Genomic Location: scaffold2:53260...58674
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families
| CDS |
| scaffold2.g3.t1 |
| Transcript |
| scaffold2.g3.t1 |
| Protein |
| scaffold2.g3.t1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02661 all species → | Fic | Fic/DOC family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036597 all species → | Homologous_superfamily | Fido-like domain superfamily | Interproscan |
| IPR011990 all species → | Homologous_superfamily | Tetratricopeptide-like helical domain superfamily | Interproscan |
| IPR003812 all species → | Domain | Fido domain | Interproscan |
| IPR040198 all species → | Family | Fido domain-containing protein | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13504 all species → | FIDO DOMAIN-CONTAINING PROTEIN DDB_G0283145 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K04095 | fic, FICD, HYPE; cell filamentation protein, protein adenylyltransferase | EC:2.7.7.108 | Chromosome and associated proteins | ko03036 | deepkoala |
Transcript abundance of scaffold2.g3.t1 across 29 RNA-seq samples of Aurelia aurita complex sp. Pacific. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| jellyfish mesoglea cells | 2 | 1 | 60.23 | 120.46 | |
| complete polyp induced 20h | 1 | 1 | 68.62 | 68.62 | |
| jellyfish canal system endoderm | 1 | 1 | 99.59 | 99.59 | |
| mesoglea cells | 1 | 1 | 74.77 | 74.77 | |
| bell edge (ectoderm and canal) | 1 | 1 | 45.12 | 45.12 | |
| tentacles (distal part) | 1 | 0 | 0.00 | 0.00 | |
| planula complete | 1 | 1 | 94.18 | 94.18 | |
| male gonad | 1 | 1 | 38.88 | 38.88 | |
| jellyfish ectoderm (upper bell surface) | 1 | 1 | 54.91 | 54.91 | |
| jellyfish ectoderm (muscle layer) | 1 | 1 | 34.94 | 34.94 | |
| complete juvenile jellyfish ~1cm in diameter | 1 | 0 | 0.00 | 0.00 | |
| strobila foot | 1 | 1 | 135.74 | 135.74 | |
| jellyfish ectoderm from the upper side of the bell | 1 | 1 | 0.25 | 0.25 | |
| complete juvenile jellyfish ~2.5cm in diameter | 1 | 0 | 0.00 | 0.00 | |
| jellyfish striated muscle layer | 1 | 1 | 94.28 | 94.28 | |
| strobila head | 1 | 1 | 60.34 | 60.34 | |
| jellyfish gastric filaments | 1 | 0 | 0.00 | 0.00 | |
| jellyfish bell edge | 1 | 1 | 31.69 | 31.69 | |
| jellyfish oral arm | 1 | 1 | 48.77 | 48.77 | |
| jellyfish bell middle part | 1 | 1 | 78.57 | 78.57 | |
| polyp ectoderm from body column | 1 | 1 | 87.02 | 87.02 | |
| polyp head region | 1 | 1 | 106.05 | 106.05 | |
| polyp endoderm from body column | 1 | 1 | 58.68 | 58.68 | |
| strobila non-segmented part | 1 | 1 | 134.40 | 134.40 | |
| strobila segments | 1 | 0 | 0.00 | 0.00 | |
| complete polyp induced 12h | 1 | 1 | 55.71 | 55.71 | |
| complete polyp not induced | 1 | 0 | 0.00 | 0.00 | |
| endoderm (canal system) | 1 | 1 | 81.62 | 81.62 |
Source: CnidoSite RNA-seq expression matrices (AAURI2_TPM,
StringTie quantification over 29 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
