Gene detail

Detailed information of scaffold22.g117.t3 in Aurelia aurita

Genomic Location: scaffold22:1423847...1440859
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI1 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold22.g117.t3

gtttcgtttggctgaatttaaactcgcgaaaacgaaggatttatgtcgtttgaaaagcaaaggaaaacagaaaaacaacaaagatacaaccaagaccatcctggaaaccaaagctgatctttgatcacttccagttcttgctcgacagtccatttctgttacagagatacctcccagttatacatcagcagccatttaaagagcgccaagaatggttttatgaaaatcttcacaaaggaaaagatctcagtcatccaacttttgatgaaaaatcgttgatcactgtcgctcgagaattgcatcgtttagcaaatagaattatagcaaaatacgcaatctcgtccccagagtgagttcgttgctctacctctactctgggatacaagtggccgttctgcaatttggttggctattcgaaaacaatagataacacaaactatttctcgataacatactaattattcgaataacaacaataacatctagtcactaagcaacaaccactacaatgttgctttgttgtttggaatcgaggtcacataatgaacgctacccttntgagttcgttgctctacctctactctgggatacaagtggccgttctgcaatttggttggctattcgaaaacaatagataacacaaactatttctcgataacatactaattattcgaataacaacaataacatctagtcactaagcaacaaccactacaatgttgctttgttgtttggaatcgaggtcacataatgaacgctaccctgccaaccgcaaatccataatggctgctaatccgcccttattttgggcggattgggactatgtgtaccaaggtgttcactcggcttcgtgactagcgtgcgtatgacaatcgctgttattaagcagctgtggaaaaatcttgaaccaagacagtgttgccttaaaaaggaacctggcagttcaatttgaaggagaagctggaatgggtgacggcgttgtcagagagtggctggatttattattcaaggaagtcctcaatcccgattatgcactcttcacactttctgcagatggtaggaaatttagattaagagcttcaaagtttgatcaattcattgaaacgaatgaagaagttttgcagttatttgtggcgaggaaaccaaagctgatctttgatcacttccagttcttgctcgacagtcccttactcttacagagatacctcccagttatacatcagcagccatttaaagagcgccaagaatggttttatgaaaatcttcacaaaggaaaagatctcagtcatccaacttttgatgaaaaatcgttgatcactgtcgctcgaggtagcacatttcaaccgaacagtaactctgccgtgaatcctgatcatttgaattattttcagtttgctggaagaatgatgggacttgcaatgtatcataaaagactaatttctgctagttttacaagatcattctacaaacatattttaggtatcccagtaaactaccaagacgtcgcatcaatggatcctgagtatgccaaaagtctgcagtggatactcgacaacgacatctcagatcttggcctagacttgacttttgcagttgaaagcaaggaatttggccaagttcaagctgttgcgttaaaggcaggaggtcatgatgtcatggttaccgagaacaataaggatgaatatgttcaattagctgcagatatgaaaatgacgaaagccatcaagccacagatttatagcttcttgaaaggatttcatgagtttattccacattcgttggttgcattgtttgatgagtacgagctggaacttgtactctcgggtattcctgaaatcgattgtaaagactggaaagagaatacaatttatcaggctggttatgatgccgattcacaacctgtcaagtggttttgggacgtagttgaagagctggaacttgaggatcgtgctgttttattacaatttgtaactgggagctctcgcgtaccttggggtggttttgcttgccttatgggatcctccggtcttcagaagttcaccatatcagcagtggccaataacaacaaagacatgttgccctcagcgagcacttgcttcaatcttttaaaactgccagaatacgcaagcaaagaagaacttcacagcaaattgatgacagctctgaaacatggtgctacgggttttgagttcgcttaaaagagtatttgacttgttaaactttttatgaggtaatataccaaataagcacggtttcaaacccctctgcaagtgactaggccacgtcaaagtcctccgaaagaactatagcgcaacattccctcagacaaatgcaaccccccccctccctggagatctatgatgagcgcgaccgtacgacgtctggaaatcttccaaaaatcgaccttgttcgggtaaaaaatttgcctaaagtctggtaaaatgttcataaacaatggccttgcatccgggcagtcccaccagatttgatcttcccgtacgcttatgttgatgaaaacccagcaaataataaatatccaaagacaatgcctcttgaagatgaatgaaaggggaaagttcgccctgccaattttaagcgcgatgcctggccactttcatgaggagtgtcatttctaaattgaattgtacaatcaggtattaataatttttgacttttctacaaaaatataagtaaaatatcttgcgatttgttattttctggaatatctgagccacagcttcttccgttattaagtcctaaactgttaattctcttgaatctatttccagtatttaaataaaccacgatttataaccaaaatcttcagtccaatgcatgatttttatttattaatttatacttacaatttaatgaaattttgtacacatt

Transcript

scaffold22.g117.t3

gtttcgtttggctgaatttaaactcgcgaaaacgaaggatttatgtcgtttgaaaagcaaaggaaaacagaaaaacaacaaagatacaaccaagaccatcctgGAAACCAAAGCTGATCTTTGATCACTTCCAGTTCTTGCTCGACAGTCCATTTCTGTTACAGAGATACCTCCCAGTTATACATCAGCAGCCATTTAAAGAGCGCCAAGAATGGTTTTATGAAAATCTTCACAAAGGAAAAGATCTCAGTCATCCAACTTTTGATGAAAAATCGTTGATCACTGTCGCTCGAGAATTGCATCGTTTAGCAAATAGAATTATAGCAAAATACGcaatctcgtccccagagtgagttcgttgctctacctctactctgggatacaagtggccgttctgcaatttggttggctattcgaaaacaatagataacacaaactatttctcgataacatactaattattcgaataacaacaataacatctagtcactaagcaacaaccactacaatgttgctttgttgtttggaatcgaggtcacataatgaacgctaccctTNtgagttcgttgctctacctctactctgggatacaagtggccgttctgcaatttggttggctattcgaaaacaatagataacacaaactatttctcgataacatactaattattcgaataacaacaataacatctagtcactaagcaacaaccactacaatgttgctttgttgtttggaatcgaggtcacataatgaacgctaccctgccaaccgcaaatccataatggctgctaatccgcccttattttgggcggattgggactatgtgtaccaaggtgttcactcggcttcgtgactagcgtgcgtatgacAATCGCTGTTATTAAGCAGCTGTGGAAAAATCTTGAACCAAGACAGTGTTGCCTTAAAAAGGAACCTGGCAGTTCAATTTGAAGGAGAAGCTGGAATGGGTGACGGCGTTGTCAGAGAGTGGCTGGATTTATTATTCAAGGAAGTCCTCAATCCCGATTATGCACTCTTCACACTTTCTGCAGATGGTAGGAAATTTAGATTAAGAGCTTCAAAGTTTGATCAATTCATTGAAACGAATGAAGAAGTTTTGCAGTTATTTGTGGCGAGGAAACCAAAGCTGATCTTTGATCACTTCCAGTTCTTGCTCGACAGTCCCTTACTCTTACAGAGATACCTCCCAGTTATACATCAGCAGCCATTTAAAGAGCGCCAAGAATGGTTTTATGAAAATCTTCACAAAGGAAAAGATCTCAGTCATCCAACTTTTGATGAAAAATCGTTGATCACTGTCGCTCGAGGTAGCACATTTCAACCGAACAGTAACTCTGCCGTGAATCCTGATCATTTGAATTATTTTCAGTTTGCTGGAAGAATGATGGGACTTGCAATGTATCATAAAAGACTAATTTCTGCTAGTTTTACAAGATCATTCTACAAACATATTTTAGGTATCCCAGTAAACTACCAAGACGTCGCATCAATGGATCCTGAGTATGCCAAAAGTCTGCAGTGGATACTCGACAACGACATCTCAGATCTTGGCCTAGACTTGACTTTTGCAGTTGAAAGCAAGGAATTTGGCCAAGTTCAAGCTGTTGCGTTAAAGGCAGGAGGTCATGATGTCATGGTTACCGAGAACAATAAGGATGAATATGTTCAATTAGCTGCAGATATGAAAATGACGAAAGCCATCAAGCCACAGATTTATAGCTTCTTGAAAGGATTTCATGAGTTTATTCCACATTCGTTGGTTGCATTGTTTGATGAGTACGAGCTGGAACTTGTACTCTCGGGTATTCCTGAAATCGATTGTAAAGACTGGAAAGAGAATACAATTTATCAGGCTGGTTATGATGCCGATTCACAACCTGTCAAGTGGTTTTGGGACGTAGTTGAAGAGCTGGAACTTGAGGATCGTGCTGTTTTATTACAATTTGTAACTGGGAGCTCTCGCGTACCTTGGGGTGGTTTTGCTTGCCTTATGGGATCCTCCGGTCTTCAGAAGTTCACCATATCAGCAGTGGCCAATAACAACAAAGACATGTTGCCCTCAGCGAGCACTTGCTTCAATCTTTTAAAACTGCCAGAATACGCAAGCAAAGAAGAACTTCACAGCAAATTGATGACAGCTCTGAAACATGGTGCTACGGGTTTTGAGTTCGCTTAAAAGAGTATTTGACTTGTTAAACTTTTTATGAGGTAATATACCAAATAAGCACGGTTTCAAACCCCTCTGCAAGTGACTAGGCCACGTCAAAGTCCTCCGAAAGAACTATAGCGCAACATTCCCTCAGACAAATGCAACCCCCCCCCTCCCTGGAGATCTATGATGAGCGCGACCGTAcgacgtctggaaatcttccaaaaatcgaccttgttcgggtaaaaaatttgcctaaagtctggtaaaatgttcataaacaatggccttgcatccgggcagtcccaccagatttgatcttcccgtacgcttatgTTGATGAAAACCCAGCAAATAATAAATATCCAAAGACAATGCCTCTTGAAGATGAATGAAAGGGGAAAGTTCGCCCTGCCAATTTTAAGCGCGATGCCTGGCCACTTTCATGAGGAGTGTCATTTCTAAATTGAATTGTACAATCAGGTATTAATAATTTTTGACTTTTCTACAAAAATATAAGTAAAATATCTTGCGATTTGTTATTTTCTGGAATATCTGAGCCACAGCTTCTTCCGTTATTAAGTCCTAAACTGTTAATTCTCTTGAATCTATTTCCAGTATTTAAATAAACCACGATTTATAACCAAAATCTTCAGTCCAATGCATGATTTTTATTTATTAATTTATACTTACAATTTAATGAAATTTTGTACACATT

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 activity\|HECT · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00632 all species →	HECT	HECT-domain (ubiquitin-transferase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000569 all species →	Domain	HECT domain	Interproscan
IPR050409 all species →	Family	E3 ubiquitin-protein ligase	Interproscan
IPR035983 all species →	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11254 all species →	HECT DOMAIN UBIQUITIN-PROTEIN LIGASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007030 all species →	Biological Process	Golgi organization	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061025 all species →	Biological Process	membrane fusion	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold22.g117.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.