Gene detail

Detailed information of scaffold202.g19.t1 in Morbakka virulenta

Genomic Location: scaffold202:910427...932488
NR annotation: MBW0556314.1, hypothetical protein [Austropuccinia psidii MF-1]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold202.g19.t1

tacactgaaactgttgagaacaataccatccaaagaaatggttcgtgtcattatgaccatgatatcacagcggcgatttcatgtacatgtgggtgcaaagaaatcacgctgccgaaccctaactaatggtgtaccacaaggttcagtcattgctccacttcttttcaacctgtacacacatgatatacccacaactatcagtaaaaaatacatatatgctgacgatatagcccttaagacttgtcataagacgtttgatgtaattgaaagaacattatcacgagatatggatatcatcagcaaatacttcaaaaattggagactcaaactgaatatcaccaaaactgtttccagtgtgtttcatcttgttaatcgaagagctgattatgaactcaatgtctcaatatctggcatgaggttaccttttgagaaaactcccaagtaccttggtgtcacactagaccgtactctctcatacaaacatcatttgattgaagtctcttctaaagttaccaagcgatgtaacctactaaggcgtattgctggctgtcggtggggtgctgatttctcgactttgaaatcatctgctttagccttgtgttactctgctgcggaatattgttctcctgtttggagccaaagccatcactgcaataaagttgatgttgcacttaatgaatgcttgagactagtgagtggttgtataaaatcgacttcaactgatgttcttcctattctttgtggtattgagcctgccgacttaagaagagataaaaatatattgaatttatataatcgtgtgctatcagaggaaaggcacattcttgaaaaattggttgaatatccacttacaaacaataggttgaagagcagagttccactttcgaatcgcatgcaccttttagcttccaccataaacgatacagcatctgtcaaatcttgggctgctaatgtgtggaaacagcgatggagtaatacagacaaccagctttcccaatttattcctgaacctacggtgaaacctccaggacatgacctgaagcgtgaacaatgggtgctcttaaatcgattacgatctggatatggacgatatgccgatttcatccatagaattggtctaaaggacaatccattttgtcgttgtggtgaaattcaatcccatcaacacgtattgatttgccaactgatagaaatgggtcgaaaaaagtccctcagtgaagttcaaagcggtcaaattgttgctctgcatagagaaggactatctgaaaggaatatttctatgaaattgaaagtcagcaaaactgcagtccaccaagcagttaaaaagtatcagcagtatggctgctacaaagacttacatcggagtggaaggccaagaagaaccactgtaagagatgaccacctgatgaaaaggatagttacgaggtcaccaatgagttccatcaacaaaattcaagctaatttggtggaaagaggtgtgagtgtaagtcgcatgactgtttccagacgtctttcacacgaattcggtctaaaatcctacaagcctgccagaaaaccacgcctgacaccggtaatgaaggcaaaacgattagccttcgctaagaagtaccagaactggacaccagcacagtggggtaaagtcatgttctcggacgagttcactctacagcagtttgtggtgaggaaacaacatgttcgccggccacctggaacgagatttaatgaaaaatacacgatttcttcgatgaaacaccctccaagtcaaatgatatggggtgcaatttcggaaaatggaattgaatcgtcgcaaatattcctttcggaataattctttcatctccttctcctttatcttgtcaagctctaaaataccaaggtatttgtatccttcatcactaacctcccgaatactttctccatttgttagtgttatatcttcacttttgaccaatttccctcgtttcatgataataacgccacacttctttaccccaaactgcattccaatatcctgacttatcacttgcactgtcgacacaagactatcaatttcattcttgttcttagtaaacatctttaaatcatccatgaataaaagatggttgatttt

Protein

Uniprot

Uniprot term	Description
P21328	RNA-directed DNA polymerase from mobile element jockey OS=Drosophila melanogaster OX=7227 GN=pol PE=1 SV=1
Q95SX7	Probable RNA-directed DNA polymerase from transposon BS OS=Drosophila melanogaster OX=7227 GN=RTase PE=2 SV=1
Q9NBX4	Probable RNA-directed DNA polymerase from transposon X-element OS=Drosophila melanogaster OX=7227 GN=X-elementORF2 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF01498	HTH_Tnp_Tc3_2	Transposase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR052560	Family	RNA-directed DNA polymerase, mobile element	Interproscan
IPR002492	Domain	Transposase, Tc1-like	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR36688	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006313	Biological Process	DNA transposition	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan