Gene detail

Detailed information of scaffold23.g39.t1 in Morbakka virulenta

Genomic Location: scaffold23:1542816...1545581
NR annotation: KAG8193399.1, hypothetical protein JTE90_012199 [Oedothorax gibbosus]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold23.g39.t1

AAGATTTTGGCTTTTTCAATAATCAGTTTTTAGATTTCGAAAATTTAAAGCGTAAATTTAGTGAATTGTCATCATGCCAACGAAGCTATTTGTAGCGAATATACCACCAGGCTCCTCACAGACTGAGTTACAGCAACTTTTTGAAAAATACGGAAAGGTTACCGAGTGTGATATTATCAAAGATTACGCTTTTGTCCATTTTGAGTCCGAGGACGATGCTAAAGTCGCGATGAAAGAACTTAACGAAGCAGATTTTGCGGGTGCAAAAATTGAAATACAAATGTCCAGAAAGCAAGGAATTAATAGGAATAACAAGACAACAGCATACAGAAATCGTGAACGAGGAGATAGAAGAAACAACTTGCAAAGAGGCGGCGGTGCTCGAGGTGGACGAGATCGGCCACCAATGGGAGGCAGGGAAGCATATGATGGGTATTTTGACAGGCAACGTTTAGACAGAGCGAAGCCATATGAGCGCTACCCAAGGTACCCAGAATATGGATCTGCCTACTACGACCAACAACCAAATCCAAATGCTGGTTATTCATACGGAGGTAGCTATAGTCCTTACAATTACAATGGTTACAATGCAGGTTATACCGATTACTATCGAACAGGAGCACCGCCACAAAACACGGGGTATTACGATTCAGGATACGGTGCTCCGTCCGCTGCGTACGGAAATTATTATCAGACGATGAGAAACGGTTATGATCGATATTCAGCCCAGGGACAACCTCGAGGCACTTATACCAGTGACTCCTATCAAGACATGTACAGGTTTTAGACAAAAGGAACTTGAGATATTGACTACATAACTTGAGGTTACCACTGCAGAAAGGAGGAATGGTACACTTGGTTGTTAGAGCCAATACTGATTCTGAAAAGTTATATGCCAGCATTAAGTGAGTTAGCTTCATGATATTCCAGTTGTTAATTAGTGGATTGAGTATGTTAAATCCGATATAAACACATCTTTACACAGATTTAACAACTTCCCCTAAGGAGCGTGATTTTGTAATTAAGGTTATTAGCCAGCAAGTTATACCATCTTTCTGAGCAGTTTTATTCTTTTTGACACAAAAAGAACCATGTTCTTTGTGTATCCATGAACATATTTAAAATGCTGAATCAAAGCTAGTTAAGTACAGAGCATGTTACCTCTAGAATTCCAAGGGACAGTTATGGCCCCAGAGAAGATATTGAAGAAATTTGATCACAGTTTAAATTAGCATAGAGTTTTAGCCCAATGCTGCCCATGCTGTTGATGTGTACAACCAATGGATTGCTTTTCAGAGTTGCATAATGTAGCAACCAGTCACCATCAAATGACATGAGAAAAATTATGATCATAAATAAGCACACAGCACAAGCTTATATATATATCTAGTCAGTCAGTTATGTAATTAGCAGTGTAAGTAGATACCAATGCAGAGTTTTGGATGGATGGTTTTTCAGGTACTGCACGTAATAGTTAAAATTTCATGTTGCTAGCCCTTTGTCAGCAGGTTTTGAAAAGTTTCAAGATTTATGGAACTTGTATGCAAAAGAAAAAATTAAATACGGTATTCATAAAAACAGATTTGTATAATCAAGGCTCTTCAAGTGCAGGGTAAATAGAAGGatttttattttggtttgatttttatttgttaGACTTGCTGAAATGGTGTTCTGATAATATAAACCATAAGTACTGAAGAAAAAAAATGCCTGTGGGCACATAGATATTAAAAGAAAACTTGATAAGGATGGTTAATAAGTTCCTTTCAGTTAGTGTTTTGATGAAAAAAGTAGCTTTCTAATTTAGTGTCTGATAATTATTGAACTTTTTGAAGTAGATGTAAGTTTATGTAGGTTCTGAAGTACTACCAGGTTTTGAATTTAATATGGGTATACTTAATAAGCATATACTCCAGAAATTCCTATACCTTAAAATTTTCAATTCTGATGCCATGTGCTCTAAACAATCCTGATTTTCAGTCATCCTTTGTTTGCTGCCTATCTATTTACTACTTTGTTATTTGGAGTGTAACTCAACAATACAGGGAAATAACTTTGTTTGTTTTGTATATTCTCTTGGCATAAAATATGTACCTGAATGGTGAATGTTCTGACATGTAAGCAAGTATCTTGATATTTTTGCAGTCTGATGTAGATCTTTATGTATCACTCTCAGGGAATGCATGCTGCTTTGTATCCTTTGCAGAAGTGACACGGTGCTTACTGTAAAGCAAATGGAGATGTAATTTGTTAAGATTTATATATATTGTTTCCATGTGGTGGAGTTGGTGGATCATAAGTATACCCTTGTTTTTATAGTTGATTAACCCATCTTTAATTCTGAATATGAAATATCTTTCTATATCATCTTTCTTTAGATGGTGAATCAAGGTATTTAATCTTCAGTGCTGCAAAAATTTACAACTATTTAGATTTTATAGCAGAGGTCTTTGTGACTATCATGTTTTTTAGCGGCTTTGTCAAAGTAATATTGACCTTCCATACACTGCTGAACTGTTTCTTTTCATACCATTAGTTTCATCTATACTGTCTGTATTAAAGTGAGTTCTACAAAAGTAATTTTAACTGACCTATGGATGCAGTGTTTTCTGTTAGTGACAAACATTGATAATGTATGCACTGTGTCAGATCTTCCAAACAATATGCATTTTGTAGGGTCTTCTTGGGTCATATAACTTCAAATTCCTCTGGTAAGAAACAACATTTTACCTTTTACTGTTGTAAAAAATTGCTCTTGGGACC

Protein

Uniprot

Uniprot term	Description
Q5EA36	RNA-binding protein 14 OS=Bos taurus OX=9913 GN=RBM14 PE=2 SV=1
Q96PK6	RNA-binding protein 14 OS=Homo sapiens OX=9606 GN=RBM14 PE=1 SV=2
Q8C2Q3	RNA-binding protein 14 OS=Mus musculus OX=10090 GN=Rbm14 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR050441	Family	RNA-binding motif	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48034	TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005681	Cellular Component	spliceosomal complex	Interproscan
GO:0048026	Biological Process	positive regulation of mRNA splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13187	RBM4; RNA-binding protein 4	-	Spliceosome	ko03041	deepkoala