Gene detail

Detailed information of scaffold209.g4.t3 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold209:85400...96344
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold209.g4.t3

ccttgacaaagaaagagaaccagccatttaatctgtgacatcttgtcgttttactgcgtctcgtaaatcgtctgaatgaagacccgctgaagactgtctgaagaagcacgaaaatgctctccttcgttatgtttctgatgcaaggttattcccctacctatctggcttcaagaggaatggaatgcgaatgacaattgacttctttgaaaagaactacctgtccttttattgttcttactcgttccaaagtctctgtggtctatgataatattgactcattttagtttagattgatctatggattgataaaaaaagccacttaccatgcaaaattggagactctagggaggagtaactagtacccagtctgtgatgctgatcccgtcccgcgtgcacgcttgaggaaaatgaagatgatcataagttgtgcaactctgccgcaatataaatgctttatttagaagaaaaataacagatacaacccttgatcacgaagaagacaaatcaactgtcactcatgccatcatctgaaggcctaaagaagctgaaattccagaatttgacaacctgtatttggacatgaatggtataatccacgtctgctcacatcctaacgatgatgatcctcatttccgaatatctgaagctgaaatcttcaaaaatatttttcactacattgaggtattgttcaggataatcaaaccacaaagaaatttcttcatggcagttgatggagttgcaccaagagcaaagatgaaccaacaaagaggaagaagattcagaactgcaaaagaagctcaagaaaacatcagaagagctttgcaaaaaggggaaaaattgccaaaagaagagagatttgattcaaactgtatcaccccaggtactgattttatggcaaggctaaatgatcaactgcaatattttgtaaacatgaaagtatcctcagatcctttgtggcaaacttgcaacatctttttgtcgggacatgatgttcctggtgaaggagagcataagataatggattttatcagatatgaaaaagccaaagaggattatgatgcgaatacaaggcattgtttgtatggacttgatgctgatttgatcatgcttggactggtctcccatgagccacatttttctttgctgagggaggaagtcagatttggcaagcaatccaaaagggtgacaaaaccagaggaaacagttttccatctattacatttgtcattgatgagagaatatcttgattttgaattcagtgctttgaaggttatgtaataagcttcagaatgatgtgaaataccgatgtaggttccagtgaaaatttcggagctacggcgagttgaaagttttgagagttccatattattattgcgtgtgaatcagctgatttgaatcatggagcttcgttctgaatgaacagcagtacggagagatgtttggtgattgaagcagcaataacgaaggttttattttatggccaaagaagaaggcctctttagtttagttaggccttgtctaggcccagaaaacatcgagccagaagacgatgtgcgtgatgtcaaatagatgcagctgctggctggagcatatcgttacagcggctggctggaagaatactgaagggactggcctcaaagtagacagttccgagctggagatattccgagaaagccgatgtataatttgaacaacatttgcaagacaactgagagattattttttactgccattacttattagttagcaatctgcaactgtatggtaacactgatgaggccaatggacgactgagactttatttttattgctattacttattagctagcagcaactgtaaggtaaaatgaggaaggaatcttgaaaaacgaacatcaatcacacagtcacaacagttgagtttttatcttgaaatttatcttacaaaaagtgatctgctgcttgagagtggtagcttgaaatgggcttaaagctactaaaatgcatgttctttcgaattagttgatatatctgttgaattgtgctgtttcgcatgagattttagggattttacgcgagaaatgagtagagaaacaacggaacactttgaggtcaaaggtcaggttcgttcaaatgttagtctatgtgccatacatctgaagcaggtttgatgaagagagaagagacctgagaggcaaaaacatgtttatttcattcaccaaagcagggcttatgacatttaacactataaattgcatgcaggaaggaacacgatggcctactccaacttctcgctgtagtttgagatcgtcttcttcgccaaatcgtgtcatttttggtgatcttgagaagctggaagctaaaatactaagaaaatcacctgcaacttgaaggaagatacctaaagtgaggtttggtggtaataaacaacaatttcaaacaattttgaacaaatttgcaatacttcattttgtgatttgataattttttcgcgccgaattttacatttcaaaataacaggtcgattttgacgatgcgttgcaaaacaatccaggtgggcagggagtgcgtgcgaaaacaatgcagggctcaaagggttaaggaagtgaataacaatttgcatacaca

Transcript

scaffold209.g4.t3

CCTTGACAAAGAAAGAGAACCAGCCATTTAATCTGTGACATCTTGTCGTTTTACTGCGTCTCGTAAATCGTCTGAATGAAGACCCGCTGAAGACTGTCTGAAGAAGCACGAAAATGCTCTCCTTCGTTATGTTTCTGATGCAAGGTTATTCCCCTACCTATCTGGCTTCAAGAGGAATGGAATGCGAATGACAATTGACTTCTTTGAAAAGAACTACCTGTCCTTTTATTGTTCTTACTCGTTCCAAAGTCTCTGTGGTCTATGATAATATTGACTCATTTTAGTTTAGATTGATCTATGGATTGATAAAAAAAGCCACTTACCATGCAAAATTGGAGACTCTAGGGAGGAGTAACTAGTACCCAGTCTGTGATGCTGATCCCGTCCCGCGTGCACGCTTGAGGAAAATGAAGATGATCATAAGTTGTGCAACTCTGCCGCAATATAAATGCTTTATTTAGAAGAAAAATAACAGATACAACCCTTGATCACGAAGAAGACAAATCAACTGTCACTCATGCCATCATCTGAAGGCCTAAAGAAGCTGAAATTCCAGAATTTGACAACCTGTATTTGGACATGAATGGTATAATCCACGTCTGCTCACATCCTAACGATGATGATCCTCATTTCCGAATATCTGAAGCTGAAATCTTCAAAAATATTTTTCACTACATTGAGGTATTGTTCAGGATAATCAAACCACAAAGAAATTTCTTCATGGCAGTTGATGGAGTTGCACCAAGAGCAAAGATGAACCAACAAAGAGGAAGAAGATTCAGAACTGCAAAAGAAGCTCAAGAAAACATCAGAAGAGCTTTGCAAAAAGGGGAAAAATTGCCAAAAGAAGAGAGATTTGATTCAAACTGTATCACCCCAGGTACTGATTTTATGGCAAGGCTAAATGATCAACTGCAATATTTTGTAAACATGAAAGTATCCTCAGATCCTTTGTGGCAAACTTGCAACATCTTTTTGTCGGGACATGATGTTCCTGGTGAAGGAGAGCATAAGATAATGGATTTTATCAGATATGAAAAAGCCAAAGAGGATTATGATGCGAATACAAGGCATTGTTTGTATGGACTTGATGCTGATTTGATCATGCTTGGACTGGTCTCCCATGAGCCACATTTTTCTTTGCTGAGGGAGGAAGTCAGATTTGGCAAGCAATCCAAAAGGGTGACAAAACCAGAGGAAACAGTTTTCCATCTATTACATTTGTCATTGATGAGAGAATATCTTGATTTTGAATTCAGTGCTTTGAAGgttatgtaataagcttcagaatgatgtgaaataccgatgtaggttccagtgaaaatttcggagctacggcgagttgaaagttttgagagttccatattattattgcgtgtgaatcagctgatttgaatcatggagcttcgTTCTGAATGAACAGCAGTACGGAGAGATGTTTGGTGATTGAAGCAGCAATAACGAAGGTTTTATTTTATGGCCAAAGAAGAAGGCCTCTTTAGTTTAGTTAGGCCTTGTCTAGGCCCAGAAAACATCGAGCCAGAAGACGATGTGCGTGATGTCAAATAGATGCAGCTGCTGGCTGGAGCATATCGTTACAGCGGCTGGCTGGAAGAATACTGAAGGGACTGGCCTCAAAGTAGACAGTTCCGAGCTGGAGATATTCCGAGAAAGCCGATGTATAATTTGAACAACATTTGCAAGACAACTGAGAGATTATTTTTTACTGCCATTACTTATTAGTTAGCAATCTGCAACTGTATGGTAACACTGATGAGGCCAATGGACGACTGAGACTTTATTTTTATTGCTATTACTTATTAGCTAGCAGCAACTGTAAGGTAAAATGAGGAAGGAATCTTGAAAAACGAACATCAATCACACAGTCACAACAGTTGAGTTTTTATCTTGAAATTTATCTTAcaaaaagtgatctgctgcttgagagtggtagcttgaaatgggcttaaagctactaaaatgcatgttctttcgaattagttgatatatctgttgaattgtgctgtttcgcatgagattttagggattttacgcgagaaatgagtagagaaacaacggaacactttgaggtcaaaggtcaggttcgttcaaatgttagtctatgtgccatacatctgaagcaggtttgatgaagagagaagagacctgagaggcaaaaacatgtttatttcattcaccaaagcagggcttatgacatttaacactataaattgcatgcaggaaggaacacgatggcctactccaacttctcgctgtagtttgagatcgtcttcttcgccaaatcgtgtcatttttggtgatcttgagaagctggaagctaaaatactaagaaaatcacctgcaacttgaaggaagatacctaaagtgaggtttggtggtaataaacaacaatttcaaacaattttgaacaaatttgcaatacttcattttgtgatttgataattttttcgcgccgaattttacatttcaaaataacaggtcgattttgacgatgcgttgcaaaacaatccaggtgggcagggagtgcgtgcgaaaacaatgcagggctcaaagggttaaggAAGTGAATAACAATTTGCATACACA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03159 all species →	XRN_N	XRN 5'-3' exonuclease N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027073 all species →	Family	5'-3' exoribonuclease	Interproscan
IPR004859 all species →	Domain	Xrn1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12341 all species →	5'->3' EXORIBONUCLEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0004527 all species →	Molecular Function	exonuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold209.g4.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.