Gene detail

Detailed information of scaffold2.g42.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold2:708732...716229
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold2.g42.t1

gcattcagctctattcactcagtcgaattcatatggacgtccttacagcactctattgcaaagatccattcaaaactacaaaagtattgaagctagaggccaaataactattggactgcaataatgaatcaactaaaaacggaggacagcttgaaacaagaggcgccttcggtgaccaaccaatcaactcaaggcaacacacctagttaccatggcaacacacaacaagtgtcacccggtgttgatgatgatgatgatcacgtgaaacgaccaatgaatgcctttatggtttggtctcgtactgaaagacgtaaactcgctttgaaatatccaaatatgttgaactgtgaaataagcaaattgctgggggcagagtggagcagaatgggagatgaggaaaagcaaccgtacatccaagagtcaaagcgactacggacgatacacagccagaagtacccagattattcttacaagccaagaagacggaaaagaaaagcacaacaaaatcacaatgtctatccaccaatcagcttccccgctggattcccaactggcggaccggtcctgcctccttatcagttctcagcctcatatccaaagatgatgtcagattcattccggttgcccggtactggagtagaatcgccttatcattcagcgatgtcggatcaagcaaaggccggaaattacttcaatccttcaaatatgccttcagcgcaggatatgaagtatttcatgccgggaacaaatggcagtgccttcccacctacttcgtcatttcctaatatgagcatgggaggctcaacatcagtgagtgctcctaataacatgtattcatcaaaccctggacaatacgctcctccgttgttcaaagatcacaccttctcgggtagcatttagcaagactatacgcattgagttcattcgcattattgcatcgaaaataacagccatatttaactaaacgttacagtagaaacccgcataaaagaacctaggttttctttgtgcagcctgaataggttcttaattaactggctgccattctaaattccagcttgtaaggttcttaaaaaggttcttatatacgtacaggtcttgcacacattaacactattttcctgctcaagaattcttaagaactcttcagaattgttgagaacatttgtgggtctgtaatgacacagttaaaccagcttttttaaccatgttaaattttaaccaatcaaatgcatttgacttgttggattgaccaattagaatgcaacataccataacctgattaacttcaactgatttaacttgccagtgtgaatagtgtataagaatacctgtttaaaaatcctttaatcctttgcaccaatgaagaagtctgatcagaatgtgaataatcctgaagaagcctaaaaattcttgtcattttaataatttacatgaaagctattatataagaacctttcccagtttcagcctagtagggattcttatttagggggtttaaaagatttaatttcagcctcaaggttcttatgaaaacaggttcttttatgcgggtttctactgtatatggggtaagttgcagttgcactgctaatgcaactttgttgttgtttaatgctaggctggttgtgtatactaatgtttgtatataattaaagtaataacgagctatagacattactgagacagaacttaaaagcaacatgcccaattcgtatccacagaaactttagtctatacagcgctcattacatctaatatcatacataaacagaggggctggggttcacagggggcactgtgccttgagtttcaagaaagtgcccttttctaacctaaaagtgtccattccctcagctctttttgctttttaaagtttaaaagtgccctgtagcccttctgaaaggtgtgcctcccaaactgagaactgtttctacgtacttgagttcacaggaaagggttggccagcatagccaggtgtgctacattatattcctagatctcaacgcttgccaagcttcccttgcgctgattatattttgtcgatctgcatggaaaaaagtctgtttcttaaactctactaggcgtcgcgaataaataaataaaatgcctctaattgcatctagtgatcaatttcttgttgagttgatctgaaatgcaaccccatgcaattgattgccatcatcgacattgataccttgcctttcaatgaagatgctttgctttg

Transcript

scaffold2.g42.t1

GCATTCAGCTCTATTCACTCAGTCGAATTCATATGGACGTCCTTACAGCACTCTATTGCAAAGATCCATTCAAAACTACAAAAGTATTGAAGCTAGAGGCCAAATAACTATTGGACTGCAATAATGAATCAACTAAAAACGGAGGACAGCTTGAAACAAGAGGCGCCTTCGGTGACCAACCAATCAACTCAAGGCAACACACCTAGTTACCATGGCAACACACAACAAGTGTCACCCGGtgttgatgatgatgatgatCACGTGAAACGACCAATGAATGCCTTTATGGTTTGGTCTCGTACTGAAAGACGTAAACTCGCTTTGAAATATCCAAATATGTTGAACTGTGAAATAAGCAAATTGCTGGGGGCAGAGTGGAGCAGAATGGGAGATGAGGAAAAGCAACCGTACATCCAAGAGTCAAAGCGACTACGGACGATACACAGCCAGAAGTACCCAGATTATTCTTACAAGCCAAGAAGACGGAAAAGAAAAGCACAACAAAATCACAATGTCTATCCACCAATCAGCTTCCCCGCTGGATTCCCAACTGGCGGACCGGTCCTGCCTCCTTATCAGTTCTCAGCCTCATATCCAAAGATGATGTCAGATTCATTCCGGTTGCCCGGTACTGGAGTAGAATCGCCTTATCATTCAGCGATGTCGGATCAAGCAAAGGCCGGAAATTACTTCAATCCTTCAAATATGCCTTCAGCGCAGGATATGAAGTATTTCATGCCGGGAACAAATGGCAGTGCCTTCCCACCTACTTCGTCATTTCCTAATATGAGCATGGGAGGCTCAACATCAGTGAGTGCTCCTAATAACATGTATTCATCAAACCCTGGACAATACGCTCCTCCGTTGTTCAAAGATCACACCTTCTCGGGTAGCATTTAGCAAGACTATACGCATTGAGTTCATTCGCATTATTGCATCGAAAATAACAGCCATATTTAACTAAACGTtacagtagaaacccgcataaaagaacctaggttttctttgtgcagcctgaataggttcttaattaactggctgccattctaaattccagcttgtaaggttcttaaaaaggttcttatatacgtacaggtcttgcacacattaacactattttcctgctcaagaattcttaagaactcttcagaattgttgagaacaTTTGTGGGTCTGTaatgacacagttaaaccagcttttttaaccatgttaaattttaaccaatcaaatgcatttgacttgttggattgaccaattagaatgcaacataccataacctgattaacttcaactgatttaacttgccagtgtgaatagtgtataagaatacctgtttaaaaatcctttaatcctttgcaccaatgaagaagtctgatcagaatgtgaataatcctgaagaagcctaaaaattcttgtcattttaataatttacatgaaagctattatataagaacctttcccagtttcagcctagtagggattcttatttagggggtttaaaagatttaatttcagcctcaaggttcttatgaaaacaggttcttttatgcgggtttctactgtaTATGGGGTAAGTTGCAGTTGCACTGCTAATGCAACTTTGTTGTTGTTTAATGCTAGGCTGGTTGTGTATACTAATGTTTGTATATAATTAAAGTAATAACGAGCTATAGACATTACTGAGACAGAACTTAAAAGCAACATGCCCAATTCGTATCCACAGAAACTTTAGTCTATACAGCGCTCATTACATCTAATATCATACATAAACAGAGGGGCTGGGGTTCACAGGGGGCACTGTGCCTTGAGTTTCAAGAAAGTGCCCTTTTCTAACCTAAAAGTGTCCATTCCCTCAGCTCTTTTTGCTTTTTAAAGTTTAAAAGTGCCCTGTAGCCCTTCTGAAAGGTGTGCCTCCCAAACTGAGAACTGTTTCTACGTACTTGAGTTCACAGGAAAGGGTTGGCCAGCATAGCCAGGTGTGCTACATTATATTCCTAGATCTCAACGCTTGCCAAGCTTCCCTTGCGCTGATTATATTTTGTCGATCTGCATGGAAAAAAGTCTGTTTCTTAAACTCTACTAGGCGTCGCGAATAAATAAATAAAATGCCTCTAATTGCATCTAGTGATCAATTTCTTGTTGAGTTGATCTGAAATGCAACCCCATGCAATTGATTGCCATCATCGACATTGATACCTTGCCTTTCAATGAAGATGCTTTGCTTTG

Protein

Gene family

Family type	Membership / link
Transcription factor family	HMG · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00505 all species →	HMG_box	HMG (high mobility group) box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009071 all species →	Domain	High mobility group box domain	Interproscan
IPR036910 all species →	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR050140 all species →	Family	SRY-related HMG-box transcription factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10270 all species →	SOX TRANSCRIPTION FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0009653 all species →	Biological Process	anatomical structure morphogenesis	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09267	SOX1S; transcription factor SOX1/3/14/21 (SOX group B)	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.