Gene detail

Detailed information of scaffold225.g10.t1 in Morbakka virulenta

Genomic Location: scaffold225:403859...406705
NR annotation: XP_014834495.1, PREDICTED: uncharacterized protein LOC106912169 isoform X2 [Poecilia mexicana]

Gene Structure

More details in Jbrowse

Sequence

CDS

scaffold225.g10.t1

atggacttgaaagaagttgaaaattttcataacacatggattcttcatctcattgatgtagcaactcgctattctgctgcatgtcttgtgaaaactaagatgcaagaagaaattatgagaaaaatattcagtatctggatatcatattttggtgcaccaaggagtatgctctcagacaatggaggagcatttgctaatgagacatatcaagaaatgaatgagaagttaaatgttagtactctctctactgctgctgaatcaccatggagcaatggaacagttgaaaggcataatgcgactctctatgaatccatgatgaaaactatgaaagatacaaagtgtgaaccagaaattccccttgtttgggctgtcagtgcaaaaaatgccccacaaaacaatggaggatacagtccaaatcagcttgtatttggccgcagcatcaattttccaagtgttcttactgatgatatgcctgctttggagtcattcactaaaagtgacttggtcagaatgaatcttgatgctatgcacagagctagggaaaactttattaaagctgaatcaagtgagagaataagaagaactctacgatataagaatgaaaagacaacatcaaaatcacttcctaagaatgatggattgatggcagatgatttagattcagagaatggaaatgatcaaggaaataatgaaattaatgctgaacaagaagtctttagagaccatgatgaagtcaatgcagaacatgtaaacaacaatcatgaccatgtacgagatgactgtggactagacaaaccaaagagaaatacatatatcaagtttaaaatgaaagaaggtcaatggcaaaaagctaaggttcttagttatcaacccaaacagacaggaaaatacaaggactggatcaatgtacaagctgagaatgaacctgaaccaaaatgtattgattgggaagaagttgaatcttgggaagatattgaaaatgatgaaagtgtagtctacctaagttgttcccagaataagtctcaagaggttattgatgctaaacaaaaagaaatacagaatatgaaagaaaatgatgtttttgttgaagttgaatacaacaaccaaacacctattatcacagcccgatgggttattacagaaaaagtgaaaaatgatgaacaaatagtaaaagcaagactcgtagcacgtggctttgaagaagattctacacaattcaaaaaagattcacccagatgcactagagaaagcttgagacttctctttatggcagcttctttaatgaaatgggagctacatacattggacataactgcagcgtttctacaaggaaatgaaatagaaagagaactctacttgcaaccaccaaaagatatgacttttgcatattgtggacatgaagattttcatagaaacgttattgaagaaataaaaaacaagtttaaaatcagtaaagttgaaagtagaatgttcaagtatgtaggtcttgaagtaacacaaaccatggatgaaatagctgtgagccaaaactgttacatacagaatatagaccacataccatggtcagcacaaagacgggaactaaagggtgctgagttgctgcctgaagaaagaaaacaactgaagtgtttgggtggacaaatgctatgggtggcctcgcagacacgccctgacttgagttttgatgcttgtgtgatgacaaatgttttcaagacatccacaacaagatcaatacatgatgcaaataaagcagttgccaaattgaaggcacagtcaatgaaaatcagatttccatctattaaaagcattgaagatatcaagataaaagcctttccagacgccacacatgctagcctagatgatggatcatctcatggaggacatatagttctcatagagggcaggaataagaaagttgtgccaataagttggcaatcaaagaagctaaatagagttacaaaaagcccactggcttctgaaacactagaacttgctgaagcagcagatgcttgctatcctgtatcactgatggttcaagaaattttccaactcagagttcctcccatcacagagtgttttacagataataaatcacttgatgaaactctgaaaacaacaacttcactgtctgacaaaagattgcgagtggacatcgctcaactcaggcagatggtggagaagaaagaaattgttgttaaatggatagaaggaaatcgccagattgctgacagtctcacaaagagagcagcttccagccaaagactgctggaggttctggaaacttctcaactttaa

Transcript

scaffold225.g10.t1

gttcaaaaagccaccattgaaaccagtagttggcttgcgtctggcagatgatttcaatcaacttgtgtgcatggacttgaaagaagttgaaaattttcataacacatggattcttcatctcattgatgtagcaactcgctattctgctgcatgtcttgtgaaaactaagatgcaagaagaaattatgagaaaaatattcagtatctggatatcatattttggtgcaccaaggagtatgctctcagacaatggaggagcatttgctaatgagacatatcaagaaatgaatgagaagttaaatgttagtactctctctactgctgctgaatcaccatggagcaatggaacagttgaaaggcataatgcgactctctatgaatccatgatgaaaactatgaaagatacaaagtgtgaaccagaaattccccttgtttgggctgtcagtgcaaaaaatgccccacaaaacaatggaggatacagtccaaatcagcttgtatttggccgcagcatcaattttccaagtgttcttactgatgatatgcctgctttggagtcattcactaaaagtgacttggtcagaatgaatcttgatgctatgcacagagctagggaaaactttattaaagctgaatcaagtgagagaataagaagaactctacgatataagaatgaaaagacaacatcaaaatcacttcctaagaatgatggattgatggcagatgatttagattcagagaatggaaatgatcaaggaaataatgaaattaatgctgaacaagaagtctttagagaccatgatgaagtcaatgcagaacatgtaaacaacaatcatgaccatgtacgagatgactgtggactagacaaaccaaagagaaatacatatatcaagtttaaaatgaaagaaggtcaatggcaaaaagctaaggttcttagttatcaacccaaacagacaggaaaatacaaggactggatcaatgtacaagctgagaatgaacctgaaccaaaatgtattgattgggaagaagttgaatcttgggaagatattgaaaatgatgaaagtgtagtctacctaagttgttcccagaataagtctcaagaggttattgatgctaaacaaaaagaaatacagaatatgaaagaaaatgatgtttttgttgaagttgaatacaacaaccaaacacctattatcacagcccgatgggttattacagaaaaagtgaaaaatgatgaacaaatagtaaaagcaagactcgtagcacgtggctttgaagaagattctacacaattcaaaaaagattcacccagatgcactagagaaagcttgagacttctctttatggcagcttctttaatgaaatgggagctacatacattggacataactgcagcgtttctacaaggaaatgaaatagaaagagaactctacttgcaaccaccaaaagatatgacttttgcatattgtggacatgaagattttcatagaaacgttattgaagaaataaaaaacaagtttaaaatcagtaaagttgaaagtagaatgttcaagtatgtaggtcttgaagtaacacaaaccatggatgaaatagctgtgagccaaaactgttacatacagaatatagaccacataccatggtcagcacaaagacgggaactaaagggtgctgagttgctgcctgaagaaagaaaacaactgaagtgtttgggtggacaaatgctatgggtggcctcgcagacacgccctgacttgagttttgatgcttgtgtgatgacaaatgttttcaagacatccacaacaagatcaatacatgatgcaaataaagcagttgccaaattgaaggcacagtcaatgaaaatcagatttccatctattaaaagcattgaagatatcaagataaaagcctttccagacgccacacatgctagcctagatgatggatcatctcatggaggacatatagttctcatagagggcaggaataagaaagttgtgccaataagttggcaatcaaagaagctaaatagagttacaaaaagcccactggcttctgaaacactagaacttgctgaagcagcagatgcttgctatcctgtatcactgatggttcaagaaattttccaactcagagttcctcccatcacagagtgttttacagataataaatcacttgatgaaactctgaaaacaacaacttcactgtctgacaaaagattgcgagtggacatcgctcaactcaggcagatggtggagaagaaagaaattgttgttaaatggatagaaggaaatcgccagattgctgacagtctcacaaagagagcagcttccagccaaagactgctggaggttctggaaacttctcaactttaaacactagacgaagtgtctgtatatagatgtaaataaacttttgtgttttgatgaatgtgaaatagactgaatgcagactg

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07727	RVT_2	Reverse transcriptase (RNA-dependent DNA polymerase)	Family	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR013103	Domain	Reverse transcriptase, RNA-dependent DNA polymerase	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR052160	Family	Gypsy Retrotransposon Integrase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47266	ENDONUCLEASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan