Gene detail

Detailed information of scaffold219.g10.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold219:180942...210584
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold219.g10.t2

cgcagaacaaggctaactcctcaggcttgaagtctgtgacattctttggaaacatgactcgtattgtaatttgtgaataggcctaaaattaattcatggattcctctatctttgaaaaaacgaaagataaaggtttccggttgctacgtaatttctttagaattgcatcgttccattaatcatcggagcactgtggagcttcccttattattgtcgagcacatctgagaaaaggacgcaggaaagtgatccttcctcgagcatcgagcacgtaaacaaccagtcagcgaagaagttgcttaccactgaatttactcacacgtatcctttggtaaaagacgcaagaagttctcggctcagtctggaatgggacgtggtcattgatagtgaaagtctacggtcattgatagtgaaggtctgaagtaatcactgctacacactgtttgctacgttggaagattggaagacatgatggccaatctatttcgtggtgtttttctggttatttcattttgtgtcacaatcaactgctttataattaagccattatcaatatgttcatcacgaagaggactttcaagtcgacagcaagtcctttgtaacaaatacagaaatcatatggaattcattgttgatggaagcaaaatggcgttggatgaatgtcaaaatcaattcaaagatagaagatggaattgcacatttccactgaatcatatgagaggcttcacaccttttatgcctttaggccacagagaagcagcattcgtacatgcgataattgcagcaggaacttttcatgcaatcagcagagcttgcatggaatcaaaaataacatctcactgtcattgcagccaagaacgacggcctgatggcctcaaaaagtctttcttatgggctggctgtggcgacaatttaccatatggttataaatttagtaagacgttcgttgatgggaaggaagaattgagtgcgggggcaggcacgcaggatatttcgcagatctcaagagtactgatgaatttgcacaataacgaagctgggcgccgggctctgatggacaactcctttgtacagtgccgatgtcatggtttatcgaaaggttgttcaacgaagacatgttatcgacaactaaagcccttcaaagttgtcgggaaagcattgaaagaccaatactcaagtgcaatcgaaactgaaatttcacagaagagaacaacgaaaagtgaaggtgatatggaattgaaattacgcgagaagtacccacagtatcagaaagtgtctaaaaaggatttagtttatttgaaaagctccccagactattgcacgagagctgtgagactaggctctcatggcaccaaagggaggcaatgcaaccgaacctctcaaggactcgatggttgccagttgctatgctgtggccgtggttatcatgtaaaaagacaactgacgcgggactcttgtgcatgtcagtttatttggtgttgtcatctaaaatgtcagacctgtgaagtagaaaaaaatgtacactattgcaagtaacgtagatctcagagaggattctatagggatgtatttattgaaatattgcaagcgatgtgatttcacagcaaccgaaagagcagtgcgcaaatgacagtattatgcaagggtggacgccgaaagccaaggtgaaatcctgagaagatacaatgttttcccaatggggatgacttttaattgtatggggtagcttaaaagttgttgcacgggctaggatagggacacgtacccacatgggtgtaggagcaggggggggggggtgggacagactccctccacattttttctaggaatgttctacctacaaaataccttgttctgagcatttttaggtttcaaagaaccattgtcacccagggtcctttgcgggcacgctagaatttcagacttgtctgaaaaccaaaatttggccttcgtagaaactatagatccacaatgcagtacactcatttttatctataagaaaccgcttataagaaacggtaggctcaatttttcgaaagctaagaaacaaccctacctgaattgataaaagctaagaaacttctgcaattttcagttttaattttcctatcacactcaaaaatattttgaccttgtgcagttacagcaactgtttggacattattttgagtgtgaatcatgttatttactcgttttgagattttactaagtaatttgaaagccctttagacatgacaaaatcaactctaaacttccggcaataaaaatataagaaacacgtaagaaacttgtggtagcaaaatggcccaaaaatttaagaaactgcctaccagccccggactttagtttcttataaaaaaaatgagtgtatttgagtagatagcaccgttcaactaaactgacatttttctatcggttcaactactacagtgtggacccattgtttccccacaggccaaatgttattatcagatagcctgacatttcagcgtgcctgcaaaggaccatgggttagaatggttcttaaagaatgctacttcagtccaaagcatttcttgtctgcttcagatgcaagcacatgttgttgatagaaaggctaattccacagtttgcaaaatagcattttataacacagtgtcttttttaaaggtaaaggcctttttgtaaactcattttgcacacactcgctttggcctggtaatatagttaagttactccttgacaatgtacccaattgcaatatcaagcaatagtgaatgagtaaaccaagtagtaaatcaatcactaaatggtcaccactatttccttcaagatttacaaatttttaatcaaatcctacacacgatagtctggggttagtttagatgacgtatagtacgtaaaccagacaacaacatgcgattgtaaaggacttgcatgttaggtgtagtgtgaaaaatgtaccacgctatgaccttttgaattattttatatagactgtggaaatcctcacatattttgttaatatattccaccatcatatatcatatctgaatgttgcagcttacgtttttatgccagttttggtcagatttctgttgaaataggaagaataatttcgttgatgtatgtgttgttagtagtttcacttgtgtgttgttgttgtccaccacgcctcgggacccaaaaggtagcaatggggccctgtaatgatatgcattgaagacttctatttgaaatgatgcagacggcgcaaagtccgtttcaaattagatgtcaggcaaaataagtagcgagttttctg

Transcript

scaffold219.g10.t2

CGCAGAACAAGGCTAACTCCTCAGGCTTGAAGTCTGTGACATTCTTTGGAAACATGACTCGTATTGTAATTTGTGAATAGGCCTAAAATTAATTCATGGATTCCTCTATCTTTGAAAAAACGAAAGATAAAGGTTTCCGGTTGCTACGTAATTTCTTTAGAATTGCATCGTTCCATTAATCATCGGAGCACTGTGGAGCTTCCCTTATTATTGTCGAGCACATCTGAGAAAAGGACGCAGGAAAGTGATCCTTCCTCGAGCATCGAGCACGTAAACAACCAGTCAGCGAAGAAGTTGCTTACCACTGAATTTACTCACACGTATCCTTTGGTAAAAGACGCAAGAAGTTCTCGGCTCAGTCTGGAATGGGACGTGGTCATTGATAGTGAAAGTCTACGGTCATTGATAGTGAAGGTCTGAAGTAATCACTGCTACACACTGTTTGCTACGTTGGAAGATTGGAAGACATGATGGCCAATCTATTTCGTGGTGTTTTTCTGGTTATTTCATTTTGTGTCACAATCAACTGCTTTATAATTAAGCCATTATCAATATGTTCATCACGAAGAGGACTTTCAAGTCGACAGCAAGTCCTTTGTAACAAATACAGAAATCATATGGAATTCATTGTTGATGGAAGCAAAATGGCGTTGGATGAATGTCAAAATCAATTCAAAGATAGAAGATGGAATTGCACATTTCCACTGAATCATATGAGAGGCTTCACACCTTTTATGCCTTTAGGCCACAGAGAAGCAGCATTCGTACATGCGATAATTGCAGCAGGAACTTTTCATGCAATCAGCAGAGCTTGCATGGAATCAAAAATAACATCTCACTGTCATTGCAGCCAAGAACGACGGCCTGATGGCCTCAAAAAGTCTTTCTTATGGGCTGGCTGTGGCGACAATTTACCATATGGTTATAAATTTAGTAAGACGTTCGTTGATGGGAAGGAAGAATTGAGTGCGGGGGCAGGCACGCAGGATATTTCGCAGATCTCAAGAGTACTGATGAATTTGCACAATAACGAAGCTGGGCGCCGGGCTCTGATGGACAACTCCTTTGTACAGTGCCGATGTCATGGTTTATCGAAAGGTTGTTCAACGAAGACATGTTATCGACAACTAAAGCCCTTCAAAGTTGTCGGGAAAGCATTGAAAGACCAATACTCAAGTGCAATCGAAACTGAAATTTCACAGAAGAGAACAACGAAAAGTGAAGGTGATATGGAATTGAAATTACGCGAGAAGTACCCACAGTATCAGAAAGTGTCTAAAAAGGATTTAGTTTATTTGAAAAGCTCCCCAGACTATTGCACGAGAGCTGTGAGACTAGGCTCTCATGGCACCAAAGGGAGGCAATGCAACCGAACCTCTCAAGGACTCGATGGTTGCCAGTTGCTATGCTGTGGCCGTGGTTATCATGTAAAAAGACAACTGACGCGGGACTCTTGTGCATGTCAGTTTATTTGGTGTTGTCATCTAAAATGTCAGACCTGTGAAGTAGAAAAAAATGTACACTATTGCAAGTAACGTAGATCTCAGAGAGGATTCTATAGGGATGTATTTATTGAAATATTGCAAGCGATGTGATTTCACAGCAACCGAAAGAGCAGTGCGCAAATGACAGTATTATGCAAGGGTGGACGCCGAAAGCCAAGGTGAAATCCTGAGAAGATACAATGTTTTCCCAATGGGGATGACTTTTAATTGTATGGGGTAGCTTAAAAGTTGTTGCACGGGCTAGGATAGGGACACGTACCCACATGGGTGTAGGAGCAGGGGGGGGGGGGTGGGACAGACTCCCTCCACATTTTTTCTAGGAATGTTCTACCTACAAAATACCTTGTTCTGAGCATTTTTAGGTTTCAAAGAACCATTGTCACCCAGGGTCCTTTGCGGGCACGCTAGAATTTCAGACTTGTCTGAAAACCAAAATTTGGCCTTCGTAGAAACTATAGATCCACAATGCAGtacactcatttttatctataagaaaccgcttataagaaacggtaggctcaatttttcgaaagctaagaaacaaccctacctgaattgataaaagctaagaaacttctgcaattttcagttttaattttcctatcacactcaaaaatattttgaccttgtgcagttacagcaactgtttggacattattttgagtgtgaatcatgttatttactcgttttgagattttactaagtaatttgaaagccctttagacatgacaaaatcaactctaaacttccggcaataaaaatataagaaacacgtaagaaacttgtggtagcaaaatggcccaaaaatttaagaaactgcctaccagccccggactttagtttcttataaaaaaaatgagtgtaTTTGAGTAGATAGCACCGTTCAACTAAACTGACATTTTTCTATCGGTTCAACTACTACAGTGTGGACCCATTGTTTCCCCACAGGCCAAATGTTATTATCAGATAGCCTGACATTTCAGCGTGCCTGCAAAGGACCATGGGTTAGAATGGTTCTTAAAGAATGCTACTTCAGTCCAAAGCATTTCTTGTCTGCTTCAGATGCAAGCACATGTTGTTGATAGAAAGGCTAATTCCACAGTTTGCAAAATAGCATTTTATAACACAGTGTCTTTTTTAAAGGTAAAGGCCTTTTTGTAAACTCATTTTGCACACACTCGCTTTGGCCTGGTAATATAGTTAAGTTACTCCTTGACAATGTACCCAATTGCAATATCAAGCAATAGTGAATGAGTAAACCAAGTAGTAAATCAATCACTAAATGGTCACCACTATTTCCTTCAAGATTTACAAATTTTTAATCAAATCCTACACACGATAGTCTGGGGTTAGTTTAGATGACGTATAGTACGTAAACCAGACAACAACATGCGATTGTAAAGGACTTGCATGTTAGGTGTAGTGTGAAAAATGTACCACGCTATGACCTTTTGAATTATTTTATATAGACTGTGGAAATCCTCACATATTTTGTTAATATATTCCACCATCATATATCATATCTGAATGTTGCAGCTTACGTTTTTATGCCAGTTTTGGTCAGATTTCTGTTGAAATAGGAAGAATAATTTCgttgatgtatgtgttgttagtagtttcacttgtgtgttgttgttgtCCACCACGCCTCGGGACCCAAAAGGTAGCAATGGGGCCCTGTAATGATATGCATTGAAGACTTCTATTTGAAATGATGCAGACGGCGCAAAGTCCGTTTCAAATTAGATGTCAGGCAAAATAAGTAGCGAGTTTTCTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00110 all species →	wnt	wnt family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005817 all species →	Family	Wnt	Interproscan
IPR043158 all species →	Homologous_superfamily	Wnt, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12027 all species →	WNT RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005102 all species →	Molecular Function	signaling receptor binding	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0016055 all species →	Biological Process	Wnt signaling pathway	Interproscan
GO:0005109 all species →	Molecular Function	frizzled binding	Interproscan
GO:0005125 all species →	Molecular Function	cytokine activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0030182 all species →	Biological Process	neuron differentiation	Interproscan
GO:0045165 all species →	Biological Process	cell fate commitment	Interproscan
GO:0060070 all species →	Biological Process	canonical Wnt signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold219.g10.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.