Gene detail

Detailed information of scaffold2.g288.t3 in Aurelia aurita

Genomic Location: scaffold2:3653041...3669831
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI1 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold2.g288.t3

cgagcatgttcatggcggcagaagaaggaagccaaacaaatgcagagcaatttgaattaatgtgattttgatgcttgaagaatgggaccaccatctttgaaaacgaatttcagtattaaaaacaagctagaagcattctacactggtggaaaagtccaattttctgctgatggagaatattgcttttgtgcttgcggaaacaaagttcaagttctaaacacaaaatctggttgtattttcaagtcattatctgaggatgatgatgaaataacaagctttacactgagccctaacgatgaggtattggttactgctagcagaagcttgttattacgccaatgggattggagaaatgagaaagtcacaagaaaattcaaagcagttcatagctcacccattgtttgtatggtctttgatcctacatcaacacttctagctacaggttcaacagacagcacaataaaaatatgggatattgtcaaacagtattgcacacataacttccgtggttcacaaggagttgtccactttgtccaattccatcctgacccagagaaactgatgttattttcatcatctattgattgcaaaattcggatatgggatctgaatacaagcaggtgtgtttcatcgctagagggtcattttagtccagttacatcgctgacttttcttgaagaaaatcaaaatatgatcagttctggtcgcgataaagttgtcatcttctgggaccttacaacacgatcattaatcaagacagtaccggtttacgagtcgatcgagtcagtcgttgccctccctgaggctgctgagtaccaatggctcaaaaatgaagaagataagaaagagaagatatttattactgctggggaaaaaggtaccttacgcgcttggagctaccccgccggcaaatgcctctattcaaaacaatcaactgcagggatcgaacaaagtgaacacgctgaagactttgcggccccgtccattgttcagtgtatgctacatgaaatacttggatgcgttgtcacaataacatatgatcacaatatcatactgcatgatttgaaaacattgaacatatcaaaacagtttgttggacactatgatgaaattctcgatgtgaaatttgttggtgaaaatgactctttgctgtctatcgctacgaacagtcctcaagtgaaggtcattgacagggagaccatggattgtagaatcctaaatggtcatactgaaactgttatgtcgcttgatgccagttttgatggaaaatacattgcctcttgttcaaaagacaacagcatcagagtttggaagatacaagatgataaaacatttaaatgtgttgcaactggtgttggacatactcgtgctgttggtgctgtttcatggacaagattgtatcagtttcccactattaatttaggattcagttggaaacagaaactcaacgaattatctcgtaactggcagtcaggatttaacaatgaaatgctggaaaataccacaaatatttgaggatgacaatttggcacgactgtctgcaacttggacctcaatagcacacgacaaggacatcaactctgttgcattttcaccaaatgacaagcttgttgcttctggttcccaagataaaactgcaaaactttggttagtctcagatggaagtctacatggtactctacgaggacacaaacgaggcgtttggtgtgtggtgttctcgccagttgacaaatgcttagcaactgcatcagcagactcgacaatcaaaatatgggccattcaagatttaacttgtgtaaaaactttggaaggtcacaccaactcagtgttgaagttgcagttcatgacgagaggcatgcagatcgtatcaagcggatctgatggacttatcaaagtctggaacgtcaaatcaaatgaatgtgtcaaaactctagatgagcacacagacaaggtatggtcattagcattgaataaaactgaagatacgctggtaactgggggaggcgactctgtcctgaatctctggaaggatgtaactgaggaggagaggttaatggaggaagcaaagcacgacgaattgattttgaagtaggttttcgttttcagttatacaaaatttatttattttttagaggtgataagattttttctggattttgttaaagcttccaagttaccgatcagccttttgctgcgatgatatagggcctgaaaatagaagccaagagactgt

Transcript

scaffold2.g288.t3

CGAGCATGTTCATGGCGGCAGAAGAAGGAAGCCAAACAAATGCAGAGCAATTTGAATTAATGTGATTTTGATGCTTGAAGAATGGGACCACCATCTTTGAAAACGAATTTCAGTATTAAAAACAAGCTAGAAGCATTCTACACTGGTGGAAAAGTCCAATTTTCTGCTGATGGAGAATATTGCTTTTGTGCTTGCGGAAACAAAGTTCAAGTTCTAAACACAAAATCTGGTTGTATTTTCAAGTCATTATCTGAGGATGATGATGAAATAACAAGCTTTACACTGAGCCCTAACGATGAGGTATTGGTTACTGCTAGCAGAAGCTTGTTATTACGCCAATGGGATTGGAGAAATGAGAAAGTCACAAGAAAATTCAAAGCAGTTCATAGCTCACCCATTGTTTGTATGGTCTTTGATCCTACATCAACACTTCTAGCTACAGGTTCAACAGACAGCACAATAAAAATATGGGATATTGTCAAACAGTATTGCACACATAACTTCCGTGGTTCACAAGGAGTTGTCCACTTTGTCCAATTCCATCCTGACCCAGAGAAACTGATGTTATTTTCATCATCTATTGATTGCAAAATTCGGATATGGGATCTGAATACAAGCAGGTGTGTTTCATCGCTAGAGGGTCATTTTAGTCCAGTTACATCGCTGACTTTTCTTGAAGAAAATCAAAATATGATCAGTTCTGGTCGCGATAAAGTTGTCATCTTCTGGGACCTTACAACACGATCATTAATCAAGACAGTACCGGTTTACGAGTCGATCGAGTCAGTCGTTGCCCTCCCTGAGGCTGCTGAGTACCAATGGCTCAAAAATGAAGAAGATAAGAAAGAGAAGATATTTATTACTGCTGGGGAAAAAGGTACCTTACGCGCTTGGAGCTACCCCGCCGGCAAATGCCTCTATTCAAAACAATCAACTGCAGGGATCGAACAAAGTGAACACGCTGAAGACTTTGCGGCCCCGTCCATTGTTCAGTGTATGCTACATGAAATACTTGGATGCGTTGTCACAATAACATATGATCACAATATCATACTGCATGATTTGAAAACATTGAACATATCAAAACAGTTTGTTGGACACTATGATGAAATTCTCGATGTGAAATTTGTTGGTGAAAATGACTCTTTGCTGTCTATCGCTACGAACAGTCCTCAAGTGAAGGTCATTGACAGGGAGACCATGGATTGTAGAATCCTAAATGGTCATACTGAAACTGTTATGTCGCTTGATGCCAGTTTTGATGGAAAATACATTGCCTCTTGTTCAAAAGACAACAGCATCAGAGTTTGGAAGATACAAGATGATAAAACATTTAAATGTGTTGCAACTGGTGTTGGACATACTCGTGCTGTTGGTGCTGTTTCATGGACAAGattgtatcagtttcccactattaatttaggATTCAGTTGGAAACAGAAACTCAACGAATTATCTCGTAACTGGCAGTCAGGATTTAACAATGAAATGCTGGAAAATACCACAAATATTTGAGGATGACAATTTGGCACGACTGTCTGCAACTTGGACCTCAATAGCACACGACAAGGACATCAACTCTGTTGCATTTTCACCAAATGACAAGCTTGTTGCTTCTGGTTCCCAAGATAAAACTGCAAAACTTTGGTTAGTCTCAGATGGAAGTCTACATGGTACTCTACGAGGACACAAACGAGGCGTTTGGTGTGTGGTGTTCTCGCCAGTTGACAAATGCTTAGCAACTGCATCAGCAGACTCGACAATCAAAATATGGGCCATTCAAGATTTAACTTGTGTAAAAACTTTGGAAGGTCACACCAACTCAGTGTTGAAGTTGCAGTTCATGACGAGAGGCATGCAGATCGTATCAAGCGGATCTGATGGACTTATCAAAGTCTGGAACGTCAAATCAAATGAATGTGTCAAAACTCTAGATGAGCACACAGACAAGGTATGGTCATTAGCATTGAATAAAACTGAAGATACGCTGGTAACTGGGGGAGGCGACTCTGTCCTGAATCTCTGGAAGGATGTAACTGAGGAGGAGAGGTTAATGGAGGAAGCAAAGCACGACGAATTGATTTTGAAGTAGGTTTTCGTTTTCAGTTATACAAAATTTATTTATTTTTTAGAGGTGATAAGATTTTTTCTGGATTTTGTTAAAGCTTCCAAGTTACCGATCAGCCTTTTGCTGCGATGATATAGGGCCTGAAAATAGAAGCCAAGAGACTGT

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19854 all species →	TRANSDUCIN BETA-LIKE 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000472 all species →	Biological Process	endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0000480 all species →	Biological Process	endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0030686 all species →	Cellular Component	90S preribosome	Interproscan
GO:0034511 all species →	Molecular Function	U3 snoRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold2.g288.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.