Gene detail

Detailed information of scaffold213.g14.t1 in Morbakka virulenta

Genomic Location: scaffold213:468934...478435
NR annotation: XP_002156095.1, E3 ubiquitin-protein ligase MARCHF11 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold213.g14.t1

CTAATAATTTTTTGAATCAACGGGGTTGGATTGGAATTTTCTGAACGTGTTTAGCCGCTGTTCTCCTCTTGGTTAACGGTTTCAGTAGGCAAGTAGAGTTTTTACAGATATAGATTAAGAATGGAAGGTAATGAGATAGAACAAGACACAGGCACACAAACAGATGAAAGTGCTTCCAACCAGCAAATATGTCGTATTTGCTACAGCGGTGCAGAAGATGAACCACTGTTAGCACTATGTAAGTGCTCTGGCTCAGTTAGATTTGTCCACCAGAGTTGCCTTCTTGCTTGGCTGAGGCATAGATCAAGAAGATGTGAATTGTGTAATTGCAAGTATAAACTGGTGAAAACAATTCGACCATGTGAACAGAGATTAACACCACGTATTACTGCCTGGCAGATGATGGCATTGATTAAAGCTATCTTGGTGCTAGATTGGTTTCACTTCTTGGAAACTGTGTTTTTGTGTTTTAGCTTATGCATTGTGAATCCTTTGAATTCATTGGATCTTTTATATCAAGTTGCTTTAATTTCAACAATTGAACTGTTTTATTATGGCATAAACCTGCTTAATTGTTATTTCATGTTGTATTACAATCAGTGGACACGATTAAACCTTGACATTGTTGTTCTTAATCACGTGGATACAAGAGAGGGACACAAACAAGTGCTTCTCTTCCGTATTATTGATAAATATGCAAGTTTTCTTAGTGGAAACAGAAGACTTATGGAGATTATTCAAAGTATTGAGGATGGATAAATTAAAAAGATGTTGCAGAGGTCACTGATGCTAATTGAGTTGAAATCTACAGTGTATCATTCATTTACGTTCGGAGAACGAATCCATTTATCACTTATAATAAAGATGGTAAATTTGTGAAGAAAACATGCTGGGGGAAACATTTGATGGAGGGATAGACTCCACAGAAAATGAAGGGCCTCTTGTTCACTCTGAGACTGTGCACCGGACGTGATGGAAACAACCTTTGATAACAGCCAACTTCACATAGTATAACGATATTGATATAAAAGAATGAAAGATTATATGTCTTCATTTTGAATTCGTAAATATATACAGAGAATTTTCCAAACGTTTCGCTTAACCTCGCCTTTCTTGGATTAATAGTCATCTGTGTAACATCTGTACAATCGGACTGATACGGATGGAAAACCTATAGAAAATAGGGGATATATTTTTAAACTATTCATAGTTTTTACCTTAACCTGAGCCAGCACATTTGAGGTTTCCAAAGTAGTACTTAGAAAAATTATTCGTAATCCTACTTTTTACAGTGGCCAAAAGTTTAGTACCGCTCCCCAGAATTCTGAATATATATATAACTGATTTACTGGACATGTAAATTTCAAATAACAAACATTTTCACACGCAGATCACAAGGTCCGAGACAATTTTTAGAAAGTAAAGATTCTGTTTTTTGACATCCTCCCACCAGACTTCGGCATTACTCATTTGATAAATCATATATCCAGACTTCTGTTATTGTTCTCCAGTTctatgaccaatgttctcagaggatacggtacttagagagacagagagagacaaagaCAGACACACACAGAGGtagatagatagatagatagatagatggatagatagatagatggatagatagatagatcgatcgatcgatcgatcgatcATTCCTGGTGGTAGAAAAATAATGGCAGGCATTTTGTTCACTGATATTCCACCTAACGGCTTGACACTTTGGGCTGCACCCATACTCTATGTGGTGAACTGTTGATCAAATCATTTTCAGGTGTATCTTTGAACGTAGTGCTTGTATGTAGTGAACTGCTGTAGTGTAAATTTGTCTGAAAAATCACCCGTTGCTGTCGTCATATCTGCATTGTAAATTGCTTTTTCGCTACACTGTAGTCGTTTACCAATTCATTGTTAAAATTATTCGCCCTTGTGACTTAAGAACCACAGTTTGAGCAAGTTGAATATCAGCAAGTGACGACTTTAATCAATCTCCATAGGTTTT

Protein

Uniprot

Uniprot term	Description
O60103	ERAD-associated E3 ubiquitin-protein ligase doa10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=doa10 PE=1 SV=1
Q0VD59	E3 ubiquitin-protein ligase MARCHF8 OS=Bos taurus OX=9913 GN=MARCHF8 PE=2 SV=1
Q8TCQ1	E3 ubiquitin-protein ligase MARCHF1 OS=Homo sapiens OX=9606 GN=MARCHF1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12906	RINGv	RING-variant domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR011016	Domain	Zinc finger, RING-CH-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46065	E3 UBIQUITIN-PROTEIN LIGASE MARCH 2/3 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan