Gene detail

Detailed information of scaffold20.g2.t3 in Aurelia aurita

Genomic Location: scaffold20:19756...38090
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold20.g2.t3

caggacttgtttcttgtgttgtggactcaactagtgcagcaaatttggaggcgttatcaatatgttgcagattattgcagaggttgcacacttggtgtaggattgagactacggaggatgctacttcgcttacaaaattacaattcaaaatcccgacaaacaaagctctttgactgagctgaaaagactttggggacaagcgttgtatttctgcaatgaattagcaaagagttatcgaaggcttttgcaagcacaacgtgcagtcatgatcacactaatgaactgcaattcaagtttgatgcaagaaaaggaagcaatgattgcggaggcgcacaagctcagcgctaatattgatatgttcattgacaggaaagtagcgatgcacaaaattaactcgaattttgaaaattcgcttcaaaatcccgacaaacaaagctctcttactgagctgaaaagactttggggacaagcgttgtatttctgcaatgaattagcaaagagttatcgaaggcttttgcaagctcaacgtgcagtcatgatcacactaatgaactgcaattcaagtttgatgcaagaaaaggaagcaatgattgcggaggcgcacaagctcagcgctaatattgatatgttcattgacagctgtaaggatgatttgcaacattttcaccaaaccggattcaatagaaattcagcaaataagccatatgcagatgaaataaaaaagatgatcgacgaagcagaaacatatcaagagaatttagttgaagacattggacgacaagtcacaaaagcgcagagagaacttatagatctgaaaaatagcccacttgtcacaaaccaaaatactgaattggaccaaatagcaaaagctgcaaaaacagaatacgaaaaacttgaaaaagcttcgcaagatccaccaaacagccaatacatggcgaatctgattctacgagttttaaccgtttgggaaagactggagtctaatttttatgcccagttagggaaagtgatgatatgcaaatcaaatatggaagaacttcttccagaagtgcaaggtgtcataacaaggctaaaaagacagcgagaaggcctcaaaacgatgatgaaacgaaaacaagaaatgacttggaaaacgttgactttaggatcgactcctgcaggtttgttgtcatcccctggttatgattctgtgacgtatgcactgacatcaatcctggaagaagtacagaaagaaccaatggatcccgtatctatcgtcgatgaaaatagaaccaatttagataggcttggtgaactggttcagagtttgaaatctgttgcctctttggaggaaaattcggatgcattcttctctggtccaagacgacgaagtgctaacgcaactttacaaagagttcgtgaagaaaacccatttaattttgaacaagccacgaaacgtaggacgattagtgatccgcaatggaggaggacatcaccgacaaagtaggtaaaattaaatatagcgattgtaagtaaagtcaatagtatgagactttatagattagagtctcgttttaggaacgaggtaactagattcctcccaaactttatggaggcaatagcttttttataattttgatttgactttaaaggggctgtacccgggggggggggtacataacatgttgagggtacgtgtatatgggtgggtttttggatccaaaattctccaaaacaagggtcatttttttggcatatttgctttaaacatgggtcggtttggctgaaatcagcaaagatttgtgcaagtttttagtaaagaaggggcgcatgtcatagaatttcttcagcctgcagtgggttttcgtgtgtttaggctaaacacatctaaaccctgtggctccaaatccagctgtagctctaaaatcgttgatggtatgaaaaatcagattgcactggctaattctacggagttcaatcaaacctttagaaaatatgttcatttgcaatgtatctgctgctatttgcctgcattggggagagaaagtcgtggcctttggaaatttagcttatgcagcctttttatagtatgcccaatgacatcaaaatcatttgaattttggattggattggaagagtttttttaaacttttttgccttcataaagttttagggtgctttaaattgtattcgtggtatttctaattcgtggtagcttttagacttaacgaatacatgtgctatttcaaattcccatagtatttccaacaaacttgtgtccccatgagcaatcaggaaaaccctacatctttttgcaagatttgattttcttttgtaaaagaatcaggatttttcttgttttttgataatatttaaacggttgatcaagaacaagatgaaccgaaatcccaatttattaaaactgtgcaaggcccagcaagatgatctgagggctaattttctggttatttactattgacccatacctctataattacttgtcaatttctttgataaagtagctggtgaaagtttttatttaatgaaggtagacatgtcaaaacgaacagaaaaccatttaagtgagtacatctggacctaaatatcgtttttgcctcttggcttggaagtcgcattgataaacattgttgccgatggtttctgactttccaacactttgatcgcgtttgatttgccacgtctgaccgaaaccccacattttcaccaatttgcattcacataaaattgttcgaaaaatcgctagggtaggctaagtttttggcagcagatgtttggatcccatctttcatattgctaattttattttcttatttccttttgaaattttttgatcgcgatgtacatgtattcattattttttttcatctgctgtttatactaaacagtaacgagattattttttaatggagtcaccatctgatattttcctttccttatttagtttgtttatttcatcaaaaatgggccttattatagtagacgacaaaatattctcttcgatgaagaatcatcttggatgatgctgtgttctgatatgtcttcattttgcagcgtaaaaggctttaaaattgcagttttcttttgatctatcctcaaacttgctccaagtctatttcctgaaatccgtctgacagatccctttcgcatagttcccggatctgcaattccagccatgggcgttgagaaacgcggtagttattcctttaaaatgttttcctcctgtgttcctatgcccattcctccctgtgtccctatgcccgtgaaggttgttgttgttgtgcctggttttccttgttatccctttcacatagttcccggatctgcaattccaaccatgggcgttaagaaacgcggtagttattccttcaaaatgctttcctcctgtgttcctatgcccatttctccctgtgtccctatgcccgtgaaggttgttgttgttgtgcctggttttccttgtttccctgtgttctgatttaagcgacgca

Transcript

scaffold20.g2.t3

CAGGACTTGTTTCTTGTGTTGTGGACTCAACTAGTGCAGCAAATTTGGAGGCGTTATCAATATGTTGCAGATTATTGCAGAGGTTGCACACTTGGTGTAGGATTGAGACTACGGAGGATGCTACTTCGCTTACAAAATTACAATTCAAAATCCCGACAAACAAAGCTCTTTGACTGAGCTGAAAAGACTTTGGGGACAAGCGTTGTATTTCTGCAATGAATTAGCAAAGAGTTATCGAAGGCTTTTGCAAGCACAACGTGCAGTCATGATCACACTAATGAACTGCAATTCAAGTTTGATGCAAGAAAAGGAAGCAATGATTGCGGAGGCGCACAAGCTCAGCGCTAATATTGATATGTTCATTGACAGGAAAGTAGCGATGCACAAAATTAACTCGAATTTTGAAAATTCGCTTCAAAATCCCGACAAACAAAGCTCTCTTACTGAGCTGAAAAGACTTTGGGGACAAGCGTTGTATTTCTGCAATGAATTAGCAAAGAGTTATCGAAGGCTTTTGCAAGCTCAACGTGCAGTCATGATCACACTAATGAACTGCAATTCAAGTTTGATGCAAGAAAAGGAAGCAATGATTGCGGAGGCGCACAAGCTCAGCGCTAATATTGATATGTTCATTGACAGCTGTAAGGATGATTTGCAACATTTTCACCAAACCGGATTCAATAGAAATTCAGCAAATAAGCCATATGCAGATGAAATAAAAAAGATGATCGACGAAGCAGAAACATATCAAGAGAATTTAGTTGAAGACATTGGACGACAAGTCACAAAAGCGCAGAGAGAACTTATAGATCTGAAAAATAGCCCACTTGTCACAAACCAAAATACTGAATTGGACCAAATAGCAAAAGCTGCAAAAACAGAATACGAAAAACTTGAAAAAGCTTCGCAAGATCCACCAAACAGCCAATACATGGCGAATCTGATTCTACGAGTTTTAACCGTTTGGGAAAGACTGGAGTCTAATTTTTATGCCCAGTTAGGGAAAGTGATGATATGCAAATCAAATATGGAAGAACTTCTTCCAGAAGTGCAAGGTGTCATAACAAGGCTAAAAAGACAGCGAGAAGGCCTCAAAACGATGATGAAACGAAAACAAGAAATGACTTGGAAAACGTTGACTTTAGGATCGACTCCTGCAGGTTTGTTGTCATCCCCTGGTTATGATTCTGTGACGTATGCACTGACATCAATCCTGGAAGAAGTACAGAAAGAACCAATGGATCCCGTATCTATCGTCGATGAAAATAGAACCAATTTAGATAGGCTTGGTGAACTGGTTCAGAGTTTGAAATCTGTTGCCTCTTTGGAGGAAAATTCGGATGCATTCTTCTCTGGTCCAAGACGACGAAGTGCTAACGCAACTTTACAAAGAGTTCGTGAAGAAAACCCATTTAATTTTGAACAAGCCACGAAACGTAGGACGATTAGTGATCCGCAATGGAGGAGGACATCACCGACAAAGTAGGTAAAATTAAATATAGCGATTGTAAGTAAAGTCAATAGTATGAGACTTTATAGATTAGAGTCTCGTTTTAGGAACGAGGTAACTAGATTCCTCCCAAACTTTATGGAGGCAATAGCTTTTTTATAATTTTGATTTGACTTTAAAGGGGCTGTACCCGGgggggggggtacataacatgttgagggtacgtgtatatgggtgggtttttggatccaaaattctccaaaacaagggtcatttttttggcatatttgctttaaacatgggtcggtttggctgaaatcagcaaagatttgtgcaagtttttagtaaagaaggggcgcatgtcatagaatttcttcagcctgcagtgggttttcgtgtgtttaggctaaacacatctaaaccctgtggctccaaatccagctgtagctctaaaatcgttgatggtatgaaaaatcagattgcactggctaattctacggagttcaatcaaacctttagaaaatatgttcatttgcaatgtatctgctgctatttgcctgcattggggagagaaagtcgtggcctttggaaatttagcttatgcagcctttttaTAGTATGCCCAATGACATCAAAATCATTTGAATTTTGGATTGGATTGGAAGAGTTTTTTTAAACTTTTTTGCCTTCATAAAGTTTTAGGGTGCTTTAAATTGTATTCGTGGTATTTCTAATTCGTGGTAGCTTTTAGACTTAACGAATACATGTGCTATTTCAAATTCCCATAGTATTTCCAACAAACTTGTGTCCCCATGAGCAATCAGGAAAACCCTACATCTTTTTGCAAGATTTGATTTTCTTTTGTAAAAGAATCAGGATTTTTCTTGTTTTTTGATAATATTTAAACGGTTGATCAAGAACAAGATGAACCGAAATCCCAATTTATTAAAACTGTGCAAGGCCCAGCAAGATGATCTGAGGGCTAATTTTCTGGTTATTTACTATTGACCCATACCTCTATAATTACTTGTCAATTTCTTTGATAAAGTAGCTGGTGAAAGTTTTTATTTAATGAAGGTAGACATGTCAAAACGAACAGAAAACCATTTAAGTGAGTACATCTGGACCTAAATATCGTTTTTGCCTCTTGGCTTGGAAGTCGCATTGATAAACATTGTTGCCGATGGTTTCTGACTTTCCAACACTTTGATCGCGTTTGATTTGCCACGTCTGACCGAAACCCCACATTTTCACCAATTTGCATTCACATAAAATTGTTCGAAAAATCGCTAGGGTAGGCTAAGTTTTTGGCAGCAGATGTTTGGATCCCATCTTTCATATTGCTAATTTTATTTTCTTATTTCCTTTTGAAATTTTTTGATCGCGATGTACATGTATTCATTATTTTTTTTCATCTGCTGTTTATACTAAACAGTAACGAGATTATTTTTTAATGGAGTCACCATCTGATATTTTCCTTTCCTTATTTAGTTTGTTTATTTCATCAAAAATGGGCCTTATTATAGTAGACGACAAAATATTCTCTTCGATGAAGAATCATCTTGGATGATGCTGTGTTCTGATATGTCTTCATTTTGCAGCGTAAAAGGCTTTAAAATTGCAGTTTTCTTTTGATCTATCCTCaaacttgctccaagtctatttcctgaaatccgtctgacagatccctttcgcatagttcccggatctgcaattccagccatgggcgttgagaaacgcggtagttattcctttaaaatgttttcctcctgtgttcctatgcccattcctccctgtgtccctatgcccgtgaaggttgttgttgttgtgcctggttttccttgttatccctttcacatagttcccggatctgcaattccaaccatgggcgttaagaaacgcggtagttattccttcaaaatgctttcctcctgtgttcctatgcccatttctccctgtgtccctatgcccgtgaaggttgttgttgttgtgcctggttttccttgtttccctgtgttctgatttaagcgacgca

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18397 all species →	IKBKB_SDD	IQBAL scaffold dimerization domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041185 all species →	Domain	IKBKB, scaffold dimerization domain	Interproscan
IPR046375 all species →	Homologous_superfamily	IKBKB, scaffold dimerization domain superfamily	Interproscan
IPR051180 all species →	Family	Inhibitor of nuclear factor kappa-B kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22969 all species →	IKB KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008384 all species →	Molecular Function	IkappaB kinase activity	Interproscan
GO:0008385 all species →	Cellular Component	IkappaB kinase complex	Interproscan
GO:0018105 all species →	Biological Process	peptidyl-serine phosphorylation	Interproscan
GO:0033209 all species →	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0051092 all species →	Biological Process	positive regulation of NF-kappaB transcription factor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold20.g2.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.