Gene detail

Detailed information of scaffold20.g12.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold20:150739...160654
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold20.g12.t1

caaacatgcgagaagactgggaacaagggcatgttcattcttctgcgaactcattgagagtgaaacaaggaagcagaatcatcacgatggcgtcgactggcgatctgacagagaaaggcaaagaatcattcgaaggtttagtaacctgtcctatttgcatgaatcctttgatatctccaaagaccctgatttgtgatcactcattttgcaagcaatgtttagcagatattattggggcaagactaacaggaaaagatgttttgaggcctggggaactgtggattgactgtccaacttgcaggaaaagacattgcggattgaagtccattagcgatctcaggacaaaccacattatcactcaaatgctggatttttattacaagaacacggaacaaccagctggccttcagaggggacaatgttgctgcaaagnaagtgcgcctcctgcaacaaaaggacctttttggtttgtatcaaaaatcttttgggacacgtacctttcccctcccctctcccctgttactactctttgcattcatacactgcgccgtatctgtctatgtttgaccaaacatgcgagaagactgggaacaagggcatgttcattcttctgcgaactcattgagagtgaaacaaggaagcagaatcatcacacgatggcgtcgactggcgatctgacagagaaaggcaaagaatcattcgaaagtttagtaacctgtcctatttgcatgaatcctttggtatctccaaagaccctgatttgtgatcactcattttgcaagcaatgtttagcagatattattggggcaagactaacagaaaaagatgttttgacgcctggggaactgtggattgactgtccaacttgcaggataagacattgcggattgaagtccatttgcgatctcaggacaaaccacattatcactcaaatgctggatttttattacaagaacacggaacgaccagctagccttcagaggggacaatgttgctgcaaagattttgcaaagttcgcgtgtttaagatgccagacaaagtattgcaagacatgcctaaacaacataacagaaacaaactgcatgatggccaacaatcagaaagacgattcagtcaaatcaaagcatttcattgttggtatcatagataatgttgatatcaatgatgctcatggctcagacatctatcattgcaaagaacattatttatcattggattactactgcacactgtgcaaggatcccatctgcctggattgtttcataacaaagcattatagccatataacaaaaacgataaaggctgcgaaaaaagatgcgatggatgtgtgttatcacctgaaatcagtgcatactgagaacaaagccagtcgcaaagctataggagaagaaacccagaaggtcattgagaagaatgcaaatatggtaagaggggttcttgaaatgctacaaaatcagcagttgaaaatgcaacgtttcatgacatgtctgttcgaccaatctaaggtgtcatggaggaaaggcttagcaaaacgaatagatatgttcttaaaagaagctaccaaaatcaatacttctaatcctcgcatagattccttagcatcgttgatagataacccagaaggaaacgaccttcaaattgtttcaaatatcagtaatttgtatgctgcattgatgttatgtcagcaagaagcagatgaaatcgaagagacacttcagttcgtgaaagaaagacaatatttccatcgaaatatttcaccaaggataaatcatggcaaaattttccagtcgatggtcgagctattctccaacattaccttggatccaccgtcagcaggaaagcttttcccaataggaatcacattggagaagtatggaatggatgatgctcaataccgcaacataacgacggatgcaacagttcattcaaaaggatcgccaatcaacatttatgtggatgacccatctggtggtgcgaaagcatgcaaagcgtttggacctggccttgataaagctgtcgctggtgaaccctgcaaagtcactgtcaaaatacgaggtgctggatcaggccaactaggagttgctgttgaaggaccagcgaaagcagacttccagtgccacgataacggagatggtacatgtgacatcacttggtatccagttaagccaggagagtacgctcttcaaatcagactcgctgaagagcctattcctggcagcccctttatggttcatgtcatggcccccggagatgacgctgcaatgagcaaggctaaatttcaggaggcagcctgcacagttgggcaacaagcaagcttgactgttcgcatgaaggaccaagatgttcaattgactgcatctgttgtttcgccttcaggaaccgagcttgattgctctgttgttgaaattaaaaagaagagcttcgcagttgagtttgtgccgaaaaaactcggtgaacacagagtgaacgttttcttggattgtcatcatgtctctgaatgtccatgcaatttcgaagtacgaggatttagagacccgagcaaagtacgagcatatggtccaggtctacgatctggtgtcgtaaacgtggaatcagagtttactgnacggaaagacgaaaaacacagacagaagaaggcgcaggaaaatgagtcccgcagaaaaaaggcgacctaagaaggcacaaaggtaccgaagtacggggaagagaagaacgggtagtcaagtacgaacaaatgaaaaaagggagttaaaggaaaaggaaaaaggaagaatgagtaaaaggggggggggggggaggataatcgttggtgtcgaaggatctttgatccccgcgcagcaaattctcgtcaaagaaacggggaacaacatttactttacttagtcgaatacattcgcaaacaaaaaggcatatatgttttgcaagttacttggggaggattcgacattcctggctcacccttcctcttgaagaaagaaatcaaaatttggaatggcgctgactgcacatttagataatgtaggacgttcataccacatcttggatttttgtgataccatttcttttataccgttttcataccataaccggactttcgaaaatttctttcaaaatacttacctcgtgaaacacttgattagttgtacaaactctacagtgatattaggaggtccacatgtatgttctaattcttatacaaaaatgacagtgagtcgaattataggcattaaatatcaatttaccactgtgcctgcacataggttattttgtcaactgtaatattatgactgtggaactaaaacgagtgaccgaagagcttcaaaaacttgactgactaaacaacggttttagccacaaagctcacaggacgcatcagaaagctctcatcgagcggagttcaaattttgagacttcttctccacgcctattttcatttcaaacatcaaatcttgggtagttagggaccggtcattatttcttgccggggagggggtggaagaaatttgggaggggtgctaaaaatttttacctacaatcagttgcaaaattgttgagccattctaaaaaatatggtttttttgg

Transcript

scaffold20.g12.t1

CAAACATGCGAGAAGACTGGGAACAAGGGCATGTTCATTCTTCTGCGAACTCATTGAGAGTGAAACAAGGAAGCAGAATCATCACGATGGCGTCGACTGGCGATCTGACAGAGAAAGGCAAAGAATCATTCGAAGGTTTAGTAACCTGTCCTATTTGCATGAATCCTTTGATATCTCCAAAGACCCTGATTTGTGATCACTCATTTTGCAAGCAATGTTTAGCAGATATTATTGGGGCAAGACTAACAGGAAAAGATGTTTTGAGGCCTGGGGAACTGTGGATTGACTGTCCAACTTGCAGGAAAAGACATTGCGGATTGAAGTCCATTAGCGATCTCAGGACAAACCACATTATCACTCAAATGCTGGATTTTTATTACAAGAACACGGAACAACCAGCTGGCCTTCAGAGGGGACAATGTTGCTGCAAAGNAAGTGCGCCTCCTGCAACAAAAGGACCTTTTTGGTTTGTATCAAAAATCTTTTGGGACACGTACCTTTCCCCTCCCCTCTCCCCTGTTACTACTCTTTGCATTCATACACTGCGCCGTATCTGTCTATGTTTGACCAAACATGCGAGAAGACTGGGAACAAGGGCATGTTCATTCTTCTGCGAACTCATTGAGAGTGAAACAAGGAAGCAGAATCATCACACGATGGCGTCGACTGGCGATCTGACAGAGAAAGGCAAAGAATCATTCGAAAGTTTAGTAACCTGTCCTATTTGCATGAATCCTTTGGTATCTCCAAAGACCCTGATTTGTGATCACTCATTTTGCAAGCAATGTTTAGCAGATATTATTGGGGCAAGACTAACAGAAAAAGATGTTTTGACGCCTGGGGAACTGTGGATTGACTGTCCAACTTGCAGGATAAGACATTGCGGATTGAAGTCCATTTGCGATCTCAGGACAAACCACATTATCACTCAAATGCTGGATTTTTATTACAAGAACACGGAACGACCAGCTAGCCTTCAGAGGGGACAATGTTGCTGCAAAGATTTTGCAAAGTTCGCGTGTTTAAGATGCCAGACAAAGTATTGCAAGACATGCCTAAACAACATAACAGAAACAAACTGCATGATGGCCAACAATCAGAAAGACGATTCAGTCAAATCAAAGCATTTCATTGTTGGTATCATAGATAATGTTGATATCAATGATGCTCATGGCTCAGACATCTATCATTGCAAAGAACATTATTTATCATTGGATTACTACTGCACACTGTGCAAGGATCCCATCTGCCTGGATTGTTTCATAACAAAGCATTATAGCCATATAACAAAAACGATAAAGGCTGCGAAAAAAGATGCGATGGATGTGTGTTATCACCTGAAATCAGTGCATACTGAGAACAAAGCCAGTCGCAAAGCTATAGGAGAAGAAACCCAGAAGGTCATTGAGAAGAATGCAAATATGGTAAGAGGGGTTCTTGAAATGCTACAAAATCAGCAGTTGAAAATGCAACGTTTCATGACATGTCTGTTCGACCAATCTAAGGTGTCATGGAGGAAAGGCTTAGCAAAACGAATAGATATGTTCTTAAAAGAAGCTACCAAAATCAATACTTCTAATCCTCGCATAGATTCCTTAGCATCGTTGATAGATAACCCAGAAGGAAACGACCTTCAAATTGTTTCAAATATCAGTAATTTGTATGCTGCATTGATGTTATGTCAGCAAGAAGCAGATGAAATCGAAGAGACACTTCAGTTCGTGAAAGAAAGACAATATTTCCATCGAAATATTTCACCAAGGATAAATCATGGCAAAATTTTCCAGTCGATGGTCGAGCTATTCTCCAACATTACCTTGGATCCACCGTCAGCAGGAAAGCTTTTCCCAATAGGAATCACATTGGAGAAGTATGGAATGGATGATGCTCAATACCGCAACATAACGACGGATGCAACAGTTCATTCAAAAGGATCGCCAATCAACATTTATGTGGATGACCCATCTGGTGGTGCGAAAGCATGCAAAGCGTTTGGACCTGGCCTTGATAAAGCTGTCGCTGGTGAACCCTGCAAAGTCACTGTCAAAATACGAGGTGCTGGATCAGGCCAACTAGGAGTTGCTGTTGAAGGACCAGCGAAAGCAGACTTCCAGTGCCACGATAACGGAGATGGTACATGTGACATCACTTGGTATCCAGTTAAGCCAGGAGAGTACGCTCTTCAAATCAGACTCGCTGAAGAGCCTATTCCTGGCAGCCCCTTTATGGTTCATGTCATGGCCCCCGGAGATGACGCTGCAATGAGCAAGGCTAAATTTCAGGAGGCAGCCTGCACAGTTGGGCAACAAGCAAGCTTGACTGTTCGCATGAAGGACCAAGATGTTCAATTGACTGCATCTGTTGTTTCGCCTTCAGGAACCGAGCTTGATTGCTCTGTTGTTGAAATTAAAAAGAAGAGCTTCGCAGTTGAGTTTGTGCCGAAAAAACTCGGTGAACACAGAGTGAACGTTTTCTTGGATTGTCATCATGTCTCTGAATGTCCATGCAATTTCGAAGTACGAGGATTTAGAGACCCGAGCAAAGTACGAGCATATGGTCCAGGTCTACGATCTGGTGTCGTAAACGTGGAATCAGAGTTTACTGNACGGAAAGACGAAAAACACAGACAGAAGAAGGCGCAGGAAAATGAGTCCCGCAGAAAAAAGGCGACCTAAGAAGGCACAAAGGTACCGAAGTACGGGGAAGAGAAGAACGGGTAGTCAAGTACGAACAAATGAAAAAAGGGAGTTaaaggaaaaggaaaaaggaagaatgagtaaaaggGGGGGGGGGGGGAGGATAATCGTTGGTGTCGAAGGATCTTTGATCCCCGCGCAGCAAATTCTCGTCAAAGAAACGGGGAACAACATTTACTTTACTTAGTCGAATACATTCGCAAACAAAAAGGCATATATGTTTTGCAAGTTACTTGGGGAGGATTCGACATTCCTGGCTCACCCTTCCTCTTGAAGAAAGAAATCAAAATTTGGAATGGCGCTGACTGCACATTTAGATAATGTAGGACGTTCATACCACATCTTGGATTTTTGTGATACCATTTCTTTTATACCGTTTTCATACCATAACCGGACTTTCGAAAATTTCTTTCAAAATACTTACCTCGTGAAACACTTGATTAGTTGTACAAACTCTACAGtgatattaggaggtccacatgtatgTTCTAATTCTTATACAAAAATGACAGTGAGTCGAATTATAGGCATTAAATATCAATTTACCACTGTGCCTGCACATAGGTTATTTTGTCAACTGTAATATTATGACTGTGGAACTAAAACGAGTGACCGAAGAGCTTCAAAAACTTGACTGACTAAACAACGGTTTTAGCCACAAAGCTCACAGGACGCATCAGAAAGCTCTCATCGAGCGGAGTTCAAATTTTGAGACTTCTTCTCCACGCCTATTTTCATTTCAAACATCAAATCTTGGGTAGTTAGGGACCGGTCATTATTTCTTGCCGGGGAGGGGGTGGAAGAAATTTGGGAGGGGTGCTAAAAATTTTTACCTACAATCAGTTGCaaaattgttgagccattctaaaaaatatggtttttttgg

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13445 all species →	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan
PF00630 all species →	Filamin	Filamin/ABP280 repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR017868 all species →	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR001298 all species →	Repeat	Filamin/ABP280 repeat	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR027370 all species →	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR044801 all species →	Family	Filamin family	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR38537 all species →	JITTERBUG, ISOFORM N	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12021	TRIM45; tripartite motif-containing protein 45	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.