Gene detail

Detailed information of scaffold21.g22.t1 in Morbakka virulenta

Genomic Location: scaffold21:931311...994857
NR annotation: CAH3035115.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold21.g22.t1

gattgatgttgttattcgccttttccaccaaggttcagtccctttcctctgtttctttcttctttgtaagcccagttctctggcaacaaacacactgacagctcttattaacttattagtatcagtaatattgaccgttattaagtctgttataatattatttaccctttttgtgatgtcattcaatttccttctgtctacttttttaaagctagtgaaacagtcaacatcctgttcattcatgattttaacaatatcatcaataattctcctttcattgtcatccctttcgggattatctttaatctctggtgcatccatattacgcatctcaccaacaacctcagcctcatcaaacatatctgattctaatagatcttcgtcgctgtcaataatgtttgtattattaattctcctcttaatttgttctaattctatttctgttagccattcatttttccgtattgccctggcttgatcacataatctttgttctgtacactcaaacaatcctcgctctttccataaattgaacatccttctcctatatcctctaattggtttaccatttgtatctaccggcttgcttgcaaaatagcattccattacggcaacattcatgcattttgaccacccagtcctggcagttgcttgatgacgaccgggcctgcgctgccataccgcaggacacctgccgggcgaggcaccttcaacataactgcctccagcaccattcacgccgttatttccatttcttcgatttgacataacactcataaacgaggaaagtgttgatgaggtgacacaaccaccggtgtttttatcgagacaccatctctaggaaggttacctgccatggctgaagaggccctcctccccatgagacagacttaaacccgccggacgccaacccggtatttcaaggtttcgggGCAGAAACGAAGGATTCAAAGAGTTGCGAGTGGAGGAAGTGGCGAAGTTGAATTTATATAGCTCTTTCGGCACAGGGCATGATAATTTGTTTTGACCCCCCGGAGAAAGATTAGTTACCTTTTACGCTGAGCCTGTTGCTTTAAGTTGCTTGTTGACAATGGTTAAAGTAAAGGCTGTATTTAGTTATGCTGCCGAGCAAGAAGATGAGTTAAATTTGGAAGTTGGGGACATTATAACAGACATTAAAAAACAAGATGGTGGTTGGTGGGAAGGAGAACTTAATGGAAAACGGGGAGTATTTCCTGAAAGTTTTGTTGAGGAAATTATTGTTGATGGCATTACCCAAGAAAAACCTGTATCTTCAGCAAACAAAAAAGTACGAAGAGTAAAAGTGGCATTTAGCTATGTGGCAGAAGAAAACGATGAGCTCTCATTAGAAGTAGGAGATTTTATTGATGTCACAAAGGAAATTGATCCAGGGTGGTGGGAAGGTTTTCTGCGAGGAAAAAAGGGTGTATTCCCTTCAAATTTTGTGGAAGTAGTAACTGAAGATGATGAGGAAGATGCTGGGAAACAGAAACATGAAGAGCACATGGATGAAGAATTGCCTACATTACCAATTGAAGATGATGAACCGCCGAAACCACCAGAGCCCGAAAAGCCGAAACCCGTCGGGATGGGATTTGGGATGGGTTTAGCACTAACACCAGATGACTTGAAAAGGCAATTGAAAAAAGTTTCGGCTGGTGATGCAAAGAAACCCCCAGCTGAACCAAAATTGCCCGAGCCATTACACCCTCTTAAATCTTCATCATTGACAGGATCTGGGAAAAGAAGTGCACCTGGACCACCAGGACCACCAGTACCACCAGGAAACCGAGAAAAAGACGAACCAAGTGTCGACAAGGAAGCGCCCAAAAAGCCCATGGTGCCGCCTGGTATGTCTGGACCAAAAGAACCCCCGCTGGCAACAGTCAGACCTCTTCAACCACAAACGACGCCACTTAAGGCACAACCAGCGGATATAAAAAACCCTCCTCCACCTGTTGGGGGAAAATCAAAGCCGCCACCACCACCCCATCCCAAACCAAAAGATAGTCAACAAAATGGCTTGAGTAGAGCAGGCTCCATTGGTATTAAAGGACCACCTCCGCCACCGTCATCCAGGAGTGGAAGTATTAACAAACGACCCGTTGCAACACCTGTAAAGCCCCCACCACCATCGGAAAAAAAGGTACAGCCTATTTCGAACACAGAACCGAAATCCAGTCCCGCTGTAAACGAATCACCTCCTGCTCAACATGTCGGCATTGATCTGGATTGTATTGCTGCTTCAGATGTCTTGACCAACCCTGTCAAATCGAGAGCAAAAGGCCCAGCCAAGAACCTTCCTGCCCGCTATTCACATATTAAGGACGACGAACCAGCTGTGGAGGATAAGCATGTTCCTCCCGAGCCCTCACTGAGCAAGTCGAAGCCCAAGCCAGCAGCACCAGTAATCGATGAAAAAGTTTCAAAAGATATAGGCATGCTGAAAAAGGATATGGAAAGTTTGAGAGAGCAAATGGCAGCTATGGAAAGTAAATTTCTGAAACATATTAAAGTTTTAACAGAGGATTTGGATGCGGAACGAAAACAGGTTGCTGGCCAGAAGATAGAAATCGACCGCCTGAAGAAACAAGTTGATATTTTAATGAAGTAGGTTGGGCGCAGAAAATTACTCTCGGGGAAATTTAAATATTAAAGAACTCTCCACAACACTGGGGTTTTTCAATACCTCCTTTCATTCTTGGTTGATGGGGATGGGATTTACTATATGCCCGTGGTACAATAGTTCAATAGCAAAATATCTATATAGGCAAAACGATGATTAAATCAACAGAAGATACCAGCTCTTTTTACCCTGGTGCTAGATGGCTTTTCCTCATTTTTTATGAATCCCAGAAAACCCCATTGCACAGGATGCAATAGAATTCCACTATAAAAATACTTTGGGGAAATCTCGCCGCTATTTTTTCATGAAGCGCAAGTATAACGACATTGTGCCACAATGTTTTTAAAAAGATAACTTCTCCACTCGAATTCTTAAGTGTGCAGACCTTGAAGCATTTTTTAAGAAGTAACGGACAGCGTGTCAAATGAGTGCGTTAGGGGCACTTGTAGCCACTTTCAGTGCCCATACATTTTGATACCCGTGTAAGAGTTATTGAAAACAAATAATGATGAGCTGGTACTCTTTGACTAATCGTTGTTCTGAAACTGTCCAAAATTTACATTATATGGTGTAATGTGACATTGTTTTGTTACTACGAAAAACGAACTATATTGCATCTCGGGTGATAAATTTTAAGTAAGTAATAGTAATAAAGACACGGTACTTTTAGTGCATTTGAAATTGTTAAGAGAAAATTACGAGTATAAACGATTAACGACTGGCTTAGAGTATTTCTATTGGAGTTCGTCTTTGTATATATAGAGCGAAATAGTATGCTACGGGTAGCATTGTCCCAGGATTGTAACTTTAAACAAAATATTTGCGTATAGATTACGGGATCATTTCATAACATGTTGACAAAGCAGGTCACAGTGTTTCGATACCTGGGTAGAGTTTGATGGTTGAGTATCAATTTGAAAAGGAGGGATTAGGTCTAATAATGTTGACTCTGCAATGTAGTAAATTGTAGGAAATTTACTTGTTTTAAGCTTATTTTTTATTGAGTTTAAAGGGGATAAATTTGGCATTGAATGTATTCAGTTGTACTAAGTTTGTTTCTTCAGTGATTACTGTTAAAAGTATGGGTGATAATTCTGGTGATAATTCTGAATCAACTCATAACTTACAAAATCTCTATTTTACCATGCTCAGTTGTCATTGCTTTTAATTATTACTCCCCATTTCAGATTTAGCCTAGTACTATTATTGGGGACCGTAAAAGATGATCTAGAATATCTTCTCATTTAGGTTTCTGTTTAGGCAGTAACTAGGATGCTCGATATCTTGATGCTAAATACTAATACGTCGGCCTCGTGAGCAAGATTCGGAACTTCCAAAACAGAATAAGTTCTTGTTGTTTTACAGCCGAGTGAGTATTTCACCATTAGTTAAAAAACACCAGCTGCAGTTAGAGTTTGCGTGAGAGCTAATTTGGATACAAAATGCTAGTTATGAATATCGGAAGCTACTGTGCAATGCAGAGCGATACTTGAGTCGAATAGTTCTTCGCGAAATTTAGCCATCATCGTGAGATGTTGGCATTTTTTTGACTTGTAAGCAAAGTAACATTTTATGCATTGCCCTTGACCAGGGTGTCTTTTCAGATCCAGCAACCGCATCGTTTATCGCTTCATTTATTCAACTTACATTTACATGAATAGTTTTTTATAGCGATTTTTGTTGCCAGAGTCGATGCGTAGCACAATTAGATGTTGTAATAAGACAATAGTCATGTCTATGGTATAAAAGTGGACTATTTGTAGTACTGATGATTTTGTACGTAGATCTTTGTATCATGGGCTTTTTTATTTTTAATAAAGATGCACTTTGATTATTCGACTGTCATTCACCTATTTTAGTATAAAATATGTGTAATTAT

Protein

Uniprot

Gene family

Uniprot term	Description
Q8R550	SH3 domain-containing kinase-binding protein 1 OS=Mus musculus OX=10090 GN=Sh3kbp1 PE=1 SV=1
Q925Q9	SH3 domain-containing kinase-binding protein 1 OS=Rattus norvegicus OX=10116 GN=Sh3kbp1 PE=1 SV=2
Q96B97	SH3 domain-containing kinase-binding protein 1 OS=Homo sapiens OX=9606 GN=SH3KBP1 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|SH3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14604	SH3_9	Variant SH3 domain	Domain	Interproscan
PF07653	SH3_2	Variant SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452	Domain	SH3 domain	Interproscan
IPR036028	Homologous_superfamily	SH3-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46026	RHO-TYPE GUANINE NUCLEOTIDE EXCHANGE FACTOR, ISOFORM F	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12470	SH3KBP1, CIN85; SH3 domain-containing kinase-binding protein 1	-	Membrane trafficking	ko04131	deepkoala