Gene detail

Detailed information of scaffold21.g127.t1 in Morbakka virulenta

Genomic Location: scaffold21:5182808...5214792
NR annotation: PFX13576.1, Pogo transposable element with KRAB domain [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

scaffold21.g127.t1

atggcagagaaaagaaaaagttacgacttaaaattcaaagaacttgtggttaaatatgctcaagaaaatagtaacagagaagctggtagaaggttctctattgatgaaagcatggttcgacgttggagaaagaaatcattggatatcagcgatcaatcttcctcttcctctcaaagtaaaatgagaagattatctggtgctggacgaaagcccgttcttgggaaccttgaagaggaactattggagagaattatcgatgagcgtgagaagcatcaccatgtcccatgtaaattgataactgtttgggcacagcaacttgctactgaacacaacttgcacgattttcaagcgagtcgaggttggttgtttaatttcatgcgacgaaacggtctctccattagacgaagaacaactactggacaaaccatgccaaaggatggtttagcaaaaattgcgaactttgtaaaattttgtgaaaagcagagaaatgcatttggtttctctcctggaaatattgccaacatggacgagacaccaatatgggctgacatgccaagtgaaaccactgtcgataaatgtggtttaaagaccgttccaattaaatcaactggacatggaaaacagcgaataactgtatgtttagcagtcaaagcagatggctccaaaatgaaaccgttcgttgttataccaggaaaaaaactcaaaagtgaagttgctacaatcaaaggtgcaattgtaaaatgttcaagaaatggctggatgaacgatgaattgactgaagattggatctctcaagtgtggggaaatttagctttcaacaagaggtttcttgtatgggactcttttaagtgtcacataagtgaaaaaattaaacagtcgttgaaaaaaacgaatacagtaatgggtgtaattccaggaggatgcacgaagtttctccaacctttagatgtttgtattaacaagcccttcaaagtgattttccgagagttgtatgatgaatggtaccgaaaaggagacttcgagtacacgaaaggtggggttgtaaagccaccaaactatgttctacaagttcagtgggtcgtcgatgcttggaagaaaatcgatcctgaaattgtaaagaaatctttcgaaacatgtggaattacaaccagtgatgaaaaaaaaaatcactgcttgaaagaaggccagccaatcgaagaggcccgagttttgttaggaacatcggacgggaacctcgaatttgaaccaatttcaactctagacgatgacgtaaatttggaagtggagaatttaaaagatgtaactgatttaacagataagGATTGTATTTGGTGCTTGGCTTATGGAATAAGGTTTTATTCAAAATTTCACCGTAAAAGAATCAAAGAATTTGGAGAAATAGGATTACACAATTTTATTACTCTATTTTTGACACTGGTATGTGCTACAAAACAGGAAAACACGGCAAAGAAAATGTTTACTTTTTTGTCGTTTGTCAGTGAGGACACAACTCTAAAAAAAGAACTTGTTATGAAAGCGTATTTTTCCCTACTTCATGTACTCAAGGAGGATAACAATGACACTAAGTGGATTTCTGAAAAATTAAGTGATAAATTTGTGGATATGTGCAGAGCTTTTAAAGACCTTCCTGTAAAGACACAGAAGAGATACGATTACTCGAAACTCATCCGGTTGTATTTGAGTTCAGTTGAAAACTTGATCGACGGCGTTTTACCATTAGGACCAGATTGCTCTTTGCTTGACTGTGGTAACGGAATGACTATACTATTTCACCACAGTTCTAATATTGAATTTCAGAATCTTATTGATTTCATCCAGGCTTTACTGTGTTCGCAATACTTATGCGTAGACAAAGAGACTTTTAATAGAAAACTCCTGAATATAGTAACGGAACAATATTTTAAAGAGTTTGAGAAGTGTTTTCACCAACGGCTCAAGGTGTTTATACTTGTGAACTGTATAGCAGATTTGGCGGTATCTTTTACAATGTTGGCCCTAAATTGGTTTTTCATGGCTTTATGTGACTCACAAATCAAAGTCCTTTCTGAAGTCAACGGAGGCATCTTACCCAGTAGACTAATGCGATTTACAGAGTATAGTCGTTGTAGTGCCAACGACGTTGCTGAGCCATTCTGGAGACTTCACATGTATCGCAAGACCACTGCAACTGAAGCCACTTGCATTATAAATGCTATCGCCAAGAGACTACACTCCCCTACGCCCTTACACCCAAACCGTAACAATATGTTTGCAAACCTTGAAAAAATCGTATACAGAGAAAGAAAACTGGTATACAGAATGATACAAGAATTGGCTGATTACTCGAGCAAAAGGAAGGCACACTTGAAAACTCGCCTGAATATGTTGAATCTCTTTTTGAGGATAAGAGGAAAAGCATAA

Transcript

scaffold21.g127.t1

agtcgattatcgagttttgtagagcacgattattggagctgttgttatatgtgttcattattggaatacagttgtttatattgatggttaatttgttgttgatacgaatcttgtcgtaaagtttatacagtcctctaacgaaaagaatcgtcgtttttcggagttatcttcatttgaatcagagcacatattaaggagtcaagaaaaccacccctttctcacaaattttgatttcagttgtgaatatggcagagaaaagaaaaagttacgacttaaaattcaaagaacttgtggttaaatatgctcaagaaaatagtaacagagaagctggtagaaggttctctattgatgaaagcatggttcgacgttggagaaagaaatcattggatatcagcgatcaatcttcctcttcctctcaaagtaaaatgagaagattatctggtgctggacgaaagcccgttcttgggaaccttgaagaggaactattggagagaattatcgatgagcgtgagaagcatcaccatgtcccatgtaaattgataactgtttgggcacagcaacttgctactgaacacaacttgcacgattttcaagcgagtcgaggttggttgtttaatttcatgcgacgaaacggtctctccattagacgaagaacaactactggacaaaccatgccaaaggatggtttagcaaaaattgcgaactttgtaaaattttgtgaaaagcagagaaatgcatttggtttctctcctggaaatattgccaacatggacgagacaccaatatgggctgacatgccaagtgaaaccactgtcgataaatgtggtttaaagaccgttccaattaaatcaactggacatggaaaacagcgaataactgtatgtttagcagtcaaagcagatggctccaaaatgaaaccgttcgttgttataccaggaaaaaaactcaaaagtgaagttgctacaatcaaaggtgcaattgtaaaatgttcaagaaatggctggatgaacgatgaattgactgaagattggatctctcaagtgtggggaaatttagctttcaacaagaggtttcttgtatgggactcttttaagtgtcacataagtgaaaaaattaaacagtcgttgaaaaaaacgaatacagtaatgggtgtaattccaggaggatgcacgaagtttctccaacctttagatgtttgtattaacaagcccttcaaagtgattttccgagagttgtatgatgaatggtaccgaaaaggagacttcgagtacacgaaaggtggggttgtaaagccaccaaactatgttctacaagttcagtgggtcgtcgatgcttggaagaaaatcgatcctgaaattgtaaagaaatctttcgaaacatgtggaattacaaccagtgatgaaaaaaaaaatcactgcttgaaagaaggccagccaatcgaagaggcccgagttttgttaggaacatcggacgggaacctcgaatttgaaccaatttcaactctagacgatgacgtaaatttggaagtggagaatttaaaagatgtaactgatttaacagataagGATTGTATTTGGTGCTTGGCTTATGGAATAAGGTTTTATTCAAAATTTCACCGTAAAAGAATCAAAGAATTTGGAGAAATAGGATTACACAATTTTATTACTCTATTTTTGACACTGGTATGTGCTACAAAACAGGAAAACACGGCAAAGAAAATGTTTACTTTTTTGTCGTTTGTCAGTGAGGACACAACTCTAAAAAAAGAACTTGTTATGAAAGCGTATTTTTCCCTACTTCATGTACTCAAGGAGGATAACAATGACACTAAGTGGATTTCTGAAAAATTAAGTGATAAATTTGTGGATATGTGCAGAGCTTTTAAAGACCTTCCTGTAAAGACACAGAAGAGATACGATTACTCGAAACTCATCCGGTTGTATTTGAGTTCAGTTGAAAACTTGATCGACGGCGTTTTACCATTAGGACCAGATTGCTCTTTGCTTGACTGTGGTAACGGAATGACTATACTATTTCACCACAGTTCTAATATTGAATTTCAGAATCTTATTGATTTCATCCAGGCTTTACTGTGTTCGCAATACTTATGCGTAGACAAAGAGACTTTTAATAGAAAACTCCTGAATATAGTAACGGAACAATATTTTAAAGAGTTTGAGAAGTGTTTTCACCAACGGCTCAAGGTGTTTATACTTGTGAACTGTATAGCAGATTTGGCGGTATCTTTTACAATGTTGGCCCTAAATTGGTTTTTCATGGCTTTATGTGACTCACAAATCAAAGTCCTTTCTGAAGTCAACGGAGGCATCTTACCCAGTAGACTAATGCGATTTACAGAGTATAGTCGTTGTAGTGCCAACGACGTTGCTGAGCCATTCTGGAGACTTCACATGTATCGCAAGACCACTGCAACTGAAGCCACTTGCATTATAAATGCTATCGCCAAGAGACTACACTCCCCTACGCCCTTACACCCAAACCGTAACAATATGTTTGCAAACCTTGAAAAAATCGTATACAGAGAAAGAAAACTGGTATACAGAATGATACAAGAATTGGCTGATTACTCGAGCAAAAGGAAGGCACACTTGAAAACTCGCCTGAATATGTTGAATCTCTTTTTGAGGATAAGAGGAAAAGCATAAATTGAAAAAGAATATTTAAGGGTCACGTAACCTACTAGCGAAAATAAGAGCCGCAGTAAACAAGATAAAAGGAAATTAACAAAGGGGTACAAATGAAATTTTTTTTTTATAATTTTGCAATTATGTGGTGATTTTGGTATGGAGCATTTTACAGTCACAGGCTAGTCTACAGGAACATGATTTGCGAGGAGCAATAAAGTACATCGTGCGTA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03184	DDE_1	DDE superfamily endonuclease	Family	Interproscan
PF14910	MMS22L_N	S-phase genomic integrity recombination mediator, N-terminal	Family	Interproscan
PF03221	HTH_Tnp_Tc5	Tc5 transposase DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004875	Domain	DDE superfamily endonuclease domain	Interproscan
IPR029425	Domain	Protein MMS22-like, N-terminal	Interproscan
IPR010921	Homologous_superfamily	Trp repressor/replication initiator	Interproscan
IPR006600	Domain	HTH CenpB-type DNA-binding domain	Interproscan
IPR050863	Family	Centromere and Transposable Element-Derived Protein	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19303	TRANSPOSON	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan