Gene detail

Detailed information of scaffold217.g4.t1 in Morbakka virulenta

Genomic Location: scaffold217:89766...121522
NR annotation: XP_022052057.1, ribonuclease H1 isoform X2 [Acanthochromis polyacanthus]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold217.g4.t1

ATGTATTTTATTAAATTATCGCACTTTTATGTTGGTTTTGCAGCGGAGAAATCTTTCCTTCATCTGCGCCATTTGCAGGCGATAAAAATGCCTTTTTATGGAGTCCAAGTTGGCAGAAAAACTGGTGTTTATAAAACATGGAATGAATGCAAAGCACAAGTTCATGGATTCAAGAACCCTAAGTTTAGAAAATTTAATACCTATATAGAAGCAGTGGAATTTGTGCAGTTAAAAAGTGCATCTCAGCAGAAGCAAAATCACCAAAATGCAAGTCCTGTTGTGAAAAAATCAATCCTCAAGTCAGTTTCAAAACCTGGATGCCGAAAAACGTTGTTAACAGAGGCACACTCTTTAAAGACAAAGGAAACAGATTCATCTACTTCTTCCTTACAATCGGCAGGTATAGAAACTGATATGCCGGTTGTTTATACAGATGGATGTTGTTTTGCTAATGGTAAATCTACTGCCAGAGCTGGGATTGGTGTTTTTTGGGGAGAAGGGGATCCAAGAAATATTTCAGAAAAGCTTGAAGGTACACAGACCAACCAAAGAGCAGAAATCACTGCAGCCATACGAGCAGTTGAAGAGGCTACAAGAAGTAATATTCGTGCCATCGAATTGCGAACTGATAGCAGATACACGATAAATGCCATGACGTCTTGGATAAAAACCTGGAAGAAAAATGGATGGAAGTCAGCTGCAGGAGGGGCAGTTGCAAATCAAGCTGATTTTAAAAAACTGGAACAACTTTGTAAACAGGTTGAAGTCAAATGGGTGCACGTTAAAGGTCACTCTGGAGAAATAGGCAACGAAGAAGCAGATCGTTTGTCTAAAAAAGGTGCAATGATCAAAGAATGAAAGTCAGTATGGACGTCATAAAACAACTCATGTTACCAGCATAAGACAATTCTTGTAGGTTGGCTCAACCTCGCCTTTTTCTATAGCGTGAAAATCATCTCTCCTAGAACCCCACTTATTTTCATTAATATTACTCTAAAAGTATAAAAGTGTTTAGTGATAAGTTACATAGTAATTGTCAAACAGTTCATTACCCGTGACAAGCAGAAAAGAGAGCGTTCTGGAACCTTACAATATTTTGAAACATAACGGAAAAAAACTCATTTGTATCATACCAGGATCCCCCAAGCCTGTATTGCCTATGTTTTTGGCACGACAACTATTGTTACCAAAACTAATGTTGTGGAAACAAGAATTAATTGATTCAAAGATTCATAATGCAAATTAAGTCATTGTGATGTTTTTGAAATGTGCAAAAAATATTAGTTCTTTTATTAATAAAAACTCACTACTGCTCAACGTTTTGTTATTTAAATCACAAATGGACAATTGCGTGATGATCGAATGTTTTTAGCGTAGCGTTTTTCTCCGAAAATGCTTGTTTCCACCCTTAAAAATTATCCAGATTGGATTCGCTGCAGAGAATAGAAAGTATCGACTGTTCGACGTttcttcttcttctttttcttcttcAAGGTTCAATATCCAATGACGTAGACAATGGTGGCATTCCACTGCGCTGTGTCTTCAGCTATCTCAAACAGCATCAATTCATGGTACTTTATCTCTCTTTTTCTTATCCATTTGCTCAAACTGGAAATCCAGAGTATCCGACTTCCCCCTCTGTTCTTCCCCTCTGttcgtcttccacggaatcatcatcattcgtcttaagaaccacatttcacaactccacaaacgcatttttatttcgatgttattgtccaagcttcattaccatacatcagcataaacatagcagttcaatacccgtaatctagactgcatacttggagatgttatccagttttgaaaatgcTGTTTTGGCAATTGCGAACCTCCTTTTGATCGCTGTTCGGCGTTTATAAAAGCTCATTTACTCTGAAAAAAGGTTGATCAATTCATTTTTTGTAATGTGACATGGAATTGATCAGAAATTGGTTTACCTCACTAATTTCTCATTTACGCCCCCCCCCCCTACCCCAAATATCCTCATTCCAGGACCTGATCCAGAACGTTGTCAGTTTTTCTCTGGTGTAAGGGACCTTGAAGACAGTACCACAATGTCAAACACTATATGACCTGTGATGGACCACGCCCCATACTTAATGTTTTCTGTTAGTGTGTCATCAGAATAGCTGTGTGAGTACAGAATTATATTTCATTTTTTCCAAATAGAAACAATATCACCCCTTACTAAGAGTTGATTTACACAGAAAATACTGCCAGTCAGCTTTGATGATGCTTTGAAAGTGGTACCACACTGAATAGATCGATGAAAATATGTCATAAAAAGGGTACATTTAGTACATTTTGTACATTGTGTTGGCGCTACACTTTTTGTAGTTTAGGTAGCGGACCTTAATTATAGAGCAGGTAATTTTCGATAAATTACTAGTTGTTGTATTAGAATATCATTCCCGAATTTGATCCTCTTGGACACTCAGGTATTTCCCAAGAAATAGCCAGACCTGTTGGGATGTTGATGTAATGTTTTGAAATGGAatataatatgatacatatatatatatatatatatatatatatatTAAGTATTTGCCGTTACTGGAATTGAAGGAGACAATTGGCATAGAAACATTTCAATTCATATCAACAGTGTGTTTGTGTTATAGTTTATACTGGCTCAAAGATGTGATAAAAATTTTGTATCGATAGGTTTTTTCATTTTTTTTGTTATAAATTATGCTAATTATGAATTAAAGGAGTTTTCGAGCATTTTTATATGCCAGATCAACAGTAAATGCTTTACTGATTT

Protein

Uniprot

Uniprot term	Description
O60930	Ribonuclease H1 OS=Homo sapiens OX=9606 GN=RNASEH1 PE=1 SV=2
Q5BK46	Ribonuclease H1 OS=Rattus norvegicus OX=10116 GN=Rnaseh1 PE=2 SV=1
O70338	Ribonuclease H1 OS=Mus musculus OX=10090 GN=Rnaseh1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01693	Cauli_VI	Caulimovirus viroplasmin	Family	Interproscan
PF00075	RNase_H	RNase H	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR017067	Family	Ribonuclease H1, eukaryote	Interproscan
IPR002156	Domain	Ribonuclease H domain	Interproscan
IPR011320	Domain	Ribonuclease H1, N-terminal	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR050092	Family	Ribonuclease H	Interproscan
IPR037056	Homologous_superfamily	Ribonuclease H1, N-terminal domain superfamily	Interproscan
IPR009027	Homologous_superfamily	Large ribosomal subunit protein bL9/RNase H1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10642	RIBONUCLEASE H1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000287	Molecular Function	magnesium ion binding	Interproscan
GO:0004523	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0043137	Biological Process	DNA replication, removal of RNA primer	Interproscan
GO:0090502	Biological Process	obsolete RNA phosphodiester bond hydrolysis, endonucleolytic	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03469	rnhA, RNASEH1; ribonuclease HI	EC:3.1.26.4	DNA replication proteins	ko03032	deepkoala