Gene detail

Detailed information of scaffold204.g11.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold204:176712...231224
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold204.g11.t2

agtgacacccttggatctggaatcttaccatgtgatctctcgaggccatttcctcggcaacttgcaacaccacaaaatactggctgctaactgctggcaagggtaggaacacgatctttgacttcttgctttcgacctccctcgtttgaagcatcagcacgacgacggatgcaaacagcaagaacctcttcaagaaattggcggcatccatgctttcttttgaaactgcaaatgatattatggcggatggcctacctgggctttgcgacgatcagtttgggagcacagtttctttgaaaataaagtacaaagagaaatgctgaatcacgctgcgaggcacttgttcttggccccaataggggagttgactgactatttgcgtaatcataagcaaacagttgcgtagtcattgcgcacaagagtctattttgatatcttagatctttgtttacaaagtttggcgggaaaatcaattttaattgatgtgtaacgggatgtgacgtaaaaatgaggtcagaatgatctcgttttgggaatcgaagcctcgcttgaaatattgtggcgcgaaaactcttgcaaaatcccttgctgacgccatcttaacggtttgttttgttgtggtaaacttgaaaactggaaagtctttttctgccatgttgttcaaggtactttacacacatcaaaagaccaagaagaacaagacttggcaggatggttatcttgaactgccagtacatggaagaaaggcaagcttgctatctgaagacaagaggcttttggacagtgtttatcctggacgacagcaagtaactgctgatgctgaattggagagtgacaagtatcttattcaagttgaagaagaagtttgcaatgttgttgagtcaagtaaagatgtataccgaacattgcaaacagtgacaagtaatatccagagaagagagagtaaacctcacgggcttcctgcctcaaaggttattagaaagggtttcagaccaccatccagacaaacgaacaatatttgcaatggtgacaaggaggcttctggagacatggcaacgctacatcctgttcactccagcctaggacagaaggaaaaatcttttagtagagacagtgccattaaacaccaatttgaaaatagcagaagtcaatttgggtcgctttacaatgtctcttacttacgagataatgacaataaatcatggcattcagctagatcaaagcaaggaaatgattctgtggaagagactttattcccttcaacggatgaccggtctccgaatttttcttcgagttgcaatgaggagaactgttatcaagagagaagagaaggaagtaatcttaggccaatgaatattgcctgtcctgattcgtttatgaaaagagattcttttacgaagaaggatgaagtgggttgttcaatgttttcttgccagcaagcagaaaatataaggtatactacaaagaccaataattcaggcttgactgaagatttcagaagatcagctgggcaaattctagcgttattctccaagaagcagaactgtcaggatgtttctctgctggaacagaagcatttttctcctggtaatggcaagagccttgttagtagtgatacgctgcaacataactggcctaggaaatatacccatgaaagcagcaaattcagttcatttactcaggataattcaaggtcgtattcaaataatgatcaaacaaaaattgaaaacataaatagaccatgttttgaacaatcttgtgctactgaagggggtgtaatgtcgcggggctatacgccaagaaatagtgtctttctaagtcctcaggatcttcaaattggtatctctgatctagatgactctccttgtatacgagaagagaggtttcctgaagcagcagatgaaaatgaaagctcagactttgagattagtatggacatgaaacttctgcagcccaataatgatattaaaagacgcacaatcacttcagaagacttcattcaatcgattaaacgccaaagacagaaccctctagaagaagatatttctgctcatcctggatcaatcttgccatattctggattaacagatgacttcttagagcagaatgaaacactgactactacgatggatgattctgtgttgttggatacggattattcacccgttttcaaccctggaaatgagaagactgtacatatagctccgtctattcagaccaaattgattcgtggtgctgtcacaagtagtatcgttagaaggacgaagccacacgaaacacctgtctactctggaatcatggaagcagatcagcacagctttgatgactatgttgatgaattacaccaggaaacggctctttctgactggtgtaccgatccatgcacagctgatacggaagccaatgtcaggagacttgcgattgaccaaaatttctcatcaagcacaaatggtgccactgtcaagaggggcattacatgtggcccaatagacacgaatataagcacgaatacgaacacgtgtaagaaaacgtcaccatttgcatttgttcctactccttcaattgatttgcaagatgatgagcttaccttgtacagcgatggggagctatataccaagaatcatagctgtgatgatagcatcaagtccacaataacgaagccgccaacccgaagaattggccttacaagatctataatggatacgaaagagccgcaaccattcacgcctacgtatgcaaaatttgcaagctctgccatgtcattggacaatggaatgaagtcaatgtgtggtgagctgtattttccagcagcagccgactgtgaaacactgccaactcctacgcgattaacgaagataccagtcgaatttaaaaaccttatagagtacaaaagcgtatttcgagctgcattaagagagcatctaaacattctactatttgatcttgctaaatcctatcataatgcactgaagagagctgaaatagctctggattttgagaagaagtcaggctcaaataacaaatctggaaatgttccttcgtgccctcatggcgattgtactttacgcacagtacgtaaagatggaccgaacaagggaaagttgttttactgctgtccaggaggtggctcgaaacagtgcaagttttttatatgggctgaggaattccaaaagaaatctgctagtggaaaaaattgtgacgtaataaagcaatcaagaattgtcctttctgatgcgaaaagtgtcaacaatttttttaatggtcagggattggcattctactgtgcatgtactttcgtaaagaagagtaaaaatggattcgatggtggaaaatttaagaagtggggaaaaggcaggaataacagattcatggaggaatgtgatactggcaaaaagagtttataccttagtttacccttcaaagcaagctcatcaacgtacagtaaagatgacctgtggatcgtatcaaagaattttaactttgaaccaggaaattcattcatcgcaaaaagtactttttatggaccaagctcctcgggagatgttcaaataaccgctgtcagctcctattgcccctcaaattggcagtctggagaaactgtccatgctctcctggcatgcaatgcaggaacagagctaagttgtattgacaatctagagaggatcagtggcatgagcgatgtaccaatattatcgaccctgatatatcacaatggttctactggaaatatccgtcctgcttcgagtaacagatttgtatgtcccacagtcaatcgtgcaaatcaggattctgaatgggataacgatgaaatagagcagatgatggaagatgttatttcgaagtaccatctaaatgaggatcaatctttggcccttaagaagataacaaatatgttcacaagtatggatagcgaccgagcagaagaatctcatacaacacttattcatggtgtgttcggagctggtaagagctttcttttggcagttgtcatcatgtttatggttgaacttttcaaaatgcgaagaacagagaatagcaactctaatcaaagcagctcctggaaaatcttagtttcttctactaccaatgttgctgtggacagagtgcttcaaggactcttggaccttggattcgacgattttgttcgagttggtagtgtaaagaagattgcaaagccagtgttaccatacagtgtacatgccacaggctctgatgaccaagaactgaaagaacttcaaactatgctcaagtcagatttgtctacagaggagagagcgtacgtgaggaagagcatcgaaagacatcgcttaggcctgaatagaaagaaactacaagaggtcccagttgttggtgtaacatgtgcagcatctgtcttccagtgcatggagaagttatcgtttaaggttcatttgcttgatgaatgcagtcagatgacagaacccctatcgatgctcccgattgcaaggttcaaatgcgagaagttgatacttgttggagatccaaagcaactaagtcctacaattcaaggatcagaagccgaacacgaagatggccttgagagaaccttgtttgatcgtctgaagaaaaagggtcacaaaccaatcatgttgagaactcagtatcgatgccacccaatgataagtgcaattccaaatgaattattctacaatggtaggctatgtgatggcgttgctgctgatgataggcttcccttgattgactggcttaaccctgtatgcttctacaacgtatcaaaaggaaaggaaaagtgtggaattgatggaagttacttcaacctggaagaggctgactttgtggttttcctaatcaatgcaatgctgacttttggtgtcgactcaaacaatattggagttatcacccaatataagtcgcaagctcagaagatatcatatcttttgcaagaacaaagttcaaatgtggcaacttcagagttgaaatcaattcagatttccactgtagatgcctttcaaggtgcagagaaggagataatcattctgtcatgcgttagaacagatcatgttggtttcatagactgtgacaggcgaacgaatgttgcgttaagccgtgccaaaaggcacttactaattgtggggaatctgaagattttagttcaaaacccgttatggactaaaattattgaatgctgtagtcgtaatcctgatgggctcacttcatcaaaagtgtttacagaatcgatgcagcctaggctaaaagaaattttaatattggaagagctggagaataaatcaaaaagtgggaaaagatcttccaagaagtgtaagaaatattcaaccaaaaaggattcttgcaacagtagcattaaaaacactgaaaatgaccgagatttaaatcaaatggacactgaagcaactccatattaccaatctcatccgtcttcaacaaacaactcaagcagttcaaaggagccaggtacttcgctcatagtttcaaacaatgattcacccatttgtatagacgatgatcccaatgtagaatttgacgtttcttttgatttgctatgatatttattgtaacccagctttataaccccatccacactgatgtggtttcaaatgaaaatgcatgcattcgtatccgttttcacttctgtgtccacactaccacgatcaaaacgtatttttttgtccaataaacccgagttcaaccggatgagtaaacaaataattaacac

Transcript

scaffold204.g11.t2

AGTGACACCCTTGGATCTGGAATCTTACCATGTGATCTCTCGAGGCCATTTCCTCGGCAACTTGCAACACCACAAAATACTGGCTGCTAACTGCTGGCAAGGGTAGGAACACGATCTTTGACTTCTTGCTTTCGACCTCCCTCGTTTGAAGCATCAGCACGACGACGGATGCAAACAGCAAGAACCTCTTCAAGAAATTGGCGGCATCCATGCTTTCTTTTGAAACTGCAAATGATATTATGGCGGATGGCCTACCTGGGCTTTGCGACGATCAGTTTGGGAGCACAGTTTCTTTGAAAATAAAGTACAAAGAGAAATGCTGAATCACGCTGCGAGGCACTTGTTCTTGGCCCCAATAGGGGAGTTGACTGACTATTTGCGTAATCATAAGCAAACAGTTGCGTAGTCATTGCGCACAAGAGTCTATTTTGATATCTTAGATCTTTGTTTACAAAGTTTGGCGGGAAAATCAATTTTAATTGATGTGTAACGGGATGTGACGTAAAAATGAGGTCAGAATGATCTCGTTTTGGGAATCGAAGCCTCGCTTGAAATATTGTGGCGCGAAAACTCTTGCAAAATCCCTTGCTGACGCCATCTTAACGGTTTGTTTTGTTGTGGTAAACTTGAAAACTGGAAAGTCTTTTTCTGCCATGTTGTTCAAGGTACTTTACACACATCAAAAGACCAAGAAGAACAAGACTTGGCAGGATGGTTATCTTGAACTGCCAGTACATGGAAGAAAGGCAAGCTTGCTATCTGAAGACAAGAGGCTTTTGGACAGTGTTTATCCTGGACGACAGCAAGTAACTGCTGATGCTGAATTGGAGAGTGACAAGTATCTTATTCAAGTTGAAGAAGAAGTTTGCAATGTTGTTGAGTCAAGTAAAGATGTATACCGAACATTGCAAACAGTGACAAGTAATATCCAGAGAAGAGAGAGTAAACCTCACGGGCTTCCTGCCTCAAAGGTTATTAGAAAGGGTTTCAGACCACCATCCAGACAAACGAACAATATTTGCAATGGTGACAAGGAGGCTTCTGGAGACATGGCAACGCTACATCCTGTTCACTCCAGCCTAGGACAGAAGGAAAAATCTTTTAGTAGAGACAGTGCCATTAAACACCAATTTGAAAATAGCAGAAGTCAATTTGGGTCGCTTTACAATGTCTCTTACTTACGAGATAATGACAATAAATCATGGCATTCAGCTAGATCAAAGCAAGGAAATGATTCTGTGGAAGAGACTTTATTCCCTTCAACGGATGACCGGTCTCCGAATTTTTCTTCGAGTTGCAATGAGGAGAACTGTTATCAAGAGAGAAGAGAAGGAAGTAATCTTAGGCCAATGAATATTGCCTGTCCTGATTCGTTTATGAAAAGAGATTCTTTTACGAAGAAGGATGAAGTGGGTTGTTCAATGTTTTCTTGCCAGCAAGCAGAAAATATAAGGTATACTACAAAGACCAATAATTCAGGCTTGACTGAAGATTTCAGAAGATCAGCTGGGCAAATTCTAGCGTTATTCTCCAAGAAGCAGAACTGTCAGGATGTTTCTCTGCTGGAACAGAAGCATTTTTCTCCTGGTAATGGCAAGAGCCTTGTTAGTAGTGATACGCTGCAACATAACTGGCCTAGGAAATATACCCATGAAAGCAGCAAATTCAGTTCATTTACTCAGGATAATTCAAGGTCGTATTCAAATAATGATCAAACAAAAATTGAAAACATAAATAGACCATGTTTTGAACAATCTTGTGCTACTGAAGGGGGTGTAATGTCGCGGGGCTATACGCCAAGAAATAGTGTCTTTCTAAGTCCTCAGGATCTTCAAATTGGTATCTCTGATCTAGATGACTCTCCTTGTATACGAGAAGAGAGGTTTCCTGAAGCAGCAGATGAAAATGAAAGCTCAGACTTTGAGATTAGTATGGACATGAAACTTCTGCAGCCCAATAATGATATTAAAAGACGCACAATCACTTCAGAAGACTTCATTCAATCGATTAAACGCCAAAGACAGAACCCTCTAGAAGAAGATATTTCTGCTCATCCTGGATCAATCTTGCCATATTCTGGATTAACAGATGACTTCTTAGAGCAGAATGAAACACTGACTACTACGATGGATGATTCTGTGTTGTTGGATACGGATTATTCACCCGTTTTCAACCCTGGAAATGAGAAGACTGTACATATAGCTCCGTCTATTCAGACCAAATTGATTCGTGGTGCTGTCACAAGTAGTATCGTTAGAAGGACGAAGCCACACGAAACACCTGTCTACTCTGGAATCATGGAAGCAGATCAGCACAGCTTTGATGACTATGTTGATGAATTACACCAGGAAACGGCTCTTTCTGACTGGTGTACCGATCCATGCACAGCTGATACGGAAGCCAATGTCAGGAGACTTGCGATTGACCAAAATTTCTCATCAAGCACAAATGGTGCCACTGTCAAGAGGGGCATTACATGTGGCCCAATAGACACGAATATAAGCACGAATACGAACACGTGTAAGAAAACGTCACCATTTGCATTTGTTCCTACTCCTTCAATTGATTTGCAAGATGATGAGCTTACCTTGTACAGCGATGGGGAGCTATATACCAAGAATCATAGCTGTGATGATAGCATCAAGTCCACAATAACGAAGCCGCCAACCCGAAGAATTGGCCTTACAAGATCTATAATGGATACGAAAGAGCCGCAACCATTCACGCCTACGTATGCAAAATTTGCAAGCTCTGCCATGTCATTGGACAATGGAATGAAGTCAATGTGTGGTGAGCTGTATTTTCCAGCAGCAGCCGACTGTGAAACACTGCCAACTCCTACGCGATTAACGAAGATACCAGTCGAATTTAAAAACCTTATAGAGTACAAAAGCGTATTTCGAGCTGCATTAAGAGAGCATCTAAACATTCTACTATTTGATCTTGCTAAATCCTATCATAATGCACTGAAGAGAGCTGAAATAGCTCTGGATTTTGAGAAGAAGTCAGGCTCAAATAACAAATCTGGAAATGTTCCTTCGTGCCCTCATGGCGATTGTACTTTACGCACAGTACGTAAAGATGGACCGAACAAGGGAAAGTTGTTTTACTGCTGTCCAGGAGGTGGCTCGAAACAGTGCAAGTTTTTTATATGGGCTGAGGAATTCCAAAAGAAATCTGCTAGTGGAAAAAATTGTGACGTAATAAAGCAATCAAGAATTGTCCTTTCTGATGCGAAAAGTGTCAACAATTTTTTTAATGGTCAGGGATTGGCATTCTACTGTGCATGTACTTTCGTAAAGAAGAGTAAAAATGGATTCGATGGTGGAAAATTTAAGAAGTGGGGAAAAGGCAGGAATAACAGATTCATGGAGGAATGTGATACTGGCAAAAAGAGTTTATACCTTAGTTTACCCTTCAAAGCAAGCTCATCAACGTACAGTAAAGATGACCTGTGGATCGTATCAAAGAATTTTAACTTTGAACCAGGAAATTCATTCATCGCAAAAAGTACTTTTTATGGACCAAGCTCCTCGGGAGATGTTCAAATAACCGCTGTCAGCTCCTATTGCCCCTCAAATTGGCAGTCTGGAGAAACTGTCCATGCTCTCCTGGCATGCAATGCAGGAACAGAGCTAAGTTGTATTGACAATCTAGAGAGGATCAGTGGCATGAGCGATGTACCAATATTATCGACCCTGATATATCACAATGGTTCTACTGGAAATATCCGTCCTGCTTCGAGTAACAGATTTGTATGTCCCACAGTCAATCGTGCAAATCAGGATTCTGAATGGGATAACGATGAAATAGAGCAGATGATGGAAGATGTTATTTCGAAGTACCATCTAAATGAGGATCAATCTTTGGCCCTTAAGAAGATAACAAATATGTTCACAAGTATGGATAGCGACCGAGCAGAAGAATCTCATACAACACTTATTCATGGTGTGTTCGGAGCTGGTAAGAGCTTTCTTTTGGCAGTTGTCATCATGTTTATGGTTGAACTTTTCAAAATGCGAAGAACAGAGAATAGCAACTCTAATCAAAGCAGCTCCTGGAAAATCTTAGTTTCTTCTACTACCAATGTTGCTGTGGACAGAGTGCTTCAAGGACTCTTGGACCTTGGATTCGACGATTTTGTTCGAGTTGGTAGTGTAAAGAAGATTGCAAAGCCAGTGTTACCATACAGTGTACATGCCACAGGCTCTGATGACCAAGAACTGAAAGAACTTCAAACTATGCTCAAGTCAGATTTGTCTACAGAGGAGAGAGCGTACGTGAGGAAGAGCATCGAAAGACATCGCTTAGGCCTGAATAGAAAGAAACTACAAGAGGTCCCAGTTGTTGGTGTAACATGTGCAGCATCTGTCTTCCAGTGCATGGAGAAGTTATCGTTTAAGGTTCATTTGCTTGATGAATGCAGTCAGATGACAGAACCCCTATCGATGCTCCCGATTGCAAGGTTCAAATGCGAGAAGTTGATACTTGTTGGAGATCCAAAGCAACTAAGTCCTACAATTCAAGGATCAGAAGCCGAACACGAAGATGGCCTTGAGAGAACCTTGTTTGATCGTCTGAAGAAAAAGGGTCACAAACCAATCATGTTGAGAACTCAGTATCGATGCCACCCAATGATAAGTGCAATTCCAAATGAATTATTCTACAATGGTAGGCTATGTGATGGCGTTGCTGCTGATGATAGGCTTCCCTTGATTGACTGGCTTAACCCTGTATGCTTCTACAACGTATCAAAAGGAAAGGAAAAGTGTGGAATTGATGGAAGTTACTTCAACCTGGAAGAGGCTGACTTTGTGGTTTTCCTAATCAATGCAATGCTGACTTTTGGTGTCGACTCAAACAATATTGGAGTTATCACCCAATATAAGTCGCAAGCTCAGAAGATATCATATCTTTTGCAAGAACAAAGTTCAAATGTGGCAACTTCAGAGTTGAAATCAATTCAGATTTCCACTGTAGATGCCTTTCAAGGTGCAGAGAAGGAGATAATCATTCTGTCATGCGTTAGAACAGATCATGTTGGTTTCATAGACTGTGACAGGCGAACGAATGTTGCGTTAAGCCGTGCCAAAAGGCACTTACTAATTGTGGGGAATCTGAAGATTTTAGTTCAAAACCCGTTATGGACTAAAATTATTGAATGCTGTAGTCGTAATCCTGATGGGCTCACTTCATCAAAAGTGTTTACAGAATCGATGCAGCCTAGGCTAAAAGAAATTTTAATATTGGAAGAGCTGGAGAATAAATCAAAAAGTGGGAAAAGATCTTCCAAGAAGTGTAAGAAATATTCAACCAAAAAGGATTCTTGCAACAGTAGCATTAAAAACACTGAAAATGACCGAGATTTAAATCAAATGGACACTGAAGCAACTCCATATTACCAATCTCATCCGTCTTCAACAAACAACTCAAGCAGTTCAAAGGAGCCAGGTACTTCGCTCATAGTTTCAAACAATGATTCACCCATTTGTATAGACGATGATCCCAATGTAGAATTTGACGTTTCTTTTGATTTGCTATGATATTTATTGTAACCCAGCTTTATAACCCCATCCACACTGATGTGGTTTCAAATGAAAATGCATGCATTCGTATCCGTTTTCACTTCTGTGTCCACACTACCACGATCAAAACGTATTTTTTTGTCCAATAAACCCGAGTTCAaccggatgagtaaacaaataattaacac

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13087 all species →	AAA_12	AAA domain	Domain	Interproscan
PF06839 all species →	zf-GRF	GRF zinc finger	Domain	Interproscan
PF10382 all species →	DUF2439	Protein of unknown function (DUF2439)	Family	Interproscan
PF13086 all species →	AAA_11	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041679 all species →	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR010666 all species →	Domain	Zinc finger, GRF-type	Interproscan
IPR018838 all species →	Domain	5'-3' DNA helicase ZGRF1-like, N-terminal domain	Interproscan
IPR045055 all species →	Family	DNA2/NAM7-like helicase	Interproscan
IPR041677 all species →	Domain	DNA2/NAM7 helicase, helicase domain	Interproscan
IPR047187 all species →	Domain	Upf1-like, C-terminal helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10887 all species →	DNA2/NAM7 HELICASE FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0000184 all species →	Biological Process	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold204.g11.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.