Detailed information of scaffold22.g90.t1 in Morbakka virulenta

Genomic Location: scaffold22:4296655...4306313
NR annotation: KAJ8029491.1, U6 snRNA-associated Sm-like protein LSm6 [Holothuria leucospilota]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P62312U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens OX=9606 GN=LSM6 PE=1 SV=1
P62313U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus OX=10090 GN=Lsm6 PE=1 SV=1
O22823Sm-like protein LSM36B OS=Arabidopsis thaliana OX=3702 GN=LSM6B PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01423LSMLSM domain DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001163DomainSm domain, eukaryotic/archaea-typeInterproscan
IPR016487FamilySm-like protein Lsm6/SmFInterproscan
IPR010920Homologous_superfamilyLSM domain superfamilyInterproscan
IPR047575DomainSm domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-FInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0000932Cellular ComponentP-bodyInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005688Cellular ComponentU6 snRNPInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0005732Cellular Componentsno(s)RNA-containing ribonucleoprotein complexInterproscan
GO:0030490Biological Processmaturation of SSU-rRNAInterproscan
GO:0046540Cellular ComponentU4/U6 x U5 tri-snRNP complexInterproscan

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