Gene detail

Detailed information of scaffold20.g20.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold20:286535...353504
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold20.g20.t2

caacgaatgcattgggataatggcgaccatgataaaggaagggaagtttgcgatgtcttattatttcgattatgatatcactcctggatagagcatgataaagagaccatgacagaatgaaagctaaatgatcaaggtttattatgaaattatttattacattgtgcggtgaagaaaagttacactgaagctgtgtttttctggctttatttttgctgttgaaaacacaacgttatcggacatagccaacttaggcagagactattcaaagagttattgaagactaaagattgccaaataagagatactaagtgaagaaatatctacaaggtactggctggtgcttggtttggaggactggcgtaagctgcttagacttggtaacaatgtggcattggacgattgcatagatgcctgttccaaggccattacagctgatgatgaataatttgaaaagtgctgaattgattagagaattgaaggcagaaactgaaaagcttgtggagaaaaacagcatggtgattaaaccagaagagaatagcattggattggttaatttagacaatagctattgttttgagacaaaagagaatcaccttacaccattgagaaggaatgtaattccatatcctgaccacaattatggacaacaaccaccattgactccaccggaacaacatagtcctgatccaaatgaacaaactgacactggtaatgaggatgaagatgaggagggtgtaacaagatgtatatgtggatttgatcatgatgatggctacatgatttgctgtgatcgttgtgggtcttggcaacatattgattgcatggggattaagtctgacagtgtcccagaaagctatctatgtgatcgctgtgacccaaggcagttggatgctgaacgagcaagggccattcaacaaaagaagaaagatgctgtttcagatgatgatggtgatgatgataccgacactgaggaggagactggacaaacatacactgcaatttccaacaccccaacgagaattacgttaactgcaactgctgttattaagaagaaaggcaaaaatcgaatcaaaagtgcgaactcagaaggacagacgaaaaatcgaaagaaagtcaacagaaaaaggcaaagaacctcgaccggacaaattaatgaatcaacacttcgcttcgatagcaactcggttgaaagccatattgggcttgagaatttccaagagattgcagataatatttatgatgaggctgtacaaaatcttcgttttcagaataccgagaacgcaccggagtttgtcccgcaagaaacgaagaaagtttatgcagtttctcaagtgttggaaaatcgaaagggtttaatagcagttgaagaaattgaaatgggacaacgaattgctgaatacaaggggaatgttttacttcagtcaacttatgaagaatcgaatccatttttcaaaagagcatgcccatttttgttacactacaaccgaattgatcagctaggattggtggttgatgcaagaacgattggaaacgaggcacgatatgtcaggagatcatgtgatccgaattcagaggttatccatgtagtcactgatggaaaacttcatatattcattagcagcaaaagactattatccgcaggatccgagataacgattccatttgacttccctttggacacgtattcaggatatgtggaatgtgcatgcaatgaaccagcctgcttagcagtgaagcataatcagaaatttatgccccatggtgggagaaagagagccagattcacttcgacaacgaaccaagattcatccacgaggaattcagcttctgagaatcagatttacagcaaagtaccgcacggaccagggtcggattcggctcattcacagaccgcaacccatggaaggccagttatttcattcgaaaatatggttcctcaaagtgctgccgctcctagcaatgcagcccctgttccaaggcgcatcgcttcgtatacacctggatctggaaagaaaaggctcagcgtcagtaaaaaacgtccacgtgtgtcaagctgctcatctgatccattgtctcctgaaatcacaagctgcacaattacaacaacaccggtaactccttcgcaggagtacgttatccatacacatacgccagatcacaatggtttttacaagcagaagggaaagaaagatagggataatctctcgttgtccgttaatgttgacaaatcggcaccaatcttcagagatgcatgtcgcaaactacgaagagattacctggattctactgcagatagcccaacaccgccctctacccccggccaactgagccctgcctcaagtcattctcaggttgggctatcagtcgagacgtgcagtaatttagcatcgccgtccggtcaatttttatcatcttttgaacggcgacatatgctgaacggcctacttcaaatagctgatgagaatgatgagagtaattcgtgtgcagaaagtccgcatagcatgactgtcacaagtaatggactggttacatctgacgaagttatgggagatattgtggtccgggtcggtgtgcagcatgccccagccgggagaatagcaagcaggagaccgtccagagaagtttcctattttgggtctttgaaaaagcgatggctcattcaatatgacagacgtactcccatcgatatgcaacatatgaacggcgttgctccaatgacgcttactaatctcatgaatgacttcagtatccaaaaaagagccgaacatattgcgtcttgtgttttcaaaacacccaagagtttcattcctctgaagaaacgtagactaagagaggctatggtaaacgccgaaaaagaaacaatggaaacaaaggagcaaaattcagttgaactcgtaaatggcggtgattcctctcacattcacagcagatttgatgccttatcgagtgacgataaattgtcggaatcccctccaaaagtttctgaaaatattgaaattggtgtatcgaacactgcagaagttgtcaaagaaatttctgaagatgtgaaagatctcacagttagtactgaagatccactggttggaccaggatctaatttaaccaacgatacacttcctacaaatttgttccccgcgcagaccttactcagccaggcagtagttgagggtaaccaaatcgatttggcgaagactgaaccacatcaaaaagggccttctatcaaggctgacttgcgcaagactaaactggacaaaaaagagtccaatactgatgttgaggtcacgaattttattgataatcgtggagatttaccagtattacggaaagaagaaaaactggaggatgttaacttcaggatcaataatattgttgcgtctagtggagaacaaaatgctgctaattttactcaaaatgtaactgctgatgcccatatagctgcaagtatcgacacaacggatgtagctttacctgaaatgaggtcaaaaattgagtcacatgatactactgcattgtcacgtgataaaacagcagcttcattattggctggattgataaacgacaaggcagcgaattcttcacagttaaacaatggtatcgaatcggatacgaaacttggacgggacgaaccaaaagtgatccgcgatattgagttgcacacagtacaagtagatcgcaggcggacggaatctgtgcatcatatttacacgggccatcatactgttgttgataaatcacctggaacgaccaggcctgcaatttatacgtcggaaacgaacgttgataagccaatcgcgagaactgccgaggtttctctaccgattactttaacgaatgaaccgataatcaaaccgttatcaatcgtacgagatcctcgtctaagctcgtcctcgtcaagaagcagtcgggatagtttagataataatgtttttatgagatcggattcggtgagttctcttgaagatagctcagcacaaagacaggatttggatcgaaggataacgaatgacaagttggaggggacaccaaacactaaaaagaagatgtctttgcgagagtacagaaacaggaaacgaaccaaaccatccacaaacacgacaacaacaacattagcagtcactacaacacttcaagaggctgtgagtgcaaaacctccaatacatcccccgtcagtcctgtttaccgatacagactcactgttgaagccacgcactatgtcgatatcgaatgcatttgtacccctgtctggtaaagaaaaaactttcacaacatccaccgttcatcctgtgtccatgacaacggtatcgagccttccagaaagcgcgccctcgaatggaccgatgtttgagcctgtcagcccgagtgaggattttgaagtggacggcgcatctgttgacgcacatacaatgccttatattcaaaactcaagttacgatgtgaaacataatcatttgacgtcactggcaggaagctttcatctgcatcaaaaacctgtcaatattgaagggtgtttcagaaaaaacgcaacccaactttaattgaaaatcttataaaattcataaaattttagtagatgt

Transcript

scaffold20.g20.t2

CAACGAATGCATTGGGATAATGGCGACCATGATAAAGGAAGGGAAGTTTGCGATGTCTTATTATTTCGATTATGATATCACTCCTGGATAGAGCATGATAAAGAGACCATGACAGAATGAAAGCTAAATGATCAAGGTTTATTATGAAATTATTTATTACATTGTGCGGTGAAGAAAAGTTACACTGAAGCTGTGTTTTTCTGGCTTTATTTTTGCTGTTGAAAACACAACGTTATCGGACATAGCCAACTTAGGCAGAGACTATTCAAAGAGTTATTGAAGACTAAAGATTGCCAAATAAGAGATACTAAGTGAAGAAATATCTACAAGGTACTGGCTGGTGCTTGGTTTGGAGGACTGGCGTAAGCTGCTTAGACTTGGTAACAATGTGGCATTGGACGATTGCATAGATGCCTGTTCCAAGGCCATTACAGCTGATGATGAATAATTTGAAAAGTGCTGAATTGATTAGAGAATTGAAGGCAGAAACTGAAAAGCTTGTGGAGAAAAACAGCATGGTGATTAAACCAGAAGAGAATAGCATTGGATTGGTTAATTTAGACAATAGCTATTGTTTTGAGACAAAAGAGAATCACCTTACACCATTGAGAAGGAATGTAATTCCATATCCTGACCACAATTATGGACAACAACCACCATTGACTCCACCGGAACAACATAGTCCTGATCCAAATGAACAAACTGACACTGGTAATGAGGATGAAGATGAGGAGGGTGTAACAAGATGTATATGTGGATTTGATCATGATGATGGCTACATGATTTGCTGTGATCGTTGTGGGTCTTGGCAACATATTGATTGCATGGGGATTAAGTCTGACAGTGTCCCAGAAAGCTATCTATGTGATCGCTGTGACCCAAGGCAGTTGGATGCTGAACGAGCAAGGGCCATTCAACAAAAGAAGAAAGATGCTGTTTCAGatgatgatggtgatgatgatACCGACACTGAGGAGGAGACTGGACAAACATACACTGCAATTTCCAACACCCCAACGAGAATTACGTTAACTGCAACTGCTGTTATTAAGAAGAAAGGCAAAAATCGAATCAAAAGTGCGAACTCAGAAGGACAGACGAAAAATCGAAAGAAAGTCAACAGAAAAAGGCAAAGAACCTCGACCGGACAAATTAATGAATCAACACTTCGCTTCGATAGCAACTCGGTTGAAAGCCATATTGGGCTTGAGAATTTCCAAGAGATTGCAGATAATATTTATGATGAGGCTGTACAAAATCTTCGTTTTCAGAATACCGAGAACGCACCGGAGTTTGTCCCGCAAGAAACGAAGAAAGTTTATGCAGTTTCTCAAGTGTTGGAAAATCGAAAGGGTTTAATAGCAGTTGAAGAAATTGAAATGGGACAACGAATTGCTGAATACAAGGGGAATGTTTTACTTCAGTCAACTTATGAAGAATCGAATCCATTTTTCAAAAGAGCATGCCCATTTTTGTTACACTACAACCGAATTGATCAGCTAGGATTGGTGGTTGATGCAAGAACGATTGGAAACGAGGCACGATATGTCAGGAGATCATGTGATCCGAATTCAGAGGTTATCCATGTAGTCACTGATGGAAAACTTCATATATTCATTAGCAGCAAAAGACTATTATCCGCAGGATCCGAGATAACGATTCCATTTGACTTCCCTTTGGACACGTATTCAGGATATGTGGAATGTGCATGCAATGAACCAGCCTGCTTAGCAGTGAAGCATAATCAGAAATTTATGCCCCATGGTGGGAGAAAGAGAGCCAGATTCACTTCGACAACGAACCAAGATTCATCCACGAGGAATTCAGCTTCTGAGAATCAGatttacagcaaagtaccGCACGGACCAGGGTCGGATTCGGCTCATTCACAGACCGCAACCCATGGAAGGCCAGTTATTTCATTCGAAAATATGGTTCCTCAAAGTGCTGCCGCTCCTAGCAATGCAGCCCCTGTTCCAAGGCGCATCGCTTCGTATACACCTGGATCTGGAAAGAAAAGGCTCAGCGTCAGTAAAAAACGTCCACGTGTGTCAAGCTGCTCATCTGATCCATTGTCTCCTGAAATCACAAGCTGCACAATTACAACAACACCGGTAACTCCTTCGCAGGAGTACGTTATCCATACACATACGCCAGATCACAATGGTTTTTACAAGCAGAAGGGAAAGAAAGATAGGGATAATCTCTCGTTGTCCGTTAATGTTGACAAATCGGCACCAATCTTCAGAGATGCATGTCGCAAACTACGAAGAGATTACCTGGATTCTACTGCAGATAGCCCAACACCGCCCTCTACCCCCGGCCAACTGAGCCCTGCCTCAAGTCATTCTCAGGTTGGGCTATCAGTCGAGACGTGCAGTAATTTAGCATCGCCGTCCGGTCAATTTTTATCATCTTTTGAACGGCGACATATGCTGAACGGCCTACTTCAAATAGCTGATGAGAATGATGAGAGTAATTCGTGTGCAGAAAGTCCGCATAGCATGACTGTCACAAGTAATGGACTGGTTACATCTGACGAAGTTATGGGAGATATTGTGGTCCGGGTCGGTGTGCAGCATGCCCCAGCCGGGAGAATAGCAAGCAGGAGACCGTCCAGAGAAGTTTCCTATTTTGGGTCTTTGAAAAAGCGATGGCTCATTCAATATGACAGACGTACTCCCATCGATATGCAACATATGAACGGCGTTGCTCCAATGACGCTTACTAATCTCATGAATGACTTCAGTATCCAAAAAAGAGCCGAACATATTGCGTCTTGTGTTTTCAAAACACCCAAGAGTTTCATTCCTCTGAAGAAACGTAGACTAAGAGAGGCTATGGTAAACGCCGAAAAAGAAACAATGGAAACAAAGGAGCAAAATTCAGTTGAACTCGTAAATGGCGGTGATTCCTCTCACATTCACAGCAGATTTGATGCCTTATCGAGTGACGATAAATTGTCGGAATCCCCTCCAAAAGTTTCTGAAAATATTGAAATTGGTGTATCGAACACTGCAGAAGTTGTCAAAGAAATTTCTGAAGATGTGAAAGATCTCACAGTTAGTACTGAAGATCCACTGGTTGGACCAGGATCTAATTTAACCAACGATACACTTCCTACAAATTTGTTCCCCGCGCAGACCTTACTCAGCCAGGCAGTAGTTGAGGGTAACCAAATCGATTTGGCGAAGACTGAACCACATCAAAAAGGGCCTTCTATCAAGGCTGACTTGCGCAAGACTAAACTGGACAAAAAAGAGTCCAATACTGATGTTGAGGTCACGAATTTTATTGATAATCGTGGAGATTTACCAGTATTACGGAAAGAAGAAAAACTGGAGGATGTTAACTTCAGGATCAATAATATTGTTGCGTCTAGTGGAGAACAAAATGCTGCTAATTTTACTCAAAATGTAACTGCTGATGCCCATATAGCTGCAAGTATCGACACAACGGATGTAGCTTTACCTGAAATGAGGTCAAAAATTGAGTCACATGATACTACTGCATTGTCACGTGATAAAACAGCAGCTTCATTATTGGCTGGATTGATAAACGACAAGGCAGCGAATTCTTCACAGTTAAACAATGGTATCGAATCGGATACGAAACTTGGACGGGACGAACCAAAAGTGATCCGCGATATTGAGTTGCACACAGTACAAGTAGATCGCAGGCGGACGGAATCTGTGCATCATATTTACACGGGCCATCATACTGTTGTTGATAAATCACCTGGAACGACCAGGCCTGCAATTTATACGTCGGAAACGAACGTTGATAAGCCAATCGCGAGAACTGCCGAGGTTTCTCTACCGATTACTTTAACGAATGAACCGATAATCAAACCGTTATCAATCGTACGAGATCCTCGTCTAAGCTCGTCCTCGTCAAGAAGCAGTCGGGATAGTTTAGATAATAATGTTTTTATGAGATCGGATTCGGTGAGTTCTCTTGAAGATAGCTCAGCACAAAGACAGGATTTGGATCGAAGGATAACGAATGACAAGTTGGAGGGGACACCAAACACTAAAAAGAAGATGTCTTTGCGAGAGTACAGAAACAGGAAACGAACCAAACCATCCACAAACACGACAACAACAACATTAGCAGTCACTACAACACTTCAAGAGGCTGTGAGTGCAAAACCTCCAATACATCCCCCGTCAGTCCTGTTTACCGATACAGACTCACTGTTGAAGCCACGCACTATGTCGATATCGAATGCATTTGTACCCCTGTCTGGTAAAGAAAAAACTTTCACAACATCCACCGTTCATCCTGTGTCCATGACAACGGTATCGAGCCTTCCAGAAAGCGCGCCCTCGAATGGACCGATGTTTGAGCCTGTCAGCCCGAGTGAGGATTTTGAAGTGGACGGCGCATCTGTTGACGCACATACAATGCCTTATATTCAAAACTCAAGTTACGATGTGAAACATAATCATTTGACGTCACTGGCAGGAAGCTTTCATCTGCATCAAAAACCTGTCAATATTGAAGGGTGTTTCAGAAAAAACGCAACCCAACTTTAATTGAAAATCTTATAAAATTCATAAAATTTTAGTAGATGT

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 activity RING\|PHD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00856 all species →	SET	SET domain	Family	Interproscan
PF20826 all species →	PHD_5	PhD finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR001214 all species →	Domain	SET domain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR019786 all species →	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46462 all species →	UPSET, ISOFORM A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0034967 all species →	Cellular Component	Set3 complex	Interproscan
GO:0035064 all species →	Molecular Function	methylated histone binding	Interproscan
GO:0070210 all species →	Cellular Component	Rpd3L-Expanded complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09189	MLL5; [histone H3]-lysine4 N-trimethyltransferase MLL5	EC:2.1.1.354	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.