Gene detail

Detailed information of scaffold21.g156.t1 in Morbakka virulenta

Genomic Location: scaffold21:6152436...6159360
NR annotation: XP_031565038.1, rRNA N6-adenosine-methyltransferase ZCCHC4-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold21.g156.t1

ATGAACTCCTGGCTTGAAATTTTTACCTGCCTCAGAACAAAGCCAGATCTGTGTGAAAATGAGGCTTTTCTGCAGCACGTTTGCAGAAGAACATGGCCAGGCGAAGCATCGTTGATACAGCTATGGATCATCAGAATTCGGTTTCTCAATCAGTCAATGTTCATGGGCTTGGGGTAGATGTTTTTGTGGCCCAAAACTCTGATGTCGAGGTACCGTACTGCGCACACGGCCCCACATTATTATTTGAAAGATTTGCTCAAGGCGGCAGCAGCAAACGCTTTTATGCCTGTTCAGCTTGCAGAGACAGGAAAGAATGTCCATTTTTCATGTTGGAAGGAGATAAAGTTACCCAAGGAAAGCAACTGATACAAGAACACACTAAAAAAGAGCTTAAGGAAAGGGCACAATCTCTGCCATATGATAAAGTGAAAAAAATGCCAGTTGACCAAGAATCTCGCTTTTGCACAGTGTGCGACTTGTTGTACTCAACAAACGAGACTTCTTTGCACAACCAGCATGATTATATTAGGTTGAAAAAGGAAGAAATGAAGTATCCAACTCGCATTCTTCCGGCACTTGTCAACAAAAGGTCAAATGCACAATACCTCTTTTCCAATAGTTCTTGTCAGTTCTTATCAAGACTTTTGATAAATGCGGGATACAGGAAGGTACTTTGTGTTGGAACTCCCAAATTACACGAAACCATTAAGCAGTTGGGGAAGGAGAATAAGAAGCTTAAAAGCTTTTTGCTTGATATCGATGACAGGTTTGCACAATTTAACCCCATGAAATTGTTTGCATGGTACAATATGTTTAACAATTACTTCTTTGATGCGAATAGCAAAGGCTGTTTGATGGATTTTCTCAAAGGAGTGAGGGAAGAACTTGTCATTGTTGTTGACCCCCCATTTGGAGGATTGATGTCAGTGTTAGCCCAGACTTTACAATCGCTTTGGAAAATTTGGCGCGATGTAAACCTATTTGACGAAGAGAGTACTCTATCTACAGTTTTGGCATTCCCTTATTTCCTTGAAAGCCATGTAAAAAATTCCTTACCATCACTGGTGATGATGGATTATAAGGTAATGTACACAAACCATAAAGCATACAAAGCAAAAGGCAAAGGAAACAGGAGAGGTTCGCCTATTCGGTTCTTTACAAACATCAAAGCATCTGACTTTGCACTACCTATGGAGGAAGGTTATCACTATTGTTCAGTATGTCATCGTTACATATCGGAAGAAAACAAACACTGCAATAAATGTAACAGTTGTACATCAAAGGATGGGACAACTTATGTTCACTGTGATCTTTGCAAGTGTTGTGTCAAACCAGGAAGGAAACATTGTAATATTTGCAACAAGTGTGAACACCCTAACCACAGTTGTAATGACACTACCTTATCATCTGGTTGCCATATTTGTGGCAAAGTGGGGCATAAAAGAAAAGACTGTAAGTTTCGAGTGAAAGATCAACAAAACAATTCCAAAAGAAAAGTCAAGGAAACAGATAGTACCCATGAAGTGAAAAAAATTAAAAGGACAAAGTAGTATTTCCCACCATTAATATCAAGAAAAGTTATTAATTGTTCTTTTTTCAAGTAAATTTGGCTTCCGTTGCTCTGATTAATTATTCTGTAGTGTTATCTTAAAGATGGAATTTTCTCTATATTTAATGGAGTGCTTAACTAACTGAAACAAAGATGAATGAaattaaggtcagggctcttactttggagatatggaacccaaagtgatcccccattggccagtacctttgaTGTCCAATGTTTCAAACATGGTTTTTTAAAACTTGAAATCCTTGccagtgaatattttacccaacaagtgatctgtaggtgataagggcattggagcttcactccaggttcggtacctccaagatacaaacactaacCTAATATACATTAGAAAAAACATACTGATAATTTTTGAAAGCCTTTTTTTGCCCTCCCAACAGGTTGAGCATTTTAAGAGGTGTTGAATTTATACCATAAGAAATACTCAACACCCAG

Protein

Uniprot

Uniprot term	Description
Q9H5U6	rRNA N(6)-adenosine-methyltransferase ZCCHC4 OS=Homo sapiens OX=9606 GN=ZCCHC4 PE=1 SV=3
D3ZV31	rRNA N(6)-adenosine-methyltransferase ZCCHC4 OS=Rattus norvegicus OX=10116 GN=Zcchc4 PE=3 SV=1
E1BGQ2	rRNA N(6)-adenosine-methyltransferase ZCCHC4 OS=Bos taurus OX=9913 GN=ZCCHC4 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10237	N6-adenineMlase	Probable N6-adenine methyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR017921	Domain	Zinc finger, CTCHY-type	Interproscan
IPR039846	Family	Zinc finger CCHC domain-containing protein 4	Interproscan
IPR041370	Family	Methyltransferase EEF1AKMT1/ZCCHC4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13493	ZINC FINGER CCHC DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008988	Molecular Function	rRNA (adenine-N6-)-methyltransferase activity	Interproscan
GO:0031167	Biological Process	rRNA methylation	Interproscan
GO:0008168	Molecular Function	methyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K25177	ZCCHC4; rRNA N6-adenosine-methyltransferase ZCCHC4	EC:2.1.1.-	Ribosome biogenesis	ko03009	deepkoala