Gene detail

Detailed information of scaffold205.g7.t3 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold205:171318...206114
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold205.g7.t3

gttaagaattattgccgtggtttaatttcctttgttgatacttactgtcttcaatttattttcctcaagttcaatttctttcattttttgttcatatttccatttctcaatttcagttcctttgacaagtggatcaggcatgatgggtccttctatttctcggttttcttcacacaaatcaacttcttgttcatttgtcatacaatacaaatataaattgtaatgacgaaatagatgaccaaggttgtaatcaatgagttttttgacttcatccacgaaaaagtcatttgatatgtctgtcaattttgatttgaagacatctatggctgattcagctgggatccctgaaaaaggcacaatgcagaaggttaaatctcatttttatgacaacgaagatattcttttgcaaacagggcagtcacaaataggggatggagtttgaaagtatgccacatctaagcaatatctgtcagccaaggtaactcagataatctctttcaaataaaaatttaaataagaagaaaataaatagaatctacaacatcaactttgagaagcatatagtttcttttaatcacaatttctgttttcttcttttttacttgttatagttaggaaaatccgaaaaaaggttttaatggttcagattatcattttcttttgtctttttaaactttttttaagaggttggcaggcaatttctgaattttatcttttcatttcaaagccaatggttttctacatctggtattttttgctctttccaaaatgcattatccacacctttacaacacgattcttgtagcaaattcagcgcaaattttgcagctttttcaactttctcccatgcaaagccttgatttgaagcaaaaataattgcctcaaggcagtagtcaataacaatggactttagaagttcatcttcctcatcaatttgatgaatgcaaagtgcactcagtagagtctgtctcttgaggtctttggatgaagcagcatggattcttctgtaatcgtcttgggaaagtattgacagatttatattgtcagtcatcttggatggatctctggaaggatggcatgtgcctttggaaaattaggcctaaaatttaactctttatctcttcctttttagacgggtgacaacaaagtgggggcatgaaatgcggtaatgccaaggagagcgagatttctagtttcatggacagatgtattgataaggagaactcgaagccttttgtcttttcttctgcaatttcatcgaaatacaatactcaatcagctgttgtcagtccgccatcttgcagcttgcagcaataatcactatggtaactgcctcgatttcactttcccgcttatctttgcatttcgaattctgcattcacaacaaaacaaaatggttccacgaagcaaatcatacagaaattaaagttggccttccccggagcttgaacaaagatgaaggcatgctgcaatgctggtggcagaggctaaggtattagacatctcaaggaaagctgaagaagctggcatcttgaacatatgatatggcagaagcagcttcaagccaagcaaatcagcagaaggaaagaaagcagaagaaaaagagaacaccaacaagtctgaataactcgggtgaacgtcgtggatctcaagaaagcttgctccaagaagatgacagaaaagaaaacccaaaattatccagagcaaggcaaagaacaagagaaagatttgaatctttgctgcaagcagctgcagaggaaggcctggcagaggaagccgagaagacaaagaaaaagaagaaaaggacgaaaactgctgattctctgttgtctgaactaaagtctggtgcaccattcttgaaagagagatcaaagtctgaagaacgtttgttagctgaaaacctgtacaatgaagtcatagtcacaatcaattttctaacattgtctgaactaaagtctggtgcaccattcttgaaagagagatcaaagtctgaagaacgtttgttagctgaaaacctgtacaaagaagatacaactcctaagtttaagaagaagaaagcaaaagaaccattgcaagatgatactaataaagatcaattacagttgcctttggaagatgaaaaagatagcacaaaacagaagagaaagacgaagaagaaaggttcacgaaagaaacagaaagaggatggtgctgcaaacaatgaaggcgaagaaactggcaaagaaaatatcgcttatgatcagagccctttgaaggaagaggtagatggccctggatcagttgcgaagcgaaagaaaaagaaaaagcggcaaaatacagagccggccggtgaagtaatcgaaagagccctccagaggaagagaagagacgatggctatcttctgtgcatcgaaatacacaaagcagaccgattgaaaccggacataaatgtgttacatccatgtatcagggttcatgtcgtcgatatcaacactggacaatatgtgaaaaaaagtgacagacaaagaaatgttgcttccgtatttgaaggtcaaaatgaatcggttgattacataatgccgttaataacacagccatatgacttcaggaaagagaggtccatgcttccttgttggcaagaagtcttgctttacaatgagatatattcgtacttcctacaaagagaagaaggggatccagacgttatcatattctttgagattatggacttcttgagtatgtcatctgtcctgagaggaagacaacaaggggctgaacagggatggttcaagatagcatgggcatttttgaaggttgtaagtaccaacggaagcccaaacacagatcgaaaagttcgtctgcagttttatcagccaccaacgagactaagagtgaggaatcctttgcctggagccattcaggtcttccagtggtggcaatcaacagaacgaattgcatatccctctactttatatgttactgtgaaaggtattcgaccccctgacaacattgatgcagctactagatctatgtaccctattcaggaggaaagaggaaaagttacttttgaagagctcaatagtacgctggatggtgtgaatgcacgcaaaaggccttccttgtctttagaccaaaagcatatttggaatcggctaccaggacaagcaaatagaataccaaataaattggctttaattctaccgactggaagaaagggatgttctgtttcgagattttcccctgatggaagaatccttgcctgtgcttgcgcaggagcagatggatatccagtactcgtgtatgagattccatctggcacattgcaaggcgaactttctggtcactttggtatcgtatacgacatgtcgtggacacctgatagcaaggaattattgactgcttcgtcagatggaactgtcaggagctgggatgtgaatcgatttgtcagcaacgccataaagctgtatcctcacccctcatttgtgtatgctgcgaggcatcatcctacgtcatataatttgattgtcagcgggggatatgacagagttgtgagagtgtggagtaaaaccacggataatctgcatggaaagcttcttcgtgaaatgactggacataatggatttatcaatacaatcacattccagccatcaggagaccaaatgtattcaggagacagcactggtgtgattattatttggaactgctccgtttctgatggaaagagaaagtccaaagctgcagctgacgaggaaaatgtcaagagctggagagttgcacagaccctgaagcttgaagagataaagaacactccaataaattcattaaccttgcatcctggtggaagaaagatgctagttcatgcgagagatgcctttattcgtatgcttgatctgagaagctctgcaataatgaaaagataccttggagccttgaaccagaaggagcacatcaggagtacgacatccacctgtggaaattttgttatttctggctccgaagatggtacagcatacgtttggaactccgaaacaggtgacccagtctacgaatatgatgaccttgggtacacaaatgctgttagcgatgcacactttcacccgcacgaaaacatggttgtgttttgttcattcggagctggacaccctgtgcttgtgtatatatttgatatggaagagcaaatgaagtctactaagctaaatgaaacaacagcaacaacattaagagatgaccaagggaatctaacctcgggacaaacaatggattcgacactgcgaagccttcacagaccactcagtcaagttagcgatggaggagacatcgagaaggaaagacttcgtgcagagaagatgaagcaacgaatggcttcagttatggattcaaatagaacgccagagcctgcatctaccacgagaacaagtgctcacccgcaaaagagtggtgtcagatttggagaaacgtctgatacgatgatgacatggggctcagactttgcttcaacactgccatctccatctccatattccagggtgatagcgatctatgcttatgaaccaaatcgtgctgatgaactgcaactcaaaccaaatgacattatcactgtcgtgtttgaagacaatgaaaattggtggatgggagaattacctgatggaagacaaggatattttcctaccaattatgtaatggatcaagaagaagatttgagggaagtctccagcaccagagagaatgccgacagctcaaggatatcacattcagcagtaatgtcaaaggatggagacttgaagattatttctatgccagaagatagtgaaaatgaagcaagatcaacgcaaaaacgaaaacaacgaagaagaaaggcacatcgatcgaatgaagatagcatgaaatgacattctgtgaataaacaacatcttacagatgacagcattgcaaaattgcaagattaaacgcagtgtaaatag

Transcript

scaffold205.g7.t3

GTTAAGAATTATTGCCGTGGTTTAATTTCCTTTGTTGATACTTACTGTCttcaatttattttcctcaagttcaatttctttcattttttgttcatatttccatttctcaatttcagttCCTTTGACAAGTGGATCAGGCATGATGGGTCCTTCTATTTCTCGGTTTTCTTCACACAAATCAACTTCTTGTTCATTTGTCATACAATACAAATATAAATTGTAATGACGAAATAGATGACCAAGGTTGTAATCAATGAGTTTTTTGACTTCATCCACGAAAAAGTCATTTGATATGTCTGTCAATTTTGATTTGAAGACATCTATGGCTGATTCAGCTGGGATCCCTGAAAAAGGCACAATGCAGAAGGTTAAATCTCATTTTTATGACAACGAAGATATTCTTTTGCAAACAGGGCAGTCACAAATAGGGGATGGAGTTTGAAAGTATGCCACATCTAAGCAATATCTGTCAGCCAAGGTAACTCAGATAATCTCTTTCaaataaaaatttaaataagaagaaaataaaTAGAATCTACAACATCAACTTTGAGAAGCATATAGTTTCTTTTAATCACAATTTCTGTTTTCTTCTTTTTTACTTGTTATAGTTAGGAAAATCCGAAAAAAGGTTTTAATGGTTCAGATTATCATTTTCTTTTGTCTTTTTAAACTTTTTTTAAGAGGTTGGCAGGCAATTTCTGAATTTTATCTTTTCATTTCAAAGCCAATGGTTTTCTACATCTGGTATTTTTTGCTCTTTCCAAAATGCATTATCCACACCTTTACAACACGATTCTTGTAGCAAATTCAGCGCAAATTTTGCAGCTTTTTCAACTTTCTCCCATGCAAAGCCTTGATTTGAAGCAAAAATAATTGCCTCAAGGCAGTAGTCAATAACAATGGACTTTAGAAGTTCATCTTCCTCATCAATTTGATGAATGCAAAGTGCACTCAGTAGAGTCTGTCTCTTGAGGTCTTTGGATGAAGCAGCATGGATTCTTCTGTAATCGTCTTGGGAAAGTATTGACAGATTTATATTGTCAGTCATCTTGGATGGATCTCTGGAAGGATGGCATGTGCCTTTGGAAAATTAGGCCTAAAATTTAACTCTTTATCTCTTCCTTTTTAGACGGGTGACAACAAAGTGGGGGCATGAAATGCGGTAATGCCAAGGAGAGCGAGATTTCTAGTTTCATGGACAGATGTATTGATAAGGAGAACTCGAAGCCTTTTGTCTTTTCTTCTGCAATTTCATCGAAATACAATACTCAATCAGCTGTTGTCAGTCCGCCATCTTGCAGCTTGCAGCAATAATCACTATGGTAACTGCCTCGATTTCACTTTCCCGCTTATCTTTGCATTTCGAATTCTGCATTCACAACAAAACAAAATGGTTCCACGAAGCAAATCATACAGAAATTAAAGTTGGCCTTCCCCGGAGCTTGAACAAAGATGAAGGCATGCTGCAATGCTGGTGGCAGAGGCTAAGGTATTAGACATCTCAAGGAAAGCTGAAGAAGCTGGCATCTTGAACATATGATATGGCAGAAGCAGCTTCAAGCCAAGCAAATCAGCAGAAGGAAAGAAAGCAGAAGAAAAAGAGAACACCAACAAGTCTGAATAACtcgGGTGAACGTCGTGGATCTCAAGAAAGCTTGCTCCAAGAAGATGACAGAAAAGAAAACCCAAAATTATCCAGAGCAAGGCAAAGAACAAGAGAAAGATTTGAATCTTTGCTGCAAGCAGCTGCAGAGGAAGGCCTGGCAGAGGAAGCCGAGAAGACAAAGAAAAAGAAGAAAAGGACGAAAACTGCTGATTCTCTGTTGTCTGAACTAAAGTCTGGTGCACCATTCTTGAAAGAGAGATCAAAGTCTGAAGAACGTTTGTTAGCTGAAAACCTGTACAATGAAGTCATAGTCACAATCAATTTTCtaacaTTGTCTGAACTAAAGTCTGGTGCACCATTCTTGAAAGAGAGATCAAAGTCTGAAGAACGTTTGTTAGCTGAAAACCTGTACAAAGAAGATACAACTCCTAAGTTTAAGAAGAAGAAAGCAAAAGAACCATTGCAAGATGATACTAATAAAGATCAATTACAGTTGCCTTTGgaagatgaaaaagatagcacaaaacagaagagaaagacgaagaagaaAGGTTCACGAAAGAAACAGAAAGAGGATGGTGCTGCAAACAATGAAGGCGAAGAAACTGGCAAAGAAAATATCGCTTATGATCAGAGCCCTTTGAAGGAAGAGGTAGATGGCCCTGGATCAGTTGCGAAGCGAAAGAAAAAGAAAAAGCGGCAAAATACAGAGCCGGCCGGTGAAGTAATCGAAAGAGCCCTCCAGAGGAAGAGAAGAGACGATGGCTATCTTCTGTGCATCGAAATACACAAAGCAGACCGATTGAAACCGGACATAAATGTGTTACATCCATGTATCAGGGTTCATGTCGTCGATATCAACACTGGACAATATGTGAAAAAAAGTGACAGACAAAGAAATGTTGCTTCCGTATTTGAAGGTCAAAATGAATCGGTTGATTACATAATGCCGTTAATAACACAGCCATATGACTTCAGGAAAGAGAGGTCCATGCTTCCTTGTTGGCAAGAAGTCTTGCTTTACAATGAGATATATTCGTACTTCCTACAAAGAGAAGAAGGGGATCCAGACGTTATCATATTCTTTGAGATTATGGACTTCTTGAGTATGTCATCTGTCCTGAGAGGAAGACAACAAGGGGCTGAACAGGGATGGTTCAAGATAGCATGGGCATTTTTGAAGGTTGTAAGTACCAACGGAAGCCCAAACACAGATCGAAAAGTTCGTCTGCAGTTTTATCAGCCACCAACGAGACTAAGAGTGAGGAATCCTTTGCCTGGAGCCATTCAGGTCTTCCAGTGGTGGCAATCAACAGAACGAATTGCATATCCCTCTACTTTATATGTTACTGTGAAAGGTATTCGACCCCCTGACAACATTGATGCAGCTACTAGATCTATGTACCCTATTCAGGAGGAAAGAGGAAAAGTTACTTTTGAAGAGCTCAATAGTACGCTGGATGGTGTGAATGCACGCAAAAGGCCTTCCTTGTCTTTAGACCAAAAGCATATTTGGAATCGGCTACCAGGACAAGCAAATAGAATACCAAATAAATTGGCTTTAATTCTACCGACTGGAAGAAAGGGATGTTCTGTTTCGAGATTTTCCCCTGATGGAAGAATCCTTGCCTGTGCTTGCGCAGGAGCAGATGGATATCCAGTACTCGTGTATGAGATTCCATCTGGCACATTGCAAGGCGAACTTTCTGGTCACTTTGGTATCGTATACGACATGTCGTGGACACCTGATAGCAAGGAATTATTGACTGCTTCGTCAGATGGAACTGTCAGGAGCTGGGATGTGAATCGATTTGTCAGCAACGCCATAAAGCTGTATCCTCACCCCTCATTTGTGTATGCTGCGAGGCATCATCCTACGTCATATAATTTGATTGTCAGCGGGGGATATGACAGAGTTGTGAGAGTGTGGAGTAAAACCACGGATAATCTGCATGGAAAGCTTCTTCGTGAAATGACTGGACATAATGGATTTATCAATACAATCACATTCCAGCCATCAGGAGACCAAATGTATTCAGGAGACAGCACTGGTGTGATTATTATTTGGAACTGCTCCGTTTCTGATGGAAAGAGAAAGTCCAAAGCTGCAGCTGACGAGGAAAATGTCAAGAGCTGGAGAGTTGCACAGACCCTGAAGCTTGAAGAGATAAAGAACACTCCAATAAATTCATTAACCTTGCATCCTGGTGGAAGAAAGATGCTAGTTCATGCGAGAGATGCCTTTATTCGTATGCTTGATCTGAGAAGCTCTGCAATAATGAAAAGATACCTTGGAGCCTTGAACCAGAAGGAGCACATCAGGAGTACGACATCCACCTGTGGAAATTTTGTTATTTCTGGCTCCGAAGATGGTACAGCATACGTTTGGAACTCCGAAACAGGTGACCCAGTCTACGAATATGATGACCTTGGGTACACAAATGCTGTTAGCGATGCACACTTTCACCCGCACGAAAACATGGTTGTGTTTTGTTCATTCGGAGCTGGACACCCTGTGCTTGTGTATATATTTGATATGGAAGAGCAAATGAAGTCTACTAAGCTAAATGAAACAACAGCAACAACATTAAGAGATGACCAAGGGAATCTAACCTCGGGACAAACAATGGATTCGACACTGCGAAGCCTTCACAGACCACTCAGTCAAGTTAGCGATGGAGGAGACATCGAGAAGGAAAGACTTCGTGCAGAGAAGATGAAGCAACGAATGGCTTCAGTTATGGATTCAAATAGAACGCCAGAGCCTGCATCTACCACGAGAACAAGTGCTCACCCGCAAAAGAGTGGTGTCAGATTTGGAGAAACGTCTGATACGATGATGACATGGGGCTCAGACTTTGCTTCAACACTGCCATCTCCATCTCCATATTCCAGGGTGATAGCGATCTATGCTTATGAACCAAATCGTGCTGATGAACTGCAACTCAAACCAAATGACATTATCACTGTCGTGTTTGAAGACAATGAAAATTGGTGGATGGGAGAATTACCTGATGGAAGACAAGGATATTTTCCTACCAATTATGTAATGGATCAAGAAGAAGATTTGAGGGAAGTCTCCAGCACCAGAGAGAATGCCGACAGCTCAAGGATATCACATTCAGCAGTAATGTCAAAGGATGGAGACTTGAAGATTATTTCTATGCCAGAAGATAGTGAAAATGAAGCAAGATCAACGCAAAAACGAAAACAACGAAGAAGAAAGGCACATCGATCGAATGAAGATAGCATGAAATGACATTCTGTGAATAAACAACATCTTACAGATGACAGCATTGCAAAATTGCAAGATTAAACGCAGTGTAAATAG

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR052803 all species →	Family	Primary Cilium-Associated Jouberin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44499 all species →	JOUBERIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0044458 all species →	Biological Process	motile cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16740	AHI1; jouberin	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.