Gene detail

Detailed information of scaffold2071.g1.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold2071:418...34624
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold2071.g1.t2

agggtggggtaatgtgggtctacggggtaaagtgggtctactgagcttttcgctagaaatatcctttctcgttagatggaagaaagactggctatttttcttttaatgtatgcataataaactgcctttttacataaaatattcgtcttaaatatatctccactcgttttataaaataactttactgagcggcctattgtgcaagaatttcaaagcccaagaaaactttctcctgccactgttgtttagcttttctggtccatttaatgaccatgaggtgagagtttggtcttttacaaatgaaataaagtttagtttgaagtcattgacgcgattgttctttttatatttatttttttaccaggtggggtaatgtgggcctactgagaattcagccgtaattcaaattcagcgaagccttgaattgcttaaaatttgcgcacttatattcatcttgccacgttgttttctgtctaaaatgcgaaaacgggtttcctattaccgcagttgctgtcttgtaaccactaaattggagtaaacatactgcaaacatctttatttgactgttattatcaaattcgatcactgacttgcaagtcgcaacgatggtggatcacagcataatgaccgtagttttattttcgtcgcgggaacgggattgcttgtgataaaaggcaaagactgtgattttctcgaatagagaatagttgggaaatataaggccattaattttttaatcatttaggctgtcatcttccgattctgtacaaattttgaaaatagacccactttttccactcgtcggaaaaagtgggcctattttagttgtcaaaggagaaaatttttaaaaaatatttaactgcctttgtcagagctgagattttttcccaagaaagaggaagcaccgaatgtcaattaaacgaaacttttgaaatgttttgcatgttagtttcgttttgctagctatccattttgtgattttgctcattttagacccacattaccccaccctaccctatttcagttcacatagaaaccgtagatgcattgaatcttgacgaaaagaaactttggcagaaacacgataacaagaacaattgaaaacgcggatgtcggcgttttcgggccagctcacggctgcggcgcgcgggctcgcagctgaatccggcccaagctattcagtctggaatgattcaccaagtgcttggtaacgttggtgtttgtcctaccttgccaagtgaaattagatcttcttttcctgtttcatcgggagtgcagcacaggcagaaagaacattcaactgacggcacgaaaaacgagcctgtctttgatgcagctggccagcaagtaaacattagcacggttattgccgaccgactgcaggtccaaacagctcttgcttcaaacccgtttaatattgaagccattgcaaagttaagagactgtgacgataagataaagaagtggagcaagtcgggcttgaaaccggcccagtttactggtgaaaaaaccaagaatattctaactagggaagaattagagggtggttacagtgcctgggtaagaaaggacttctttaaccacttgaagccaatacgtgatggggttggtctacgactgttgcagaagatgggatggacgcttggacaacctttggggaagaatcgagctggtttcttaaatcccattacatttgaagtaaggaccgatcggagaggattatcaactgctgaagaaacagaagtatccctgaaggcgaagaggaaaggcccacctgttgtggaagtacaaggaaaacacccagtatccgccctctcagaattatgttcaaagcgaaaatggggacaggctgattacaagctgataagtgatgccggacctcctagcagtaagaattttctcttcatggttacagtcaacggacaagactttagtcccctttctcctagtcctaataagaagaacgcgaaggcacaggcagccacagctgctcttcaaaaacttggtttgatagcttgaaagatgtttgtcaattgtaagaagcaaatattgaagtaaacagcttaattatggctcagactacgagcagtaagaaaagaaagcttagcgttttgtctgatattttaaaaattgtcatcctgtttctttcatgtcgtaaatgtgggtttggagtagcatttcaatactactgtatctaacctctattaccagtttatttgcttttggcagcagaataaatttcagctagattccactgccaaactttgttcaagcatttcttttgtgacacagaccgggtaattcaaaaaatatttcagcgtttgaaaaaatgccaaaattcaagaattccactgatgttaaatttctcttatgtgttgcatcaactatcatattatttagggatactgaatatcctattaacggaacggttttcaattgcggaactactgaattatttgctacctggttttgcagcttaccttgaaactgcatagaatgttaagtaggtctatcgctcattctttcgagttctttgacatcgttgattacattaaatattaatctcatgatcactccggagaacgtgtgtgcagtgaaggtggagggtgcccaagggtgccaagtaaggcagagggaaatcagcagtaagtcagaggaataccattagtaaatcgaaaggtgcacagtatcgccgagggataccatcagtaaggtggcaggataccatttttcctgtggaaggataccatcgcccaaaaaatataggacatagaattgtttaacagaaagatatcgagaacacgataaagatcagctattaaaatggggctttagttttcgtttgtttgattttggtaaatgccctcagagtatttgagttgcacatgacttttcactgacagtcatgatagagtttcatttttcagtttacagtcaagaattgcattatttctcatcatgatgaaagctagatgaaacgttaaaagaaaaccaagacaaacctgaaagaatgtttctgaaagcaagcctaaactgattacaatgagtcccagtaatcgctgtttaaggcgagactactacaccataccaagaccgctcatactgggacttttttggcctgacttttttcacttttgagcgccctttcgaacgaggctgctatacgcaatcatgtatggggtatacaaaatgatacaacgctataagaatttctgcaaattcgattgattgatgttgaccaacgaaaactccaagctcaaagcagagtttcaaggaacttgggctgacataacaaagtcttacgaacaagaaaacgatgaaacagttggcgacaatgtaaaacctagtacgtatgtactattgtgttgcttttgcttagcattaactgatttattgtgaagttttaaagtcaatgtgtttcatttgatgtaaggcttgcaatgatattccagttaatatcagagaactgtcatcgcttcgcctgtttaaaatacatctgaaaaggcatttgacgagcctcgataattaattcagcccccccccccaagaacgactccctgaagatcaagtttaattttctattatgcttatatttttagttgagacctgtaagtttatatttgttattttactgaagggatatcgttgtaatgaattatatgtataccgggtgcgccaaaatagattatgcacttctgg

Transcript

scaffold2071.g1.t2

agggtggggtaatgtgggtctacggggtaaagtgggtctactgagcttttcgctagaaatatcctttctcgttagatggaagaaagactggctatttttcttttaatgtatgcataataaactgcctttttacataaaatattcgtcttaaatatatctccactcgttttataaaataactttactgagcggcctattgtgcaagaatttcaaagcccaagaaaactttctcctgccactgttgtttagcttttctggtccatttaatgaccatgaggtgagagtttggtcttttacaaatgaaataaagtttagtttgaagtcattgacgcgattgttctttttatatttatttttttaccaggtggggtaatgtgggcctactgagaattcagccgtaattcaaattcagcgaagccttgaattgcttaaaatttgcgcacttatattcatcttgccacgttgttttctgtctaaaatgcgaaaacgggtttcctattaccgcagttgctgtcttgtaaccactaaattggagtaaacatactgcaaacatctttatttgactgttattatcaaattcgatcactgacttgcaagtcgcaacgatggtggatcacagcataatgaccgtagttttattttcgtcgcgggaacgggattgcttgtgataaaaggcaaagactgtgattttctcgaatagagaatagttgggaaatataaggccattaattttttaatcatttaggctgtcatcttccgattctgtacaaattttgaaaatagacccactttttccactcgtcggaaaaagtgggcctattttagttgtcaaaggagaaaatttttaaaaaatatttaactgcctttgtcagagctgagattttttcccaagaaagaggaagcaccgaatgtcaattaaacgaaacttttgaaatgttttgcatgttagtttcgttttgctagctatccattttgtgattttgctcattttagacccacattaccccaccctaccctatttcagttcacatagaaaccgtagatgcattgaatcttgacgaaaagaaactttggcagaaacacgataacaagaacaattgaaaacgcggatgtcggcgttttcgggccagctcacggctgcggcgcgcgggctcgcagctgAATCCGGCCCAAGCTATTCAGTCTGGAATGATTCACCAAGTGCTTGGTAACGTTGGTGTTTGTCCTACCTTGCCAAGTGAAATTAGATCTTCTTTTCCTGTTTCATCGGGAGTGCAGCACAGGCAGAAAGAACATTCAACTGACGGCACGAAAAACGAGCCTGTCTTTGATGCAGCTGGCCAGCAAGTAAACATTAGCACGGTTATTGCCGACCGACTGCAGGTCCAAACAGCTCTTGCTTCAAACCCGTTTAATATTGAAGCCATTGCAAAGTTAAGAGACTGTGACGATAAGATAAAGAAGTGGAGCAAGTCGGGCTTGAAACCGGCCCAGTTTACTGGTGAAAAAACCAAGAATATTCTAACTAGGGAAGAATTAGAGGGTGGTTACAGTGCCTGGGTAAGAAAGGACTTCTTTAACCACTTGAAGCCAATACGTGATGGGGTTGGTCTACGACTGTTGCAGAAGATGGGATGGACGCTTGGACAACCTTTGGGGAAGAATCGAGCTGGTTTCTTAAATCCCATTACATTTGAAGTAAGGACCGATCGGAGAGGATTATCAACTGCTGAAGAAACAGAAGTATCCCTGAAGGCGAAGAGGAAAGGCCCACCTGTTGTGGAAGTACAAGGAAAACACCCAGTATCCGCCCTCTCAGAATTATGTTCAAAGCGAAAATGGGGACAGGCTGATTACAAGCTGATAAGTGATGCCGGACCTCCTAGCAGTAAGAATTTTCTCTTCATGGTTACAGTCAACGGACAAGACTTTAGTCCCCTTTCTCCTAGTCCTAATAAGAAGAACGCGAAGGCACAGGCAGCCACAGCTGCTCTTCAAAAACTTGGTTTGATAGCTTGAAAGATGTTTGTCAATTGTAAGAAGCAAATATTGAAGTAAACAGCTTAATTATGGCTCAGACTACGAGCAGTAAGAAAAGAAAGCTTAGCGTTTTGTCTGATATTTTAAAAATTGTCATCCTGTTTCTTTCATGTCGTAAATGTGGGTTTGGAGTAGCATTTCAATACTACTGTATCTAACCTCTATTACCAGTTTATTTGCTTTTGGCAGCAGAATAAATTTCAGCTAGATTCCACTGCCAAACTTTGTTCAAGCATTTCTTTTGTGACACAGACCGGGTAATTCAAAAAATATTTCAGCGTTTGAAAAAATGCCAAAATTCAAGAATTCCACTGATGTTAAATTTCTCTTATGTGTTGCATCAACTATCATATTATTTAGGGATACTGAATATCCTATTAACGGAACGGTTTTCAATTGCGGAACTACTGAATTATTTGCTACCTGGTTTTGCAGCTTACCTTGAAACTGCATAGAATGTTAAGTAGGTCTATCGCTCATTCTTTCGAGTTCTTTGACATCGTTGATTACATTAAATATTAATCTCATGATCACTCCGGAGAACGTGTGTGCAGTGAAGGTGGAGGGTGCCCAAGGGTGCCAAGTAAGGCAGAGGGAAATCAGCAGTAAGTCAGAGGAATACCATTAGTAAATCGAAAGGTGCACAGTATCGCCGAGGGATACCATCAGTAAGGTGGCAGGATACCATTTTTCCTGTGGAAGGATACCATCGCCCAAAAAATATAGGACATAGAATTGTTTAACAGAAAGATATCGAGAACACGATAAAGATCAGCTATTAAAATGGGGCTTTAGTTTTCGTTTGTTTGATTTTGGTAAATGCCCTCAGAGTATTTGAGTTGCACATGACTTTTCACTGACAGTCATGATAGAGTTTCATTTTTCAGTTTACAGTCAAGAATTGCATTATTTCTCATCATGATGAAAGCTAGATGAAACGTTAAAAGAAAACCAAGACAAACCTGAAAGAATGTTTCTGAAAGCAAGCCTAAACTGATTACAatgagtcccagtaatcgctgtttaaggcgagactactacaccataccaagaccgctcatactgggacttttttggcctgacttttttcacttttgagcgccctttcgaacgaggctgctatacgcaatcatgtatggggtatacaaaatgatacaacgctataagaatttctgcaaattcgattgattgatgttgaccaacgaaaactccaagctcaaagcagagtttcaaggaacttgggctgacataacaaagtcttacgaacaagaaaacgatgaaacagttggcgacaatgtaaaacctagtacgtatgtactattgtgttgcttttgcttagcattaactgatttattgtgaagttttaaagtcaatgtgtttcatttgaTGtaaggcttgcaatgatattccagttaatatcagagaactgtcatcgcttcgcctgtttaaaatacatctgaaaaggcatttgacgagcctcgataattaattcagcccccccccccaagaacgactccctgaagatcaagtttaattttctattatgcttatatttttagttgagacctgtaagtttatatttgttattttactgaagggatatcgttgtaatgaattatatgtAtaccgggtgcgccaaaatagattatgcacttctgg

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01585 all species →	G-patch	G-patch domain	Family	Interproscan
PF00035 all species →	dsrm	Double-stranded RNA binding motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000467 all species →	Domain	G-patch domain	Interproscan
IPR014720 all species →	Domain	Double-stranded RNA-binding domain	Interproscan
IPR032922 all species →	Family	Protein SON	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46528 all species →	PROTEIN SON	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0043484 all species →	Biological Process	regulation of RNA splicing	Interproscan
GO:0048024 all species →	Biological Process	regulation of mRNA splicing, via spliceosome	Interproscan
GO:0051726 all species →	Biological Process	regulation of cell cycle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold2071.g1.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.