Gene detail

Detailed information of scaffold205.g11.t3 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold205:253957...268464
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold205.g11.t3

tcaacagcagccagacaaacgaggcacaattatttgagacaccgcgtagatattcctgtctttttattcccatagaagtggcagtgttatttcaagcttcactgcgacatacgaggaaataagttcaacagagttagtcgttcttgcaacatatctacatgaaaagaaattgcttggctcaatgcctgttggatactcaaatgttagtgctattgatgttcctcctcctccacaatcattaatcacagaggcactaagtcagtccacaatacgtcttcgatgggcatctttcaattcctatctaaacagtgcttcatacaatgtaactggcttcattgtaacgtacaagaagactgcaagtacagatgttcatgcattgaaaaggatcgcaacgccgttgaacacgatgagtcttgatgtcaagcatttagatccatatactttgtacacattcagagtcactgcaatgacaagattatttcttggtattccaagtgattatcatgattcctacacaatgcaaggagctccaacagccgcccctcaaaatatcacagtagacagctatatttgtgaaaatcacatcgatgttcactggtatccaattccagttgataaaaggaatggaaggctacacgaaatccagctcaattacaaagtcatgcgaaacgatttcgaaggaagactttacagtaaagtaaaagaagtttctctatctagcagcgaaaggcaccatagaatttctggcctcaaagtgaacgctgttatttcattacatatgtttggttctacgatgggtgggtctggtgtcgcaagttcagaatatatcggaagaacctgccgttgcagaagaaacatatactcagcttggtttgaaaagaagccgtttgtttatctgcaggggaagcagcatgctggcatatttcctacgttaatggcaaaaatgattcaaaatgtatgtgggtattgccaggcttatggacaccctgtgttgcattataacagaagcagaagtgggcgtagcccaaaacggatttcagaagaaaacttgaaaaagcagttgtctgatgacgtcgacattcattttcctgtgatgtccaacaaaattttgactgtggtagaagaccattaccaatatatacagttaatcgatggagctggctatgttctggtcattctcgaccaagcgaaggttcctaaagctggtcgagttatgaaagctatctttgcatcttatacgctgtggcttgttatggcagtctacgcagtggcatttggcatgctcatttggttcgcggatcagaataagaatccagctgaacttgaaaaggggcatttcttcagaggagtcgggaatggggcttggtgggctttcatcaccatgacaactgttgggtatggtgatatcgcacctaaaggttttcttgggaggcttgcctcggttatatggatgacgattggcattgttttgacttcgatttttaccagcacactttcaactaatatcacggttgcttgtatgagcaagaatgtcatgctgtatgggacaaagatagctgctattcagaattctactgaatattggtttggtgtaaggagagcagcaatgatgcaaactacagattcaaaaggaaagagtttgttgacaccaaaagaagtacttcaagcagtcatctcaaaacaagtaaaaggtgctttgctggaaacaaacgaagcttctactcttctcgacttcatctcagataataacatgcaaataagcaatgtctttgagtcaccaaaaggaattgggatgctactggctggagatttggctaagttgcagtctgagataaggtcatatttcaaagaaaacagggacttgattcagaagttattggataatgaaactaagacatctgaggtgagagtagaaaaacgaagtagtaatggcgtaacaggactattcgattccaactcaatgcttttcaaagagacgttgcattccttgtcgatactctttggatgcttcatcgtcctgggaatcatctggcaattcgtggttcataaattattctcaaatcctgagagggttcaaccgaagaccaaagatcaaatcttccaaggtagagtaattggtgtcctatgacccatcgaaggttcctaattttcaaatcggtgcaaaaaggtggatgtaagattcagcgtcagtcctctcaaggtcaagatgacgtatgaataacttgtggtttcaaattccggtgtttatgtaacacgatatcaactgttatacgatctggccacagggaatcagacagcgtgatttttgattggtcaactctaacagacgctagaatttgaaaatccctgtacctagaaaaacttagtttcttatgctatacacagattaacaggactgggtcataggacactaattactacgcgtacagtaccgggaataaatacacgtccttcaa

Transcript

scaffold205.g11.t3

TCAACAGCAGCCAGACAAACGAGGCACAATTATTTGAGACACCGCGTAGATATTCCTGTCTTTTTATTCCCATAGAAGTGGCAGTGTTATTTCAAGCTTCACTGCGACATACGAGGAAATAAGTTCAACAGAGTTAGTCGTTCTTGCAACATATCTACATGAAAAGAAATTGCTTGGCTCAATGCCTGTTGGATACTCAAATGTTAGTGCTATTGATGTTCCTCCTCCTCCACAATCATTAATCACAGAGGCACTAAGTCAGTCCACAATACGTCTTCGATGGGCATCTTTCAATTCCTATCTAAACAGTGCTTCATACAATGTAACTGGCTTCATTGTAACGTACAAGAAGACTGCAAGTACAGATGTTCATGCATTGAAAAGGATCGCAACGCCGTTGAACACGATGAGTCTTGATGTCAAGCATTTAGATCCATATACTTTGTACACATTCAGAGTCACTGCAATGACAAGATTATTTCTTGGTATTCCAAGTGATTATCATGATTCCTACACAATGCAAGGAGCTCCAACAGCCGCCCCTCAAAATATCACAGTAGACAGCTATATTTGTGAAAATCACATCGATGTTCACTGGTATCCAATTCCAGTTGATAAAAGGAATGGAAGGCTACACGAAATCCAGCTCAATTACAAAGTCATGCGAAACGATTTCGAAGGAAGACTTTACAGTAAAGTAAAAGAAGTTTCTCTATCTAGCAGCGAAAGGCACCATAGAATTTCTGGCCTCAAAGTGAACGCTGTTATTTCATTACATATGTTTGGTTCTACGATGGGTGGGTCTGGTGTCGCAAGTTCAGAATATATCGGAAGAACCTGCCGTTGCAGAAGAAACATATACTCAGCTTGGTTTGAAAAGAAGCCGTTTGTTTATCTGCAGGGGAAGCAGCATGCTGGCATATTTCCTACGTTAATGGCAAAAATGATTCAAAATGTATGTGGGTATTGCCAGGCTTATGGACACCCTGTGTTGCATTATAACAGAAGCAGAAGTGGGCGTAGCCCAAAACGGATTTCAGAAGAAAACTTGAAAAAGCAGTTGTCTGATGACGTCGACATTCATTTTCCTGTGATGTCCAACAAAATTTTGACTGTGGTAGAAGACCATTACCAATATATACAGTTAATCGATGGAGCTGGCTATGTTCTGGTCATTCTCGACCAAGCGAAGGTTCCTAAAGCTGGTCGAGTTATGAAAGCTATCTTTGCATCTTATACGCTGTGGCTTGTTATGGCAGTCTACGCAGTGGCATTTGGCATGCTCATTTGGTTCGCGGATCAGAATAAGAATCCAGCTGAACTTGAAAAGGGGCATTTCTTCAGAGGAGTCGGGAATGGGGCTTGGTGGGCTTTCATCACCATGACAACTGTTGGGTATGGTGATATCGCACCTAAAGGTTTTCTTGGGAGGCTTGCCTCGGTTATATGGATGACGATTGGCATTGTTTTGACTTCGATTTTTACCAGCACACTTTCAACTAATATCACGGTTGCTTGTATGAGCAAGAATGTCATGCTGTATGGGACAAAGATAGCTGCTATTCAGAATTCTACTGAATATTGGTTTGGTGTAAGGAGAGCAGCAATGATGCAAACTACAGATTCAAAAGGAAAGAGTTTGTTGACACCAAAAGAAGTACTTCAAGCAGTCATCTCAAAACAAGTAAAAGGTGCTTTGCTGGAAACAAACGAAGCTTCTACTCTTCTCGACTTCATCTCAGATAATAACATGCAAATAAGCAATGTCTTTGAGTCACCAAAAGGAATTGGGATGCTACTGGCTGGAGATTTGGCTAAGTTGCAGTCTGAGATAAGGTCATATTTCAAAGAAAACAGGGACTTGATTCAGAAGTTATTGGATAATGAAACTAAGACATCTGAGGTGAGAGTAGAAAAACGAAGTAGTAATGGCGTAACAGGACTATTCGATTCCAACTCAATGCTTTTCAAAGAGACGTTGCATTCCTTGTCGATACTCTTTGGATGCTTCATCGTCCTGGGAATCATCTGGCAATTCGTGGTTCATAAATTATTCTCAAATCCTGAGAGGGTTCAACCGAAGACCAAAGATCAAATCTTCCAAGgtagagtaattggtgtcctatgacccatcgaaggttcctaattttcaaatcggtgcaaaaaggtggatgtaagattcagcgtcagtcctctcaaggtcaagatgacgtatgaataacttgtggtttcaaattccggtgtttatgtaacacgatatcaactgttatacgatctggccacagggaatcagacagcgtgatttttgattggtcaactctaacagacgctagaatttgaaaatccctgtacctagaaaaacttagtttcttatgctatacacagattaacaggactgggtcataggacactaattactacgcgtacagtaccgggaataaatacacgtccttcaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07885 all species →	Ion_trans_2	Ion channel	Family	Interproscan
PF00060 all species →	Lig_chan	Ligand-gated ion channel	Family	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR013099 all species →	Domain	Potassium channel domain	Interproscan
IPR001320 all species →	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11537 all species →	VOLTAGE-GATED POTASSIUM CHANNEL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0015276 all species →	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005249 all species →	Molecular Function	voltage-gated potassium channel activity	Interproscan
GO:0005251 all species →	Molecular Function	delayed rectifier potassium channel activity	Interproscan
GO:0008076 all species →	Cellular Component	voltage-gated potassium channel complex	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0071805 all species →	Biological Process	potassium ion transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05198	GRIA2; glutamate receptor 2	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.