Gene detail

Detailed information of scaffold2012.g4.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold2012:23596...33124
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold2012.g4.t2

tatacgaatggcaagccatgtcaactcttgtgaggatgctgctgaggagccgcatgcagatttgggtgaaaatcattgtagaaaacgagggagaccaagttcaagaagagcaattgacaatgcaaagagaagaacagaggttttgcaatgggtcaaagaaaaggttgcttatgatccgaggagtaaagtgttgtctgccattatgttgcaacagtgcaagaaggacctatgtagggacaacgttggtgccataacacttggaagggtactcaggcaatgttatccagatgtgtactactccaatacaaagacagcatgcgggaagcgggtgaatgtatatttcagggtaaaattaagagatgatgctgatattgatgataatgcagatctcgaactggaaatagttcaagagcctgctgttcatcagaaaagtcccaaggagaaggaaacaggggaaacagctgtcgaatcgaacgtctattgctcgaaggcagcgaacgtcgttgatgctggtctgacattctcaaataacgaattctttttgagaaaagaaagagatgacctactgaagaaaatatcgatggtaacaaaaaggaaaatggctataccaaacagagaattgattgacaaaacaaagatctctggtactgaccttgattacaaggaaaaaatcggcgacggctcatacggcacagtttataaaggtctgttgaaaaggtcgaatcgagtgtcaaatgcggtggtagccatcaaatgtgccaaaaacggcaatcgttctgacgtgacagaatcttttttcagagagcttcgaatactgtttttcctcaggcagtcaaagcttgaaaatttccagtatctgttgggggcaacatatgatgcactcaacactgtacctttgacaattgtcaccgttttcgttgggtataagaaggagtcactgacgttctcaagatttgttgcagacgaaactaaatacccgttgactgtcgcgacgtttttgaagatatgtctatctttgtgcgaagcattgatgtctcttcatggagtcggccttatacacaacgacctcaaggttaataatgttttaataaggatagaggatatgtcagccgtaatcattgactttggaaaagctacccttattcacgaagccagacgaaaatcaaccaaaagagaccaaagcaactttccatggatgtcagatgaagttgcaaagtgcacctcctctccgacaatttatagcgatgtttacagttatggctacatgctaaattacgcagtctcaaaaatgaatcgatacaaatgtgactctatgagccagctgaaactcattgcagatagttgtcaaagtatagatccttattcaagacctccattgcgccgaatagagcatgaaatcaattctttcccagaatattaccttgaggctatgaggaggcaactgtgtgaaggatgtggccaatctttcaccaaaaaatatttaaaaaatcatcttgaaacattctacgatgcagcgagcaatgtataccaatgttcttcttcggcaaagggaaacacatcatccgaatcagattgtgcaccagacgacttctctagtgataatgaaccttcaatgccaatgagcggcggtgaagattttgatcattcatcaggcattgaacatgaagaaaatagaagaagcatacctaacctgaacgaaagtgacaagagagccttttttgacacaccagatgaagacggcaatgagagttcagaagacgagggtcaacaacatgaagatctttggatcaatgatgaagagattgcggaagtagagagggatttggagtcaggagcccaagaaattgaaaatgaagaaaatgattccttctctgacataattgttcgttggctttgcttgtttattgcactgtggcaaagcacaaatacgatttcagatactgctattgagagccttttgaagtttcttggcagttttctctttgtgcttgcaagtaaatgttcttttctcgatccggaggtggtgaattttccaaggacaatatctgccttaatgacacgccttggcctcaagaaatccacttttataaaatttactgtctgccctgactgttttaaattgtacaaaacggaaaattgcttctacaaagtgagaaacattctttatccaagaaaatgcacttttgtagcatttccaaaccatagacagcggcatctaagaaaggaatgtggagctgaattattgagacgagtaaaaacaccatcgggaagagaaagtctcgtgccattcaaaacctattgctataaaccattgagagaaagtctgggtactctccttatgcgcaaggattttctacctctctgtcaaaaatggagagaaaggcagctaccagaagatgtactagaagatgtgtatgatgggcaagtttggaaagatttcaagcattttttcgatgaatctccaaggaatctcggggcaatgttaaatctggactggttcaacccatacaaacatgccgcctactcagttggtgttatctaccttgtttggctaaaccttccaagagtttcgaggtttcgaagaaaaaatgtaacacttattggcatcataccgaatatgagacatgagccctcaacgaacacattcttgcagccacttgtaaatgaactgaatgaagcatggaaggacggtttcatgttgccatcacatggatctgctggacgtttgaatttgttcaaagtggcactaatgtgtgtaggttgtgacattccagcgtgcagaaagctttgtggattcttgggtaagctcattttcattgactattttcattgactaacctcagtaagagtttatcagaagcatcaacaagaatctgatcttgggtcaatcatttcttgataatttcagtctgttattattaagccctggacgaacaagtaaataatgttcgttgat

Transcript

scaffold2012.g4.t2

TATACGAATGGCAAGCCATGTCAACTCTTGTGAGGATGCTGCTGAGGAGCCGCATGCAGATTTGGGTGAAAATCATTGTAGAAAACGAGGGAGACCAAGTTCAAGAAGAGCAATTGACAATGCAAAGAGAAGAACAGAGGTTTTGCAATGGGTCAAAGAAAAGGTTGCTTATGATCCGAGGAGTAAAGTGTTGTCTGCCATTATGTTGCAACAGTGCAAGAAGGACCTATGTAGGGACAACGTTGGTGCCATAACACTTGGAAGGGTACTCAGGCAATGTTATCCAGATGTGTACTACTCCAATACAAAGACAGCATGCGGGAAGCGGGTGAATGTATATTTCAGGGTAAAATTAAGAGATGATGCTGATATTGATGATAATGCAGATCTCGAACTGGAAATAGTTCAAGAGCCTGCTGTTCATCAGAAAAGTCCCAAGGAGAAGGAAACAGGGGAAACAGCTGTCGAATCGAACGTCTATTGCTCGAAGGCAGCGAACGTCGTTGATGCTGGTCTGACATTCTCAAATAACGAATTCTTTTTGAGAAAAGAAAGAGATGACCTACTGAAGAAAATATCGATGGTAACAAAAAGGAAAATGGCTATACCAAACAGAGAATTGATTGACAAAACAAAGATCTCTGGTACTGACCTTGATTACAAGGAAAAAATCGGCGACGGCTCATACGGCACAGTTTATAAAGGTCTGTTGAAAAGGTCGAATCGAGTGTCAAATGCGGTGGTAGCCATCAAATGTGCCAAAAACGGCAATCGTTCTGACGTGACAGAATCTTTTTTCAGAGAGCTTCGAATACTGTTTTTCCTCAGGCAGTCAAAGCTTGAAAATTTCCAGTATCTGTTGGGGGCAACATATGATGCACTCAACACTGTACCTTTGACAATTGTCACCGTTTTCGTTGGGTATAAGAAGGAGTCACTGACGTTCTCAAGATTTGTTGCAGACGAAACTAAATACCCGTTGACTGTCGCGACGTTTTTGAAGATATGTCTATCTTTGTGCGAAGCATTGATGTCTCTTCATGGAGTCGGCCTTATACACAACGACCTCAAGGTTAATAATGTTTTAATAAGGATAGAGGATATGTCAGCCGTAATCATTGACTTTGGAAAAGCTACCCTTATTCACGAAGCCAGACGAAAATCAACCAAAAGAGACCAAAGCAACTTTCCATGGATGTCAGATGAAGTTGCAAAGTGCACCTCCTCTCCGACAATTTATAGCGATGTTTACAGTTATGGCTACATGCTAAATTACGCAGTCTCAAAAATGAATCGATACAAATGTGACTCTATGAGCCAGCTGAAACTCATTGCAGATAGTTGTCAAAGTATAGATCCTTATTCAAGACCTCCATTGCGCCGAATAGAGCATGAAATCAATTCTTTCCCAGAATATTACCTTGAGGCTATGAGGAGGCAACTGTGTGAAGGATGTGGCCAATCTTTCACCAAAAAATATTTAAAAAATCATCTTGAAACATTCTACGATGCAGCGAGCAATGTATACCAATGTTCTTCTTCGGCAAAGGGAAACACATCATCCGAATCAGATTGTGCACCAGACGACTTCTCTAGTGATAATGAACCTTCAATGCCAATGAGCGGCGGTGAAGATTTTGATCATTCATCAGGCATTGAACATGAAGAAAATAGAAGAAGCATACCTAACCTGAACGAAAGTGACAAGAGAGCCTTTTTTGACACACCAGATGAAGACGGCAATGAGAGTTCAGAAGACGAGGGTCAACAACATGAAGATCTTTGGATCAATGATGAAGAGATTGCGGAAGTAGAGAGGGATTTGGAGTCAGGAGCCCAAGAAATTGAAAATGAAGAAAATGATTCCTTCTCTGACATAATTGTTCGTTGGCTTTGCTTGTTTATTGCACTGTGGCAAAGCACAAATACGATTTCAGATACTGCTATTGAGAGCCTTTTGAAGTTTCTTGGCAGTTTTCTCTTTGTGCTTGCAAGTAAATGTTCTTTTCTCGATCCGGAGGTGGTGAATTTTCCAAGGACAATATCTGCCTTAATGACACGCCTTGGCCTCAAGAAATCCACTTTTATAAAATTTACTGTCTGCCCTGACTGTTTTAAATTGTACAAAACGGAAAATTGCTTCTACAAAGTGAGAAACATTCTTTATCCAAGAAAATGCACTTTTGTAGCATTTCCAAACCATAGACAGCGGCATCTAAGAAAGGAATGTGGAGCTGAATTATTGAGACGAGTAAAAACACCATCGGGAAGAGAAAGTCTCGTGCCATTCAAAACCTATTGCTATAAACCATTGAGAGAAAGTCTGGGTACTCTCCTTATGCGCAAGGATTTTCTACCTCTCTGTCAAAAATGGAGAGAAAGGCAGCTACCAGAAGATGTACTAGAAGATGTGTATGATGGGCAAGTTTGGAAAGATTTCAAGCATTTTTTCGATGAATCTCCAAGGAATCTCGGGGCAATGTTAAATCTGGACTGGTTCAACCCATACAAACATGCCGCCTACTCAGTTGGTGTTATCTACCTTGTTTGGCTAAACCTTCCAAGAGTTTCGAGGTTTCGAAGAAAAAATGTAACACTTATTGGCATCATACCGAATATGAGACATGAGCCCTCAACGAACACATTCTTGCAGCCACTTGTAAATGAACTGAATGAAGCATGGAAGGACGGTTTCATGTTGCCATCACATGGATCTGCTGGACGTTTGAATTTGTTCAAAGTGGCACTAATGTGTGTAGGTTGTGACATTCCAGCGTGCAGAAAGCTTTGTGGATTCTTGGGTAAGCTCATTTTCATTGACTATTTTCATTGACTAACCTCAGTAAGAGTTTATCAGAAGCATCAACAAGAATCTGATCTTGGGTCAATCATTTCTTGATAATTTCAGTCTGTTATTATTAAGCCCTGGACGAACAAGTAAATAATGTTCGTTGAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02992 all species →	Transposase_21	Transposase family tnp2	Family	Interproscan
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR004242 all species →	Family	Transposon, En/Spm-like	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR050198 all species →	Family	Non-receptor tyrosine kinases involved in cell signaling	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24418 all species →	TYROSINE-PROTEIN KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004713 all species →	Molecular Function	protein tyrosine kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold2012.g4.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.