Gene detail

Detailed information of scaffold2.g25.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold2:390281...438604
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold2.g25.t1

ctgacgaagagcctcgaagagcgcgcagtgattggcagaatttaactgatcacatgcaaactaaaatttcagctccgatagcgcgaccgcaaaatttcatcgatttcatgcacaaagtttcgttcaaagaccttcaacaagttttgcactccagtattcaagttttatcttatctggccacattggaatgtccacatgataacttcaggcatgatggaaaatgcataagagctttggcttatgaggacttcatcgatttcatgcacaaaatttcgttcaaagaccttcaacaagttttacactccagtattcaagttttgtcttatctggccacattggaatgtccacatgataacttcaggcatgatggaaaatgcataagagcattggcttatgaggggattgaagtcatctgcacagaatttcatggtgatgttgcaaaggtttctcgttgtgtgatgaattgttgtctcacaagtgtcctcatgcttcatgatggtaaaccagtgacaagtgccactattccaagagccctccagagtgtcaagaatgatgctattgatttcgtttgcaatcttacaaagggaagcccagtaattgcagaatctgtgcgcgtgcttttgcaaaatatttgtgtcaagtgtcctgagcgagctgaatacagaaacattctgtcattggatatctgcaaaattattcgagttcttcctgttaacatccgagaagttgttatcaattggataaagaaatattcaagaaataccaagattggttacagaacgttttcagtggacatcatcagcaagtatttgatcagtgacaatgttgtcgagaataatcaagatctgcaaactgatgggatttcatgtaacgtcactcttcttcaagccgtggttattcgatgctcagacagatcacctacagttcgagctaaagccttgtcttgccttcaccaagtagcctgttcaacacaacaaaatgtaattgccgctgtgaaggagtcactttccaattcagtcaatccatccagtttgttccaatcacaaaatataacaagaggtggaaaccctgaaagtcgcactgccgaaaggagtaccttgctggacttgataaggcgtcgtatcaaagatgataaagtacatgtgaggaaggcagccatacaggctctggaaagtttatcaaagttgatcgaagatggcttgaatgaggaggatatcagcttgattcacgaaagatgtatggatccctccctatcagtacgaaagcaagctgttcaatctcttacgcagctgttggaatatgcccctacgaatgctttgcttcaaaaattatggctgaacggtgtactgccaatggtatcagacagggaaaccactgcacaggaaaaatgcatcagtttgctggatgatcttatactctccaatattgtgccattcgatagaagcacgagccccgaacaaattttaacgtggaatcttcttgaaacaattgctggaagcgaaggccaagaattgagtcaatactttgacattatatgtgagaactggggcaagcaaggaaagttctctgcgaaattggcaaaaaatgtgcaaagtcatcttgagacgagaaatagcaaggctgcttggctgttcatatctgccatatcatcatcatgcgacaaaatcgaccccaaaatcattagtgaatattggtttaaaaatatcaaggatagttcatgctctgatgtggtcacgatgtcgagaatattgaaaacgatcaatacgatatcacataaattggcacaagaaatagctactcgtctgctcgatgatatccagctgaggatcttcagattccgatgtcctccagaactgattgcattgtgtgttcaatgtctctcaaagttatttgctcgcgctcctggtggtgatgaaaagttaagagaatggtgtgaaagtgtgttggccatttgcgaagaagatatttcgaaaagtgtcttgggaacagagcatgcaatacccattgataagattgaaacagcaaagaggctggtaacacttggtgaaattgcccagctttgtccttcaaaaactaatgaaaggatgttcatgatggtccagtcactacttttgccaactccgtctgaaaaaggaaacagtgatgagagtgcggcagccattcaaaacctagtcatctcatctacaaccaaagcctatgcgttcacgactctcgggaaattgtgcttgcaaaacgaaggcttggcaaagaaatgcgtcgcgttattagcacgagaattggaaatgtcgaaagatgctgctgttaagaataatattattgtggtgttatgcgatctttgcgtcaggtacacaaatcttgtcgatagatacattccgaatatcgctgcttgtcttgcggatcctgaaccgatcgtgcgtagacaagctattacacttctgacacatctcttacaggaagatttcgtgaagtggaaaggatctctcttctttcggttcatcacagctttggtcgatgaagacacagacatcaaacaatttgcttacaatcaattcaagcagtcagagactgaaaggaagagattttccctcgctggtgaccaaaataaagggaaacgcatgcaaatttacactttcctccttcaaaatatgaacgatgagcaacggtttaagttaactggaaagttatgtgaagagatttttggaccgatcgttgatgattcatttttggttgatgcgcaaagtcgacctttgattgaagatgcatttggtctgatcagctgccaggaaataaagatttcctcagcaaaatcaaaggcaattgaccccgatgtcgacgagatgatggaagaacaacaaatagctgcagtaagattgcgggccaaagttatcagtgccattgtgaagaagaatatgattgagaacattttcccaacaattatctcactcaagaaaaggttcgagcaagagaaatcgccacttttgcgtgatttgatgcgctctttgaaagagattatggctgactacaaagcagaggtgcaggacgttctaggcgctgacaagcagttagccaatgaaatcgcattcgacttgcgaaaatacgaagaaagacaacgcgaggccgcaatggctgccgctgcacagccaatgacgccagtcagaaatgcacagccgcaagtacagggttctgagggaagactacagccaggaccaagaacaccacttgccacaatacagagtcctcatccaatggtttctcctcgtgtcaactctgcaataacccctcgaaatggctcgatgttcacatcaccaaaactgaagaccctaacgaacgcaaatgtgacaattggtgctaatggagcttctcaatcagttcctttgaacgttaggccaccgccctcagctgtcaatcgcagaaatcttgcagctacagcccttctgaattcggccaagaaagttatggttagattgcaaaggctttccatttccaagcagatctcgatgacccccgaaaacactgagactccaagagcaatgtccaaaacaccattacccccgtcctatcagctcccaacaccaatggtaactgaaaatggaggaaatccttgtgctagtgaagtcgtccagaaaacacctgctccaagccggagagaaacatcaggaatgcttattccaaagggaagtgatcaagagtttatcgataacagagcaatcagtactcctcaaggcagtttatctcatatctcgttcttggctcctgctgacatcagcatgattccgatcgcccaatcacctgtacctgtcaagatcacaagactcacaaggaaacaaggaagagttgcccaaggacgaaatggcgttgaacatgttatttgtatgccttcacctgataaaccgtctgcaaagccgaatcattggaatgtacagagcccggcccgatggaacaagcgttaagaattgagcgaaactctgaataattctggattactgggtgagtccgactaacagaatgcatttgtcaagttataccgggtgtcccagaaaaaatactcagatttggttgggtgcaacgacgtggaagtcgctttatcaatggctaataactcttaaaggggcagtcagacgtgatgttgcgcgggacatttccattgtatttgcatgaaaagtgcttaggcctagcatcgactcgtcaatggagattttgaattggattatcgcacatttcaatccatctccatcgacattgttcttgacaatctcaaggatttaattgacagatattgttcgtctatgtcgatttcatgtatttgcaaagttattttgtttatcacacattcctgaaagtcgtaaacagagattttgcagaagcaactttgaagctgcgaagagataatctacaagtcgaagtgggcaagaaactccccaaagaatctggtttttgagtcagatttatgatgttaggtgaaaccgaaaggtgaatagaaccttctcacactctactggattcattgctcaattaatttcatcagaattacagcgaacaaagaggtacagtagacatgttttggtatttaggcctatacgaattggattgttacacgcagaatctgatacccgcgtttcgcgtctgactgcccctttaagatgttcctctaaagttaacttgaacatagatacctcatttgttggtactttgggagcagagatagtagtcttgaaagctcaaaactagtgtccaccaaaccagagctttggcattgtggcctaagcaaatcttcgaagaccgaattattgtgaagtcttgaaatgactttgaatttgtggtaatctgtgctttgcaagctacctggttttggagtatactcatatttgcatccctgtaaattggcagacgcattttacgtttttttttacttttctgctaaattaattggactagctaattaaaccttttcttgcctttcaagaagtaaacccagtggtccgccttgagtggtgtaactgaacactttagtacatcttaggaagcttagttcttgttaatatttaacatgtattttagatgcaaggctcaaatacatttttttatgattt

Transcript

scaffold2.g25.t1

ctgacgaagagcctcgaagagcgcgcagtgattggcagaatttaactgatcacatgcaaactaaaatttcagctccgatagcgcgaccgcaaAATTTCATCGATTTCATGCACAAAGTTTCGTTCAAAGACCTTCAACAAGTTTTGCACTCCAGTATTCAAGTTTTATCTTATCTGGCCACATTGGAATGTCCACATGATAACTTCAGGCATGATGGAAAATGCATAAGAGCTTTGGCTTATGAGGACTTCATCGATTTCATGCACAAAATTTCGTTCAAAGACCTTCAACAAGTTTTACACTCCAGTATTCAAGTTTTGTCTTATCTGGCCACATTGGAATGTCCACATGATAACTTCAGGCATGATGGAAAATGCATAAGAGCATTGGCTTATGAGGGGATTGAAGTCATCTGCACAGAATTTCATGGTGATGTTGCAAAGGTTTCTCGTTGTGTGATGAATTGTTGTCTCACAAGTGTCCTCATGCTTCATGATGGTAAACCAGTGACAAGTGCCACTATTCCAAGAGCCCTCCAGAGTGTCAAGAATGATGCTATTGATTTCGTTTGCAATCTTACAAAGGGAAGCCCAGTAATTGCAGAATCTGTGCGCGTGCTTTTGCAAAATATTTGTGTCAAGTGTCCTGAGCGAGCTGAATACAGAAACATTCTGTCATTGGATATCTGCAAAATTATTCGAGTTCTTCCTGTTAACATCCGAGAAGTTGTTATCAATTGGATAAAGAAATATTCAAGAAATACCAAGATTGGTTACAGAACGTTTTCAGTGGACATCATCAGCAAGTATTTGATCAGTGACAATGTTGTCGAGAATAATCAAGATCTGCAAACTGATGGGATTTCATGTAACGTCACTCTTCTTCAAGCCGTGGTTATTCGATGCTCAGACAGATCACCTACAGTTCGAGCTAAAGCCTTGTCTTGCCTTCACCAAGTAGCCTGTTCAACACAACAAAATGTAATTGCCGCTGTGAAGGAGTCACTTTCCAATTCAGTCAATCCATCCAGTTTGTTCCAATCACAAAATATAACAAGAGGTGGAAACCCTGAAAGTCGCACTGCCGAAAGGAGTACCTTGCTGGACTTGATAAGGCGTCGTATCAAAGATGATAAAGTACATGTGAGGAAGGCAGCCATACAGGCTCTGGAAAGTTTATCAAAGTTGATCGAAGATGGCTTGAATGAGGAGGATATCAGCTTGATTCACGAAAGATGTATGGATCCCTCCCTATCAGTACGAAAGCAAGCTGTTCAATCTCTTACGCAGCTGTTGGAATATGCCCCTACGAATGCTTTGCTTCAAAAATTATGGCTGAACGGTGTACTGCCAATGGTATCAGACAGGGAAACCACTGCACAGGAAAAATGCATCAGTTTGCTGGATGATCTTATACTCTCCAATATTGTGCCATTCGATAGAAGCACGAGCCCCGAACAAATTTTAACGTGGAATCTTCTTGAAACAATTGCTGGAAGCGAAGGCCAAGAATTGAGTCAATACTTTGACATTATATGTGAGAACTGGGGCAAGCAAGGAAAGTTCTCTGCGAAATTGGCAAAAAATGTGCAAAGTCATCTTGAGACGAGAAATAGCAAGGCTGCTTGGCTGTTCATATCTGCCATATCATCATCATGCGACAAAATCGACCCCAAAATCATTAGTGAATATTGGTTTAAAAATATCAAGGATAGTTCATGCTCTGATGTGGTCACGATGTCGAGAATATTGAAAACGATCAATACGATATCACATAAATTGGCACAAGAAATAGCTACTCGTCTGCTCGATGATATCCAGCTGAGGATCTTCAGATTCCGATGTCCTCCAGAACTGATTGCATTGTGTGTTCAATGTCTCTCAAAGTTATTTGCTCGCGCTCCTGGTGGTGATGAAAAGTTAAGAGAATGGTGTGAAAGTGTGTTGGCCATTTGCGAAGAAGATATTTCGAAAAGTGTCTTGGGAACAGAGCATGCAATACCCATTGATAAGATTGAAACAGCAAAGAGGCTGGTAACACTTGGTGAAATTGCCCAGCTTTGTCCTTCAAAAACTAATGAAAGGATGTTCATGATGGTCCAGTCACTACTTTTGCCAACTCCGTCTGAAAAAGGAAACAGTGATGAGAGTGCGGCAGCCATTCAAAACCTAGTCATCTCATCTACAACCAAAGCCTATGCGTTCACGACTCTCGGGAAATTGTGCTTGCAAAACGAAGGCTTGGCAAAGAAATGCGTCGCGTTATTAGCACGAGAATTGGAAATGTCGAAAGATGCTGCTGTTAAGAATAATATTATTGTGGTGTTATGCGATCTTTGCGTCAGGTACACAAATCTTGTCGATAGATACATTCCGAATATCGCTGCTTGTCTTGCGGATCCTGAACCGATCGTGCGTAGACAAGCTATTACACTTCTGACACATCTCTTACAGGAAGATTTCGTGAAGTGGAAAGGATCTCTCTTCTTTCGGTTCATCACAGCTTTGGTCGATGAAGACACAGACATCAAACAATTTGCTTACAATCAATTCAAGCAGTCAGAGACTGAAAGGAAGAGATTTTCCCTCGCTGGTGACCAAAATAAAGGGAAACGCATGCAAATTTACACTTTCCTCCTTCAAAATATGAACGATGAGCAACGGTTTAAGTTAACTGGAAAGTTATGTGAAGAGATTTTTGGACCGATCGTTGATGATTCATTTTTGGTTGATGCGCAAAGTCGACCTTTGATTGAAGATGCATTTGGTCTGATCAGCTGCCAGGAAATAAAGATTTCCTCAGCAAAATCAAAGGCAATTGACCCCGATGTCGACGAGATGATGGAAGAACAACAAATAGCTGCAGTAAGATTGCGGGCCAAAGTTATCAGTGCCATTGTGAAGAAGAATATGATTGAGAACATTTTCCCAACAATTATCTCACTCAAGAAAAGGTTCGAGCAAGAGAAATCGCCACTTTTGCGTGATTTGATGCGCTCTTTGAAAGAGATTATGGCTGACTACAAAGCAGAGGTGCAGGACGTTCTAGGCGCTGACAAGCAGTTAGCCAATGAAATCGCATTCGACTTGCGAAAATACGAAGAAAGACAACGCGAGGCCGCAATGGCTGCCGCTGCACAGCCAATGACGCCAGTCAGAAATGCACAGCCGCAAGTACAGGGTTCTGAGGGAAGACTACAGCCAGGACCAAGAACACCACTTGCCACAATACAGAGTCCTCATCCAATGGTTTCTCCTCGTGTCAACTCTGCAATAACCCCTCGAAATGGCTCGATGTTCACATCACCAAAACTGAAGACCCTAACGAACGCAAATGTGACAATTGGTGCTAATGGAGCTTCTCAATCAGTTCCTTTGAACGTTAGGCCACCGCCCTCAGCTGTCAATCGCAGAAATCTTGCAGCTACAGCCCTTCTGAATTCGGCCAAGAAAGTTATGGTTAGATTGCAAAGGCTTTCCATTTCCAAGCAGATCTCGATGACCCCCGAAAACACTGAGACTCCAAGAGCAATGTCCAAAACACCATTACCCCCGTCCTATCAGCTCCCAACACCAATGGTAACTGAAAATGGAGGAAATCCTTGTGCTAGTGAAGTCGTCCAGAAAACACCTGCTCCAAGCCGGAGAGAAACATCAGGAATGCTTATTCCAAAGGGAAGTGATCAAGAGTTTATCGATAACAGAGCAATCAGTACTCCTCAAGGCAGTTTATCTCATATCTCGTTCTTGGCTCCTGCTGACATCAGCATGATTCCGATCGCCCAATCACCTGTACCTGTCAAGATCACAAGACTCACAAGGAAACAAGGAAGAGTTGCCCAAGGACGAAATGGCGTTGAACATGTTATTTGTATGCCTTCACCTGATAAACCGTCTGCAAAGCCGAATCATTGGAATGTACAGAGCCCGGCCCGATGGAACAAGCGTTAAGAATTGAGCGAAACTCTGAATAATTCTGGATTACTGGGTGAGTCCGACTAACAGAATGCATTTGTCAAGTTATACCGGGTGTCCCAGAAAAAATACTCAGATTTGGTTGGGTGCAACGACGTGGAAGTCGCTTTATCAATGGCTAATAACTCttaaaggggcagtcagacgtgatgttgcgcgggacatttccattgtatttgcatgaaaagtgcttaggcctagcatcgactcgtcaatggagattttgaattggattatcgcacatttcaatccatctccatcgacattgttcttgacaatctcaaggatttaattgacagatattgttcgtctatgtcgatttcatgtatttgcaaagttattttgtttatcacacattcctgaaagtcgtaaacagagattttgcagaagcaactttgaagctgcgaagagataatctacaagtcgaagtgggcaagaaactccccaaagaatctggtttttgagtcagatttatgatgttaggtgaaaccgaaaggtgaatagaaccttctcacactctactggattcattgctcaattaatttcatcagaattacagcgaacaaagaggtacagtagacatgttttggtatttaggcctatacgaattggattgttacacgcagaatctgatacccgcgtttcgcgtctgactgccccttTAAGATGTTCCTCTAAAGTTAACTTGAACATAGATACCTCATTTGTTGGTACTTTGGGAGCAGAGATAGTAGTCTTGAAAGCTCAAAACTAGTGTCCACCAAACCAGAGCTTTGGCATTGTGGCCTAAGCAAATCTTCGAAGACCGAATTATTGTGAAGTCTTGAAATGACTTTGAATTTGTGGTAATCTGTGCTTTGCAAGCTACCTGGTTTTGGAGTATACTCATATTTGCATCCCTGTAAATTGGCAGACGCATTTTACGTTTTTTTTTACTTTTCTGCTAAATTAATTGGACTAGCTAATTAAACCTTTTCTTGCCTTTCAAGAAGTAAACCCAGTGGTCCGCCTTGAGTGGTGTAACTGAACACTTTAGTACATCTTAGGAAGCTTAGTTCTTGTTAATATTTAACATGTATTTTAGATGCAAGGCTCAAATACATTTTTTTATGATTT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12765 all species →	Cohesin_HEAT	HEAT repeat associated with sister chromatid cohesion	Repeat	Interproscan
PF12717 all species →	Cnd1	non-SMC mitotic condensation complex subunit 1	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026003 all species →	Repeat	HEAT repeat associated with sister chromatid cohesion protein	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR032682 all species →	Domain	Condensin complex subunit 1, C-terminal	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR026971 all species →	Family	Condensin subunit 1/Condensin-2 complex subunit D3	Interproscan
IPR021133 all species →	Repeat	HEAT, type 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14222 all species →	CONDENSIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000779 all species →	Cellular Component	condensed chromosome, centromeric region	Interproscan
GO:0000799 all species →	Cellular Component	condensin complex	Interproscan
GO:0007076 all species →	Biological Process	mitotic chromosome condensation	Interproscan
GO:0010032 all species →	Biological Process	meiotic chromosome condensation	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11491	NCAPD3; condensin-2 complex subunit D3	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.