Gene detail

Detailed information of scaffold2.g96.t1 in Aurelia aurita

Genomic Location: scaffold2:1062790...1075815
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold2.g96.t1

cggttaaagttcctctttcagcgcgcccaagctgcaaatatgcatgggaggcaaagcaacatagggctatttggttacagcctgctgagctgtgctgatatcaatgaatgtagcagctcaccatgccaaaatggagcaacttgcaatgatttagtcaacagctatacatgcacatgcgttgctggatatactggaacaaactgtcaaactgatgtcgacgaatgtagcagctcaccatgtcaaaatggagcaacttgcaatgatttagtcaacagctatacatgcacatgcgttgctggatatactggaacaaactgtcaaactaatgtcaacgaatgtagcagctcaccatgtcaaaatggagcaacttgcaatgatttagtcaacagctatacatgcacatgcgttgctggatacaatggaacacactgtcaaactaatgtcaacgaatgtagcagctcaccatgtcaaaatggagcaacttgcaatgatttagtcaacagctatacatgcacatgcgttgctggatacaatggaacacactgtcaaactaatgtcaacgaatgtagcagctcaccatgtcaaaatggagcaacttgcaataatttagtcaacagctatacatgcacatgcgttgctggatatactggaacaaactgtcaaactaacacaaatgaatgcagcagtaacccatgccaaaacggtggaacttgcagcgatggaataaacatgtatacatgcagttgtgtgccaggatatgttggaacaaattgtcaaacagataacaacgaatgcagcagcagtccgtgccaaaatggcggaacatgcaataatttggtgaatagttatacatgcacatgtgcaggcggatattcaggcacaacctgtcaaacaagtaatgcttgcaatgttggttgtacatcgacatcatgcagtaatctaggatctggaacagccttcacgacacaaggacgcacaggtcgcacaggagtcgtacaaacatacacaattccaaacaccggtcaatacatcatcaaggtagcaggagcacaaggtggcacacacatcacaaattatggtacttatcctgggacattttgcggtgggaaaggagcctttatgcaaggaacgtttcaactctctgctggcactgttcttaatattgttgttggtcatcgaggaggaaattcagttgaagtaaaaggtgggcaaacaacgacacaaacagcagcgtcacttggcttgtcaattgaggataatgcgggaagtggcggaggcggagggagctttgtttacacgtcagctaatgtcttgttagttgcagctggcggaggaggtggtggatcagcggggtttcacggggttgcaggtagccattcagaagctggtacaagttctgtgggagcaaaccctggtcaagtaggcggtggtggtagcagtggccagccaggccagtgttgcagcagtggaagctaccatggaggaatgggtgctggatggctaggacaaagcgcaacccgtgatggtacttcacatggagaaagaggtggttcacgactacagaattgggtcggtggttatgcaggaaacatgaacgatggcagtaacggaggtccatctcctggggcagttggtggatttggaggcggtggaggtggaagtgaagacaatggtgcatctggagctggagggggctactctggaggagggtcaggatcgcatgaaaatcaagcaggaggaggtggagggtcatattgcagcactggaccagcgattagtggttcatgctctggagcaagtggtggaaactcgaatgattatggttatgtgactattacacaaacataaaaaagaaaaatcttagggtctgtgtagtaaggccggctggctcagtgatgagctggctctctttctgtcaagatcttgtttgtttcatcagacctctgtaaattcggatcgtactgggtgtctcacaaaaaagtacccccttttcactggaaaaaggaacaaaacgataatatatcgggaatttctgatttcaaagctaaattcgtcaatctttatttaaatgcacatacctagcataaatcgtccaccaaacaccggagatacaagctcccaaagtcaattttagagtgcaccagcatacaaatcaaatctttcaatagggcacagggaaacccacaaatcatcgaatttcacgcttattagccaaggacattgccgtattccgatcacatgaccgaaaataagctttttgagacaacttttcgagtaccttcacggaaatacaaatggaaattcggctaataaagacaacttttcgagtaccttcacggaaatacaaatggaaattcggctaataaagatacagagctggttttaccacgaatcgattctacaggccccactccatatttgctcttctgtatttggttaaaatctcattagtgaaattattacgggggtgtgcactccaagaaataattttttgaccc

Transcript

scaffold2.g96.t1

CGGTTAAAGTTCCTCTTTCAGCGCGCCCAAGCTGCAAATATGCATGGGAGGCAAAGCAACATAGGGCTATTTGGTTACAGCCTGCTGAGCTGTGCTGatatcaatgaatgtagcagctcaccatgccaaaatggagcaacttgcaatgatttagtcaacagctatacatgcacatgcgttgctggatatactggaacaaactgtcaaactgatgtcgacgaatgtagcagctcaccatgtcaaaatggagcaacttgcaatgatttagtcaacagctatacatgcacatgcgttgctggatatactggaacaaactgtcaaactaatgtcaacgaatgtagcagctcaccatgtcaaaatggagcaacttgcaatgatttagtcaacagctatacatgcacatgcgttgctggatacaatggaacacactgtcaaactaatgtcaacgaatgtagcagctcaccatgtcaaaatggagcaacttgcaatgatttagtcaacagctatacatgcacatgcgttgctggatacaatggaacacactgtcaaactaatgtcaacgaatgtagcagctcaccatgtcaaaatggagcaacttgcaataatttagtcaacagctatacatgcacatgcgttgctggatatactggaacaaactgtcaaactaACACAaatgaatgcagcagtaacccatgccaaaacggtggaacttgcagcgatggaataaacatgtatacatgcagttgtgtgccaggatatgttggaacaaattgtcaaacagATAAcaacgaatgcagcagcagtccgtgccaaaatggcggaacatgcaataatttggtgaatagttatacatgcacatgtgcaggcggatattcaggcacaacctgtcaaacaaGTAATGCTTGCAATGTTGGTTGTACATCGACATCATGCAGTAATCTAGGATCTGGAACAGCCTTCACGACACAAGGACGCACAGGTCGCACAGGAGTCGTACAAACATACACAATTCCAAACACCGGTCAATACATCATCAAGGTAGCAGGAGCACAAGGTGGCACACACATCACAAATTATGGTACTTATCCTGGGACATTTTGCGGTGGGAAAGGAGCCTTTATGCAAGGAACGTTTCAACTCTCTGCTGGCACTGTTCTTAATATTGTTGTTGGTCATCGAGGAGGAAATTCAGTTGAAGTAAAAGGTGGGCAAACAACGACACAAACAGCAGCGTCACTTGGCTTGTCAATTGAGGATAATGCGGGAAGTGGCGGAGGCGGAGGGAGCTTTGTTTACACGTCAGCTAATGTCTTGTTAGTTGCAGCTGGCGGAGGAGGTGGTGGATCAGCGGGGTTTCACGGGGTTGCAGGTAGCCATTCAGAAGCTGGTACAAGTTCTGTGGGAGCAAACCCTGGTCAAGTAGGCGGTGGTGGTAGCAGTGGCCAGCCAGGCCAGTGTTGCAGCAGTGGAAGCTACCATGGAGGAATGGGTGCTGGATGGCTAGGACAAAGCGCAACCCGTGATGGTACTTCACATGGAGAAAGAGGTGGTTCACGACTACAGAATTGGGTCGGTGGTTATGCAGGAAACATGAACGATGGCAGTAACGGAGGTCCATCTCCTGGGGCAGTTGGTGGATTTggaggcggtggaggtggaagtgaagacaatggtgcatctggagctggagggggCTACTCTGGAGGAGGGTCAGGATCGCATGAAAATCAAGCAGGAGGAGGTGGAGGGTCATATTGCAGCACTGGACCAGCGATTAGTGGTTCATGCTCTGGAGCAAGTGGTGGAAACTCGAATGATTATGGTTATGTGACTATTACACAAACATAAAAAAGAAAAATCTTAGGGTCTGTGTAGTAAGGCCGGCTGGCTCAGTGATGAGCTGGCTCTCTTTCTGTCAAGATCTTGTTTGTTTCATCAGACCTCTGTAAATTCGGATCGtactgggtgtctcacaaaaaagtacccccttttcactggaaaaaggaacaaaacgataatatatcgggaatttctgatttcaaagctaaattcgtcaatctttatttaaatgcacatacctagcataaatcgtccaccaaacaccggagatacaagctcccaaagtcaattttagagtgcaccagcatacaaatcaaatctttcaatagggcacagggaaacccacaaatcatcgaatttcacgcttattagccaaggacattgccgtattccgatcacatgaccgaaaataagctttttgagacaacttttcgagtaccttcacggaaatacaaatggaaattcggctaataaagacaacttttcgagtaccttcacggaaatacaaatggaaattcggctaataaagatacagagctggttttaccacgaatcgattctacaggccccactccatatttgctcttctgtatttggttaaaatctcattagtgaaattattacgggggtgtgcactccaagaaataattttttgaccc

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan
PF12661 all species →	hEGF	Human growth factor-like EGF	Domain	Interproscan
PF12810 all species →	Gly_rich	Glycine rich protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR051022 all species →	Family	Notch Signaling and Cell Fate Determination	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR013032 all species →	Conserved_site	EGF-like, conserved site	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24049 all species →	CRUMBS FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007157 all species →	Biological Process	heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0032991 all species →	Cellular Component	protein-containing complex	Interproscan
GO:0045197 all species →	Biological Process	establishment or maintenance of epithelial cell apical/basal polarity	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold2.g96.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.