Gene detail

Detailed information of scaffold203.g29.t1 in Morbakka virulenta

Genomic Location: scaffold203:1300964...1337501
NR annotation: XP_002732911.1, PREDICTED: ubiquitin carboxyl-terminal hydrolase 14-like [Saccoglossus kowalevskii]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold203.g29.t1

ctgttgacccttacccgacttttagcatttctgtacattgcctgaacaaccttaatcagccattcacttactcctagtttccgtaaagcccaccaaacaacttctcttggcactctgtcaaaggctttttccaaatccacaaaggcaaagtacagcttcttgtttttcccaaggtacttctcttgcatttgtctaaggataaaaatggcatcaatagttcctcgtccaggcataaaaccaaattgcatgtcatcaatgtttatttcaattctaatttgtttttccataactctttcaacaactttcaggacttggtccattaactttaatcctctgtaattatctctttctagagcttctccttttcctttgtaacaattgataattgtacttatttcccagtcctcaggaatgacaccatctcttatgatctgatttgttagatcagtgatcatctctatacttctttcacctgcagctttgaccatctctgccacaattcctgaaggaccagctgctttgcctttcttcattttctttacagcttccctcaccatttctttctcaatgaaaatggctggtccagatactgtttctagctctccaagattttctctatcccaagaaaactctgtgttcaacaatctctcataatagcacttccaggcattcttcttttcaagttcacttgttgcaagttctccatcatcattcctgatacacttttctccaatgatatcctgattagtcttgatcatctgcttagctatcttgaatacttcattcttctggtcatctctacacattatgtctggaaaccttcttttctcggcatccatctttgctttgtagattgcttgcctagctactctcttggcctccagatacctttctttgttaactaacccctttttccattgactccacagccttctcttctctttcacataattttcaacagaagtattccaccaccatgtcactctatgacgtggaggcccttttgtccagccacagacttggtctgtggcttttaaaagtgtatccttgatcttctcccattgctcttctacacttcgtaggtcttttcctggactagctcccacaattccattcacttgatcttcaaaggcctgctttacttgtccatcatttagtctccacacctttctccttgggatatactttcttttcactttatgtactttcttaatcctgaagtcacaaattactggcttatgctgggtcacaaattcttcaccgggtatcacttttacatcttgcaaatacttcctgtcttttgtctttaccaaaatgtagtccacttgagtcatagctgtcccagactcataggttaccagatggctatcccttttcttaaaaatagtattcgccaccaacatgtccatggcaagtccaaactctagaattctttcaccctccttatttcggtcaccatatccatttcctccatggactccctcaaacccagatgctgttcttccaacatggccatttagatcacctgcaatagcaacaatttctttctctgccagcttaccagtgactgcaatgagactgtcatagaattcatccttgacttcttcacttaagccacattgtggtgcatacactgatattgctgtgaagattgtctcacctatcatcagtttaatcagcataattcgatcatttatgcTTAATGTCAAATGGGGGAAGACCAAATTTGAAAATGTTGAAGTGGATTTATCTGAGCCACCAAGTGTTTTTAAAGCACAGTTGTTTGCATTATCAGAAGTTCCTCCTGAGAGACAGAAAATTATGGTGAAAGGAACATCATTAAAGGATGAGACATGGGATCATTTCAAAATAAAAGAGGGAATTACACTGTTGATGATGGGCAGTGCTGAAGCTCTACCACAAGAACCAGTAAAGAAGACAGTCTTTATGGAGGATATGTCTGATTCACAAGTTGCTTCAGCTCTTCAGTTACCAACTGGATTAAATAACCTTGGAAATACGTGTTACATGAATGCTACTGTACAGTGTCTAAGAAATGTTAGTGAATTGAAAAGTGCACTCCAAAGCCATCAAGGCCATTTAAGTCTTGGGAGTGTTTTGGCAAACCCTTCACAAGCAATTACAGTAGCTCTAAGGGATTTATACAAGTCAATGGACAATGCAGGAGACACATTACCGCCAATTATTTTTCTTCAGGTTTTACACTTGGTGTTTCCACAGTTTGCAGAGAAAGGTGAACAGGGAACTTTTCAACAACAGGATGCAAATGAATGTTGGACACAGATCATTAGGATGCTTCAGCAGCGGCTAACACTAAACGTGGGAACAGCGGTCGGAGAACAGAGTGCAGAGGCTACAACGAGTGATGCCCAATTTATTGATAAGTATTTTGGAATTGAGTATGCCTCAACCTTAAAATGCGATGAAGCACCTGAAGAGCCAATTACGACTTCAAACGAAAAAGTTTACCAAATTAGTTGTTTTATTTCACAGGATGTCAAATATTTGCATACAGGCCTACAATCAAAATTAAAAGAAAACATAACAAAATGTTCACCTACGCTGGAAAGGGATGCATCTTACACAAAAACGTCACTTATTAAAAGACTACCAGGATACCTAACAGTTCAGTTTGTGCGTTTCTTCTATAAAGAAAAAGAAAAGGTTAATGCAAAAATTTTAAAGGATGTTAAATACCCAATGACTTTAGACGTGTATGATTTATGCACTCCGGAGCTTAAGAAAAAGTTGGAACCGATGCGGGATCGATTCAAGGAACAAGAAGACAAAAATGTAGAAAAGGAAAAGAACAAAAAGAAAGGTAAAGAAGATAATAAAATGGAAGTAGATGAAAAGTCCGAAACCAAGAAAACTATTACGCTACCTTACTCTTTTGAAGATGATGTAGGGTCAAATAACAGTGGGTATTATGAACTTATTGCAGTGTTAACGCATCGTGGAAGATCGTCTTCGTCGGGTCATTATGTGTCATGGGTTCGGAAGAAAGGAGATGATTGGGTGATGTGTGATGATGACAAAGTCTCATTGGTAACTTCGCAAGACATTCTTCGGCTTTCTGGGGGTGGAGATTGGCATTGCGCTTACGTTCTTCTTTATGGACCGAAACAGCTGACATTGGATGAGGAGTAAAGTTTTTTGTCTGAATTCAATGGAGTATATATGCCAAAGGAAACCATAATGAAGCATTTCATACAAAGCAGAGCTGTAGTGTGTGTGAGAGAGAAAGTGAAATTCATGTCGCAAGCAGTTGCCGGCCCGATGATTTGTACCACACAGAGTAGAGTTACTGAAATTAGGCAGTAGTTTGATATCCTTACCAGAGAATCATTCTTAAGATTCCATTACTGACGTTTTATAGGATAACAACAATAGCAAATAATGCTTGTATATCGGCCTTCTAGGCTAATTGCCTACATTGCTTTACTAGATAATAGATTTAAAAAATGTTTTCTGATAACACCTAGTATTGGCTATAAAATTCTAAAAGCCTT

Protein

Uniprot

Gene family

Uniprot term	Description
P60051	Ubiquitin carboxyl-terminal hydrolase 14 OS=Pan troglodytes OX=9598 GN=USP14 PE=3 SV=2
P54578	Ubiquitin carboxyl-terminal hydrolase 14 OS=Homo sapiens OX=9606 GN=USP14 PE=1 SV=3
Q9JMA1	Ubiquitin carboxyl-terminal hydrolase 14 OS=Mus musculus OX=10090 GN=Usp14 PE=1 SV=3

Gene family	Subfamily
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_Other
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_PIM

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00240	ubiquitin	Ubiquitin family	Domain	Interproscan
PF00443	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018200	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR028889	Domain	Ubiquitin specific protease domain	Interproscan
IPR019954	Conserved_site	Ubiquitin conserved site	Interproscan
IPR000626	Domain	Ubiquitin-like domain	Interproscan
IPR044635	Family	Ubiquitin carboxyl-terminal hydrolase 14-like	Interproscan
IPR001394	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43982	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016579	Biological Process	protein deubiquitination	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061136	Biological Process	regulation of proteasomal protein catabolic process	Interproscan
GO:0070628	Molecular Function	proteasome binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11843	USP14, UBP6; ubiquitin carboxyl-terminal hydrolase 14	EC:3.4.19.12	Ubiquitin system	ko04121	deepkoala