTTACAACAGTCAGCGGAGGAAATGGCGAGTTTCAATATTACGCAAATAACCGGTCAAATAGCTTCGTCCGGGACGGTTCATTACACCTGAAACCGACCCTAACACAAGACACATACGGAGAGGGATTCCTAACAAGCGGTACTTTAGACCTCTGGGATGAGCGGTGCACCTCAAACCGGGAAAACATCGGTTGCTACCGGAAAGGCTCCGAAGATAACATCATCAATCCGGTAGTGTCTGCACGAGTGCGAACGAAGAAAAGTTTCAGCTTCAAATACGGACGAATAAGTGCCCGAGTCAAGCTACCGAAAGGCGACTGGTTATGGCCGGCTATTTGGCTAATGCCGACAGATGAAGTCTATGGTGACTGGCCCTCATCGGGTGAGATTGATCTGTTGGAAGCTCGTGGGAACACACAGTTATTCGACCGATCAGGGCGACATGTTGGTAACAAGCATGTGTCGTCGACATTGCATTGGGGGCCATACTACAAAGCAAACAATTTTCTTAGGACAATGGGAACAGCGAATATGAAAGCTGGGTCGTTCTCCGATGATTATCATGTATTTACGCTCGACTGGACCAAAGATACGATGCATTTTATTGTTGACAATACGACTATGCTGAAATTCACAGTCCCTGAAGGAGGCTTCTGGAAGCTTGGGGAATATGATAAGTTGATCCCAGGATCTGCAAACCCATGGGCTGGAGGCGAGAGAATGGCGCCTTTTGACCAGGATTTCTACATCATCATGAATGTTGCTGTCGGTGGGGTAAAGTTCTTTTTAGACGGCTTTAAACCAGAAAGACCTTGGAAAAATGACTCTCCAAAAGCGAAGGAAGAATTCTGGGCTGCAAGGGACAAATGGTTGAAGACTTGGGTCGGTGATGAAGTCGCAATGAAGATTGATTACATCCGAGTTTGGAAGCTGAAATCGGATGAAAGCGAGGTTGAGAAGAACTTGGATAGTAATATTGTCAAATTTGCACGTGCAGGAAACACTGAATTTAACATGTTGTAAGAATGTTGAAGCAAAGTCAACACTTCGGTTGAAGACATTTTTAGCGCGCGGTTGAAATCCTTCCAAGATATACATCAAACTCTTAAGCTGGATTCCAATTGGTACAAAATGTAGAGCGCGCTACACTTCAACCGATTTGATTGGCTAACTCCACATTGACGTCAATCAACGACCAAAATCCTTTGTTGCTAAAAGATAGAAAGTAGAGCTCTATATATTTTGCACCCAGAGGAAACCAAACATTACAACTGTGGTCTCCGTAGCCTATAGACATCGCTGTCGTGTGTCCCCAAAAAGGGTGATCATTTTTGGCTAAGTCTGGAAAAATAGGATAAAGCGACAAATTTCGTACCATGACTATCAAAGTTGTTCAATTCACAGAATACCCCCTGACATCAGTTTTAGGATATTCTTTAATTTGATTTTTTACATGGTTTAGCAACAAGGAAATTTAAAGATAATTTACATAATCAAATTTTTATGATTTTATTTGTAACAATACTTGCGTAGCCACCGTAGAAAGTTTTCCAGACTTCGTTTTGTAAGTAATAGTTAATAAAGACATATCTAAACC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00722 all species →	Glyco_hydro_16	Glycosyl hydrolases family 16	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000757 all species →	Domain	Glycoside hydrolase family 16	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR050546 all species →	Family	Glycosyl Hydrolase Family 16	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10963 all species →	GLYCOSYL HYDROLASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold2.g232.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.